Amsterdam Neuroscience

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• Additional file 8 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

  Hop, P. J. (Contributor), Luijk, R. (Contributor), Daxinger, L. (Contributor), Iterson, M. V. (Contributor), Dekkers, K. F. (Contributor), Jansen, R. (Contributor), Meurs, J. B. J. V. (Contributor), Hoen, P. A. C. ’. (Contributor), Ikram, M. A. (Contributor), Greevenbroek, M. M. J. V. (Contributor), Boomsma, D. (Contributor), Slagboom, P. E. (Contributor), Veldink, J. H. (Contributor), Zwet, E. W. V. (Contributor) & Heijmans, B. T. (Contributor), Unknown Publisher, 1 Jan 2020

  DOI: 10.6084/m9.figshare.12891516.v1, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Genome-wide_identification_of_genes_regulating_DNA_methylation_using_genetic_anchors_for_causal_inference/12891516/1

  Dataset / Software: Dataset

• Additional file 11: of Blood lipids influence DNA methylation in circulating cells

  Dekkers, K. F. (Creator), van Iterson, M. (Contributor), Slieker, R. C. (Creator), Moed, M. H. (Creator), Bonder, M. J. (Creator), van Galen, M. (Contributor), Mei, H. (Contributor), Zhernakova, D. V. (Creator), van den Berg, L. H. (Contributor), Deelen, J. (Creator), van Dongen, J. (Contributor), van Heemst, D. (Contributor), Hofman, A. (Creator), Hottenga, J. J. (Creator), van der Kallen, C. J. H. (Contributor), Schalkwijk, C. G. (Creator), Stehouwer, C. D. A. (Creator), Tigchelaar, E. F. (Creator), Uitterlinden, A. G. (Contributor), Willemsen, G. (Creator), Zhernakova, A. (Creator), Franke, L. (Creator), 't Hoen, P. A. C. (Contributor), Jansen, R. (Creator), van Meurs, J. (Contributor), Boomsma, D. (Contributor), van Duijn, C. M. (Contributor), van Greevenbroek, M. M. J. (Contributor), Veldink, J. H. (Creator), Wijmenga, C. (Creator), van Zwet, E. W. (Contributor), Slagboom, P. E. (Contributor), Jukema, J. W. (Contributor) & Heijmans, B. T. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3596987_d2, https://figshare.com/articles/Additional_file_11_of_Blood_lipids_influence_DNA_methylation_in_circulating_cells/4320539

  Dataset / Software: Dataset

• Additional file 12: of Blood lipids influence DNA methylation in circulating cells

  Dekkers, K. F. (Creator), van Iterson, M. (Contributor), Slieker, R. C. (Creator), Moed, M. H. (Creator), Bonder, M. J. (Creator), van Galen, M. (Contributor), Mei, H. (Contributor), Zhernakova, D. V. (Creator), van den Berg, L. H. (Contributor), Deelen, J. (Creator), van Dongen, J. (Contributor), van Heemst, D. (Contributor), Hofman, A. (Creator), Hottenga, J. J. (Creator), van der Kallen, C. J. H. (Contributor), Schalkwijk, C. G. (Creator), Stehouwer, C. D. A. (Creator), Tigchelaar, E. F. (Creator), Uitterlinden, A. G. (Contributor), Willemsen, G. (Creator), Zhernakova, A. (Creator), Franke, L. (Creator), 't Hoen, P. A. C. (Contributor), Jansen, R. (Creator), van Meurs, J. (Contributor), Boomsma, D. (Contributor), van Duijn, C. M. (Contributor), van Greevenbroek, M. M. J. (Contributor), Veldink, J. H. (Creator), Wijmenga, C. (Creator), van Zwet, E. W. (Contributor), Slagboom, P. E. (Contributor), Jukema, J. W. (Contributor) & Heijmans, B. T. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3596987_d7, https://figshare.com/articles/Additional_file_12_of_Blood_lipids_influence_DNA_methylation_in_circulating_cells/4320629

  Dataset / Software: Dataset

• Additional file 7 of Distinct cell type-specific protein signatures in GRN and MAPT genetic subtypes of frontotemporal dementia

  Miedema, S. (Creator), Mol, M. O. (Creator), Koopmans, F. (Creator), Hondius, D. C. (Creator), van Nierop, P. (Creator), Menden, K. (Creator), de Veij Mestdagh, C. F. (Creator), van Rooij, J. (Creator), Ganz, A. B. (Creator), Paliukhovich, I. (Creator), Melhem, S. (Creator), Li, K. W. (Creator), Holstege, H. (Creator), Rizzu, P. (Creator), van Kesteren, R. (Creator), van Swieten, J. C. (Creator), Heutink, P. (Creator) & Smit, G. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.20267365.v1, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Distinct_cell_type-specific_protein_signatures_in_GRN_and_MAPT_genetic_subtypes_of_frontotemporal_dementia/20267365/1

  Dataset / Software: Dataset

• Additional file 15 of Distinct cell type-specific protein signatures in GRN and MAPT genetic subtypes of frontotemporal dementia

  Miedema, S. (Creator), Mol, M. O. (Creator), Koopmans, F. (Creator), Hondius, D. C. (Creator), van Nierop, P. (Creator), Menden, K. (Creator), de Veij Mestdagh, C. F. (Creator), van Rooij, J. (Creator), Ganz, A. B. (Creator), Paliukhovich, I. (Creator), Melhem, S. (Creator), Li, K. W. (Creator), Holstege, H. (Creator), Rizzu, P. (Creator), van Kesteren, R. (Creator), van Swieten, J. C. (Creator), Heutink, P. (Creator) & Smit, G. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.20267338.v1, https://springernature.figshare.com/articles/dataset/Additional_file_15_of_Distinct_cell_type-specific_protein_signatures_in_GRN_and_MAPT_genetic_subtypes_of_frontotemporal_dementia/20267338/1

  Dataset / Software: Dataset

• Additional file 1: of Neuropathology and cognitive performance in self-reported cognitively healthy centenarians

  Ganz, A. B. (Creator), Beker, N. (Creator), Hulsman, M. (Creator), Sikkes, S. (Creator), Netherlands Brain Bank, N. B. (Contributor), Scheltens, P. (Creator), Smit, G. (Creator), Rozemuller, A. J. M. (Creator), Hoozemans, J. J. M. (Creator) & Holstege, H. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.10047944, https://springernature.figshare.com/articles/Additional_file_1_of_Neuropathology_and_cognitive_performance_in_self-reported_cognitively_healthy_centenarians/10047944

  Dataset / Software: Dataset

• Additional file 2: of Neuropathology and cognitive performance in self-reported cognitively healthy centenarians

  Ganz, A. B. (Creator), Beker, N. (Creator), Hulsman, M. (Creator), Sikkes, S. (Creator), Netherlands Brain Bank, N. B. (Contributor), Scheltens, P. (Creator), Smit, G. (Creator), Rozemuller, A. J. M. (Creator), Hoozemans, J. J. M. (Creator) & Holstege, H. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.10047947, https://springernature.figshare.com/articles/Additional_file_2_of_Neuropathology_and_cognitive_performance_in_self-reported_cognitively_healthy_centenarians/10047947

  Dataset / Software: Dataset

• Additional file 6: of Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinsonâ s disease

  Donega, V. (Contributor), Burm, S. (Contributor), Strien, M. (Contributor), Bodegraven, E. (Contributor), Paliukhovich, I. (Contributor), Geut, H. (Contributor), Berg, W. (Contributor), Li, K. (Contributor), Smit, G. (Contributor), Basak, O. (Contributor) & Hol, E. (Contributor), Unknown Publisher, 3 Jun 2019

  DOI: 10.6084/m9.figshare.8222672.v1, https://springernature.figshare.com/articles/Additional_file_6_of_Transcriptome_and_proteome_profiling_of_neural_stem_cells_from_the_human_subventricular_zone_in_Parkinson_s_disease/8222672/1

  Dataset / Software: Dataset

• Additional file 1: of Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson’s disease

  Donega, V. (Contributor), Burm, S. (Contributor), Strien, M. (Contributor), Bodegraven, E. (Contributor), Paliukhovich, I. (Contributor), Geut, H. (Contributor), Berg, W. (Contributor), Li, K. (Contributor), Smit, G. (Contributor), Basak, O. (Contributor) & Hol, E. (Contributor), Unknown Publisher, 3 Jun 2019

  DOI: 10.6084/m9.figshare.8222639.v1, https://springernature.figshare.com/articles/Additional_file_1_of_Transcriptome_and_proteome_profiling_of_neural_stem_cells_from_the_human_subventricular_zone_in_Parkinson_s_disease/8222639/1

  Dataset / Software: Dataset

• Additional file 5: of Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinsonâ s disease

  Donega, V. (Creator), Burm, S. M. (Creator), van Strien, M. E. (Contributor), van Bodegraven, E. J. (Contributor), Paliukhovich, I. (Creator), Geut, H. (Creator), van de Berg, W. D. J. (Contributor), Li, K. W. (Creator), Smit, G. (Creator), Basak, O. (Creator) & Hol, E. M. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8222666, https://springernature.figshare.com/articles/Additional_file_5_of_Transcriptome_and_proteome_profiling_of_neural_stem_cells_from_the_human_subventricular_zone_in_Parkinson_s_disease/8222666

  Dataset / Software: Dataset

• MaMI dataset

  Suarez, L. E. (Contributor), van den Heuvel, M. P. (Contributor), Sporns, O. (Contributor), Lajoie, G. (Contributor) & Misic, B. (Contributor), Zenodo, 2022

  DOI: 10.5281/zenodo.6382386, https://zenodo.org/record/6382386

  Dataset / Software: Dataset

• A comparison of population receptive fields from fMRI and large-scale neurophysiological recordings in non-human primates.

  Klink, C. (Contributor), Chen, X. (Contributor), Vanduffel, W. (Contributor) & Roelfsema, P. (Contributor), Unknown Publisher, 1 Jan 2021

  DOI: 10.12751/g-node.p8ypgv, https://doi.gin.g-node.org/10.12751/g-node.p8ypgv

  Dataset / Software: Dataset

• MaMI dataset

  Suarez, L. E. (Contributor), van den Heuvel, M. P. (Contributor), Sporns, O. (Contributor), Lajoie, G. (Contributor) & Misic, B. (Contributor), Zenodo, 2022

  DOI: 10.5281/zenodo.7143143, https://zenodo.org/record/7143143

  Dataset / Software: Dataset

• Li_Supplemental_Scripts – Supplemental material for Parenting and Self-Control Across Early to Late Adolescence: A Three-Level Meta-Analysis

  Li, J. (Contributor), Willems, Y. E. (Contributor), Stok, F. M. (Contributor), Deković, M. (Contributor), Bartels, M. (Contributor) & Finkenauer, C. (Contributor), Unknown Publisher, 1 Nov 2019

  DOI: 10.25384/sage.9782981.v1, https://sage.figshare.com/articles/Li_Supplemental_Scripts_Supplemental_material_for_Parenting_and_Self-Control_Across_Early_to_Late_Adolescence_A_Three-Level_Meta-Analysis/9782981/1

  Dataset / Software: Dataset

• Sequential learning of regression models by penalized estimation

  van Wieringen, W. (Creator) & Binder, H. (Creator), Taylor&Francis, 2022

  DOI: 10.6084/m9.figshare.19100092.v1, https://tandf.figshare.com/articles/dataset/Sequential_learning_of_regression_models_by_penalized_estimation/19100092/1

  Dataset / Software: Dataset

• The Generalized Ridge Estimator of the Inverse Covariance Matrix

  van Wieringen, W. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.7981724, https://tandf.figshare.com/articles/The_generalized_ridge_estimator_of_the_inverse_covariance_matrix/7981724

  Dataset / Software: Dataset

• Supplementary Material for: Introducing Network Intervention Analysis to Investigate Sequential, Symptom-Specific Treatment Effects: A Demonstration in Co-Occurring Insomnia and Depression

  Blanken, T. F. (Contributor), VanDerZweerde, T. (Contributor), VanStraten, A. (Contributor), VanSomeren, E. J. W. (Contributor), Borsboom, D. (Contributor) & Lancee, J. (Contributor), Unknown Publisher, 1 Mar 2019

  DOI: 10.6084/m9.figshare.7564673.v1, https://karger.figshare.com/articles/Supplementary_Material_for_Introducing_Network_Intervention_Analysis_to_Investigate_Sequential_Symptom-Specific_Treatment_Effects_A_Demonstration_in_Co-Occurring_Insomnia_and_Depression/7564673/1

  Dataset / Software: Dataset

• Data for:Genes associated with interindividual differences in cognitive ability and HAR show overlapping expression patterns in cortical areas and excitatory neuron types

  Goriounova, N. (Creator) & Goriounova, N. (Contributor), DataverseNL, 2023

  DOI: 10.34894/yzfqao, https://dataverse.nl/citation?persistentId=doi:10.34894/YZFQAO

  Dataset / Software: Dataset

• Data from: Whole-cell properties of cerebellar nuclei neurons in vivo

  Canto, C. B. (Contributor), Witter, L. (Contributor) & De Zeeuw, C. I. (Contributor), Unknown Publisher, 1 Nov 2016

  DOI: 10.5061/dryad.31dj3, http://datadryad.org/stash/dataset/doi:10.5061/dryad.31dj3

  Dataset / Software: Dataset

• Replication Data for: Differential axonal trafficking of Neuropeptide Y-, LAMP1- and RAB7-tagged organelles in vivo

  Nassal, J. P. (Creator), Murphy, F. (Creator) & Toonen, R. (Creator), DataverseNL, 2022

  DOI: 10.34894/9qyxzs, https://dataverse.nl/citation?persistentId=doi:10.34894/9QYXZS

  Dataset / Software: Dataset

• Replication Data and Code for Rapid on-site histology of lung and pleural biopsies using higher harmonic generation microscopy and AI analysis

  van Huizen, L. (Creator), Blokker, M. (Creator), Groot, M. (Creator) & Groot, M. (Contributor), DataverseNL, 2024

  DOI: 10.34894/zzyu9m, https://dataverse.nl/citation?persistentId=doi:10.34894/ZZYU9M

  Dataset / Software: Dataset

• Additional file 5: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

  Slieker, R. C. (Creator), van Iterson, M. (Contributor), Luijk, R. (Contributor), Beekman, M. (Creator), Zhernakova, D. V. (Creator), Moed, M. H. (Creator), Mei, H. (Contributor), van Galen, M. (Contributor), Deelen, P. (Creator), Bonder, M. J. (Creator), Zhernakova, A. (Creator), Uitterlinden, A. G. (Contributor), Tigchelaar, E. F. (Creator), Stehouwer, C. D. A. (Creator), Schalkwijk, C. G. (Creator), van der Kallen, C. J. H. (Contributor), Hofman, A. (Creator), van Heemst, D. (Contributor), de Geus, E. (Contributor), van Dongen, J. (Contributor), Deelen, J. (Creator), van den Berg, L. H. (Contributor), van Meurs, J. (Contributor), Jansen, R. (Creator), 't Hoen, P. A. C. (Contributor), Franke, L. (Creator), Wijmenga, C. (Creator), Veldink, J. H. (Creator), Swertz, M. A. (Creator), van Greevenbroek, M. M. J. (Contributor), van Duijn, C. M. (Contributor), Boomsma, D. (Contributor), Slagboom, P. E. (Contributor) & Heijmans, B. T. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3602444_d5, https://figshare.com/articles/Additional_file_5_of_Age-related_accrual_of_methylomic_variability_is_linked_to_fundamental_ageing_mechanisms/4336721

  Dataset / Software: Dataset

• Data from: Large scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine

  Onderwater, G. L. J. (Contributor), Ligthart, L. (Contributor), Bot, M. (Contributor), Demirkan, A. (Contributor), Fu, J. (Contributor), Van Der Kallen, C. J. H. (Contributor), Vijfhuizen, L. S. (Contributor), Pool, R. (Contributor), Liu, J. (Contributor), Vanmolkot, F. H. M. (Contributor), Beekman, M. (Contributor), Wen, H. (Contributor), Amin, N. (Contributor), Thesing, C. S. (Contributor), Pijpers, J. A. (Contributor), Kies, D. A. (Contributor), Zielman, R. (Contributor), De Boer, I. (Contributor), Van Greevenbroek, M. M. J. (Contributor), Arts, I. C. W. (Contributor), Milaneschi, Y. (Contributor), Schram, M. T. (Contributor), Dagnelie, P. C. (Contributor), Franke, L. (Contributor), Ikram, M. A. (Contributor), Ferrari, M. D. (Contributor), Goeman, J. J. (Contributor), Slagboom, P. E. (Contributor), Wijmenga, C. (Contributor), Stehouwer, C. D. A. (Contributor), Boomsma, D. (Contributor), Van Duijn, C. M. (Contributor), Penninx, B. W. (Contributor), ’T Hoen, P. A. C. (Contributor), Terwindt, G. M. (Contributor) & Van Den Maagdenberg, A. M. J. M. (Contributor), Unknown Publisher, 1 Jan 2019

  DOI: 10.5061/dryad.p698mn7, http://datadryad.org/stash/dataset/doi:10.5061/dryad.p698mn7

  Dataset / Software: Dataset

• Additional file 4: Table S1. of Integrative DNA methylome analysis of pan-cancer biomarkers in cancer discordant monozygotic twin-pairs

  Roos, L. (Contributor), Dongen, J. V. (Contributor), Bell, C. (Contributor), Burri, A. (Contributor), Deloukas, P. (Contributor), Boomsma, D. (Contributor), Spector, T. (Contributor) & Bell, J. (Contributor), Unknown Publisher, 20 Jan 2016

  DOI: 10.6084/m9.figshare.c.3644438_d4.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_Table_S1_of_Integrative_DNA_methylome_analysis_of_pan-cancer_biomarkers_in_cancer_discordant_monozygotic_twin-pairs/4468901/1

  Dataset / Software: Dataset

• Additional file 5: of Blood lipids influence DNA methylation in circulating cells

  Dekkers, K. F. (Creator), van Iterson, M. (Contributor), Slieker, R. C. (Creator), Moed, M. H. (Creator), Bonder, M. J. (Creator), van Galen, M. (Contributor), Mei, H. (Contributor), Zhernakova, D. V. (Creator), van den Berg, L. H. (Contributor), Deelen, J. (Creator), van Dongen, J. (Contributor), van Heemst, D. (Contributor), Hofman, A. (Creator), Hottenga, J. J. (Creator), van der Kallen, C. J. H. (Contributor), Schalkwijk, C. G. (Creator), Stehouwer, C. D. A. (Creator), Tigchelaar, E. F. (Creator), Uitterlinden, A. G. (Contributor), Willemsen, G. (Creator), Zhernakova, A. (Creator), Franke, L. (Creator), 't Hoen, P. A. C. (Contributor), Jansen, R. (Creator), van Meurs, J. (Contributor), Boomsma, D. (Contributor), van Duijn, C. M. (Contributor), van Greevenbroek, M. M. J. (Contributor), Veldink, J. H. (Creator), Wijmenga, C. (Creator), van Zwet, E. W. (Contributor), Slagboom, P. E. (Contributor), Jukema, J. W. (Contributor) & Heijmans, B. T. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3596987_d14, https://figshare.com/articles/Additional_file_5_of_Blood_lipids_influence_DNA_methylation_in_circulating_cells/4320734

  Dataset / Software: Dataset