Amsterdam Neuroscience - Brain Imaging

Research Output 1997 2020

2020

Bayesian mixture regression analysis for regulation of Pluripotency in ES cells

Aflakparast, M., Geeven, G. & De Gunst, M. C. M., 2 Jan 2020, In : BMC Bioinformatics. 21, p. 1-13 13 p., 3.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Regression Analysis
Regression analysis
Genes
Gene
Transcription Factors

Photoacoustic spectroscopy for gas sensing: A comparison between piezoelectric and interferometric readout in custom quartz tuning forks

Dello Russo, S., Zhou, S., Zifarelli, A., Patimisco, P., Sampaolo, A., Giglio, M., Iannuzzi, D. & Spagnolo, V., 8 Jan 2020, In : Photoacoustics. 17, p. 1-7 7 p., 100155.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
forks
photoacoustic spectroscopy
Quartz
readout
Spectrum Analysis

Sensitivity analysis of Raman endoscopy with and without wavefront shaping

Amitonova, L. V. & de Boer, J. F., 3 Feb 2020, In : Optics Express. 28, 3, p. 3779-3788 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
sensitivity analysis
fibers
probes
endoscopes
sensitivity

The search for a unique Raman signature of amyloid-beta plaques in human brain tissue from Alzheimer's disease patients

Lochocki, B., Morrema, T. H. J., Ariese, F., Hoozemans, J. J. M. & de Boer, J. F., 2020, In : Analyst.

Research output: Contribution to JournalArticleAcademicpeer-review

Amyloid Plaques
Amyloid
brain
Brain
Alzheimer Disease

Wavelength-resolved Extreme Ultraviolet Lensless Imaging and Metrology

Jansen, G. S. M., 2020, 184 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2019

A fiber-tip photoacoustic sensor for in situ trace gas detection

Zhou, S. & Iannuzzi, D., Feb 2019, In : Review of Scientific Instruments. 90, 2, p. 1-8 8 p., 023102.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photoacoustic effect
Photoacoustic spectroscopy
Fermentation
fermentation
photoacoustic spectroscopy

Analysis of Neuroretinal Rim by Age, Race, and Sex Using High-Density 3-Dimensional Spectral-Domain Optical Coherence Tomography

Antar, H., Tsikata, E., Ratanawongphaibul, K., Zhang, J., Shieh, E., Lee, R., Freeman, M., Papadogeorgou, G., Simavli, H., Que, C., Verticchio Vercellin, A. C., Khoueir, Z., De Boer, J. F. & Chen, T. C., 1 Nov 2019, In : Journal of Glaucoma. 28, 11, p. 979-988 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Bruch Membrane
Population
Retinal Pigment Epithelium
Optic Disk

An automated home-cage-based 5-choice serial reaction time task for rapid assessment of attention and impulsivity in rats

Bruinsma, B., Terra, H., de Kloet, S. F., Luchicchi, A., Timmerman, A. J., Remmelink, E., Loos, M., Pattij, T. & Mansvelder, H. D., 1 Jul 2019, In : Psychopharmacology. 236, 7, p. 2015-2026 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Impulsive Behavior
Reaction Time
Scopolamine Hydrobromide
Rodentia
Pharmacology

A spectrally resolved single-shot wavefront sensor for broadband high-harmonic generation sources

Liu, X., Jansen, M., De Beurs, A., Eikema, K. & Witte, S., 17 Oct 2019, 2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019. Institute of Electrical and Electronics Engineers Inc., 8872611. (2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Wavefronts
Harmonic generation
shot
harmonic generations
broadband

Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition

Writing Committee for the ENIGMA-CNV Working Group , 30 Oct 2019, In : JAMA Psychiatry. p. 1-11 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Cognition
Aptitude
Brain
Iceland
Parietal Lobe

Bringing third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tissue

Van Huizen, L. M. G., Seinstra, D., Dickhoff, C., Radonic, T., Bahce, I., Van Mourik, F., Annema, J. T., Daniels, J. M. A., Van Boven, W. J. P. & Groot, M. L., 22 Jul 2019, Medical Laser Applications and Laser-Tissue Interactions IX. Lilge, L. D. & Philipp, C. M. (eds.). SPIE, 110790J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11079).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Harmonic generation
lungs
Microscopy
harmonic generations
Microscopic examination

Broadband extreme ultraviolet dispersion measurements using a high-harmonic source

Jansen, G. S. M., Liu, X., Eikema, K. S. E. & Witte, S., 1 Aug 2019, In : Optics Letters. 44, 15, p. 3625-3628 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
broadband
harmonics
pulses
thin films
nitrides

Characterization of thin metal films by ultrafast laser induced ultrasound

Zhang, H., Antoncecchi, A., Edward, S., Planken, P. & Witte, S., 17 Oct 2019, 2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019. Institute of Electrical and Electronics Engineers Inc., 8871454. (2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ultrafast lasers
metal films
Ultrasonics
Acoustics
Metals

Classification and treatment follow-up of a juxtapapillary retinal hemangioblastoma with optical coherence tomography angiography

Smid, L. M., van Overdam, K. A., Davidoiu, V., de Jong, J. H., de Boer, J. F., Vermeer, K. A. & van Velthoven, M. E. J., 1 Sep 2019, In : American Journal of Ophthalmology Case Reports. 15, 100472.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Hemangioblastoma
Optical Coherence Tomography
Angiography
Growth
Therapeutics

Compressive endo-microscopy

Amitonova, L. V. & De Boer, J. F., 22 Jul 2019, Advances in Microscopic Imaging II. Beaurepaire, E. & Pavone, F. S. (eds.). SPIE, 3 p. 110760J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11076).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Multimode fibers
Endoscopy
Microscopy
Microscopic examination
microscopy
Open Access
Data Integration
Bayesian inference
Regression Model
Variable Selection
Regression

Diagnostic capability of 3d peripapillary retinal volume for glaucoma using optical coherence tomography customized software

Liu, Y., Jassim, F., Braaf, B., Khoueir, Z., Poon, L. Y. C., Ben-David, G. S., Papadogeorgou, G., Tsikata, E., Simavli, H., Que, C., Lee, R., Shieh, E., Vakoc, B. J., Bouma, B. E., De Boer, J. F. & Chen, T. C., Aug 2019, In : Journal of Glaucoma. 28, 8, p. 708-717 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Nerve Fibers
Glaucoma
Software
Artifacts

EEG-based age-prediction models as stable and heritable indicators of brain maturational level in children and adolescents

Vandenbosch, M. M. L. J. Z., Ent, D. V. ., Boomsma, D. I., Anokhin, A. P. & Smit, D. J. A., 15 Apr 2019, In : Human Brain Mapping. 40, 6, p. 1919-1926 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Electroencephalography
Brain
Puberty
Netherlands
Longitudinal Studies

Efficient Generation of Extreme Ultraviolet Light from Nd:YAG-Driven Microdroplet-Tin Plasma

Schupp, R., Torretti, F., Meijer, R. A., Bayraktar, M., Scheers, J., Kurilovich, D., Bayerle, A., Eikema, K. S. E., Witte, S., Ubachs, W., Hoekstra, R. & Versolato, O. O., 8 Jul 2019, In : Physical Review Applied. 12, 1, p. 1-11 11 p., 014010.

Research output: Contribution to JournalArticleAcademicpeer-review

Endoscopic structural and molecular optical imaging: From lab to clinic

Feroldi, F., 2019, 148 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group

Jia, T., Chu, C., Liu, Y., van Dongen, J., Papastergios, E., Armstrong, N. J., Bastin, M. E., Carrillo-Roa, T., den Braber, A., Harris, M., Jansen, R., Liu, J., Luciano, M., Ori, A. P. S., Roiz Santiañez, R., Ruggeri, B., Sarkisyan, D., Shin, J., Sungeun, K., Tordesillas Gutiérrez, D. & 62 othersAmes, D., Artiges, E., Bakalkin, G., Banaschewski, T., Bokde, A. L. W., Brodaty, H., Bromberg, U., Brouwer, R., Büchel, C., Burke Quinlan, E., Cahn, W., de Zubicaray, G. I., Ehrlich, S., Ekström, T. J., Flor, H., Fröhner, J. H., Frouin, V., Garavan, H., Gowland, P., Heinz, A., Hoare, J., Ittermann, B., Jahanshad, N., Jiang, J., Kwok, J. B., Martin, N. G., Martinot, J-L., Mather, K. A., McMahon, K. L., McRae, A. F., Nees, F., Papadopoulos Orfanos, D., Paus, T., Poustka, L., Sämann, P. G., Schofield, P. R., Smolka, M. N., Stein, D. J., Strike, L. T., Teeuw, J., Thalamuthu, A., Trollor, J., Walter, H., Wardlaw, J. M., Wen, W., Whelan, R., Apostolova, L. G., Binder, E. B., Boomsma, D. I., Calhoun, V., Crespo-Facorro, B., Deary, I. J., Hulshoff Pol, H., Ophoff, R. A., Pausova, Z., Sachdev, P. S., Saykin, A., Wright, M. J., Thompson, P. M., Schumann, G., van t Ent, D. & Desrivières, S., 6 Dec 2019, In : Molecular Psychiatry.

Research output: Contribution to JournalArticleAcademicpeer-review

DNA Methylation
Epigenomics
Meta-Analysis
Nucleus Accumbens
Thalamus

Genetic architecture of subcortical brain structures in 38,851 individuals

Satizabal, C. L., Adams, H. H. H., Hibar, D. P., White, C. C., Knol, M. J., Stein, J. L., Scholz, M., Sargurupremraj, M., Jahanshad, N., Roshchupkin, G. V., Smith, A. V., Bis, J. C., Jian, X., Luciano, M., Hofer, E., Teumer, A., van der Lee, S. J., Yang, J., Yanek, L. R., Lee, T. V. & 269 othersLi, S., Hu, Y., Koh, J. Y., Eicher, J. D., Desrivières, S., Arias-Vasquez, A., Chauhan, G., Athanasiu, L., Rentería, M. E., Kim, S., Hoehn, D., Armstrong, N. J., Chen, Q., Holmes, A. J., den Braber, A., Kloszewska, I., Andersson, M., Espeseth, T., Grimm, O., Abramovic, L., Alhusaini, S., Milaneschi, Y., Papmeyer, M., Axelsson, T., Ehrlich, S., Roiz-Santiañez, R., Kraemer, B., Håberg, A. K., Jones, H. J., Pike, G. B., Stein, D. J., Stevens, A., Bralten, J., Vernooij, M. W., Harris, T. B., Filippi, I., Witte, A. V., Guadalupe, T., Wittfeld, K., Mosley, T. H., Becker, J. T., Doan, N. T., Hagenaars, S. P., Saba, Y., Cuellar-Partida, G., Amin, N., Hilal, S., Nho, K., Mirza-Schreiber, N., Arfanakis, K., Becker, D. M., Ames, D., Goldman, A. L., Lee, P. H., Boomsma, D. I., Lovestone, S., Giddaluru, S., Le Hellard, S., Mattheisen, M., Bohlken, M. M., Kasperaviciute, D., Schmaal, L., Lawrie, S. M., Agartz, I., Walton, E., Tordesillas-Gutierrez, D., Davies, G. E., Shin, J., Ipser, J. C., Vinke, L. N., Hoogman, M., Jia, T., Burkhardt, R., Klein, M., Crivello, F., Janowitz, D., Carmichael, O., Haukvik, U. K., Aribisala, B. S., Schmidt, H., Strike, L. T., Cheng, C-Y., Risacher, S. L., Pütz, B., Fleischman, D. A., Assareh, A. A., Mattay, V. S., Buckner, R. L., Mecocci, P., Dale, A. M., Cichon, S., Boks, M. P., Matarin, M., Penninx, B. W. J. H., Calhoun, V. D., Chakravarty, M. M., Marquand, A. F., Macare, C., Kharabian Masouleh, S., Oosterlaan, J., Amouyel, P., Hegenscheid, K., Rotter, J. I., Schork, A. J., Liewald, D. C. M., de Zubicaray, G. I., Wong, T. Y., Shen, L., Sämann, P. G., Brodaty, H., Roffman, J. L., de Geus, E. J. C., Tsolaki, M., Erk, S., van Eijk, K. R., Cavalleri, G. L., van der Wee, N. J. A., McIntosh, A. M., Gollub, R. L., Bulayeva, K. B., Bernard, M., Richards, J. S., Himali, J. J., Loeffler, M., Rommelse, N., Hoffmann, W., Westlye, L. T., Valdés Hernández, M. C., Hansell, N. K., van Erp, T. G. M., Wolf, C., Kwok, J. B. J., Vellas, B., Heinz, A., Olde Loohuis, L. M., Delanty, N., Ho, B-C., Ching, C. R. K., Shumskaya, E., Singh, B., Hofman, A., van der Meer, D., Homuth, G., Psaty, B. M., Bastin, M. E., Montgomery, G. W., Foroud, T. M., Reppermund, S., Hottenga, J-J., Simmons, A., Meyer-Lindenberg, A., Cahn, W., Whelan, C. D., van Donkelaar, M. M. J., Yang, Q., Hosten, N., Green, R. C., Thalamuthu, A., Mohnke, S., Hulshoff Pol, H. E., Lin, H., Jack, C. R., Schofield, P. R., Mühleisen, T. W., Maillard, P., Potkin, S. G., Wen, W., Fletcher, E., Toga, A. W., Gruber, O., Huentelman, M., Davey Smith, G., Launer, L. J., Nyberg, L., Jönsson, E. G., Crespo-Facorro, B., Koen, N., Greve, D. N., Uitterlinden, A. G., Weinberger, D. R., Steen, V. M., Fedko, I. O., Groenewold, N. A., Niessen, W. J., Toro, R., Tzourio, C., Longstreth, W. T., Ikram, M. K., Smoller, J. W., van Tol, M-J., Sussmann, J. E., Paus, T., Lemaître, H., Schroeter, M. L., Mazoyer, B., Andreassen, O. A., Holsboer, F., Depondt, C., Veltman, D. J., Turner, J. A., Pausova, Z., Schumann, G., van Rooij, D., Djurovic, S., Deary, I. J., McMahon, K. L., Müller-Myhsok, B., Brouwer, R. M., Soininen, H., Pandolfo, M., Wassink, T. H., Cheung, J. W., Wolfers, T., Martinot, J-L., Zwiers, M. P., Nauck, M., Melle, I., Martin, N. G., Kanai, R., Westman, E., Kahn, R. S., Sisodiya, S. M., White, T., Saremi, A., van Bokhoven, H., Brunner, H. G., Völzke, H., Wright, M. J., van 't Ent, D., Nöthen, M. M., Ophoff, R. A., Buitelaar, J. K., Fernández, G., Sachdev, P. S., Rietschel, M., van Haren, N. E. M., Fisher, S. E., Beiser, A. S., Francks, C., Saykin, A. J., Mather, K. A., Romanczuk-Seiferth, N., Hartman, C. A., DeStefano, A. L., Heslenfeld, D. J., Weiner, M. W., Walter, H., Hoekstra, P. J., Nyquist, P. A., Franke, B., Bennett, D. A., Grabe, H. J., Johnson, A. D., Chen, C., van Duijn, C. M., Lopez, O. L., Fornage, M., Wardlaw, J. M., Schmidt, R., DeCarli, C., De Jager, P. L., Villringer, A., Debette, S., Gudnason, V., Medland, S. E., Shulman, J. M., Thompson, P. M., Seshadri, S. & Ikram, M. A., Nov 2019, In : Nature Genetics. 51, 11, p. 1624-1636 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Axonal Transport
Globus Pallidus
Caudate Nucleus
Genome-Wide Association Study
Putamen

Identification of amyloid-beta (Aβ) plaques in freshly frozen human brain tissue using Raman spectroscopy

Lochocki, B., Morrema, T. H. J., Ariese, F., Hoozemans, J. J. M. & de Boer, J. F., 19 Jul 2019.

Research output: Contribution to ConferencePaperAcademic

Imaging of Aβ-deposits in ex-vivo Alzheimer's disease brain tissue using Raman spectroscopy (Conference Presentation)

Lochocki, B., Morrema, T. H. J., den Haan, J., Ariese, F., Bouwman, F. H., Hoozemans, J. J. & de Boer, J. F., 4 Mar 2019.

Research output: Contribution to ConferencePaperAcademic

Immersion photoacoustic spectrometer (iPAS) for arcing fault detection in power transformers

Zhou, S. & Iannuzzi, D., 1 Aug 2019, In : Optics Letters. 44, 15, p. 3741-3744 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
fault detection
transformers
submerging
spectrometers
oils

Insomnia disorder subtypes derived from life history and traits of affect and personality

Blanken, T. F., Benjamins, J. S., Borsboom, D., Vermunt, J. K., Paquola, C., Ramautar, J., Dekker, K., Stoffers, D., Wassing, R., Wei, Y. & Van Someren, E. J. W., Feb 2019, In : The Lancet Psychiatry. 6, 2, p. 151-163 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Sleep Initiation and Maintenance Disorders
Personality
Sleep
Netherlands
Depression

Introducing Network Intervention Analysis to Investigate Sequential, Symptom-Specific Treatment Effects: A Demonstration in Co-Occurring Insomnia and Depression

Blanken, T. F., Van Der Zweerde, T., Van Straten, A., Van Someren, E. J. W., Borsboom, D. & Lancee, J., 9 Jan 2019, In : Psychotherapy and Psychosomatics. p. 1-3 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Investigating the effects of mechanical stimulation on retinal ganglion cell spontaneous spiking activity

Marrese, M., Lonardoni, D., Boi, F., van Hoorn, H., Maccione, A., Zordan, S., Iannuzzi, D. & Berdondini, L., 27 Sep 2019, In : Frontiers in Neuroscience. 13, SEPTEMBER, p. 1-13 13 p., 1023.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Retinal Ganglion Cells
Retina
Physiological Phenomena
Electrodes
Equipment and Supplies

In vivo multifunctional optical coherence tomography at the periphery of the lungs

Feroldi, F., Willemse, J., Davidoiu, V., Gräfe, M. G. O., van Iperen, D. J., Goorsenberg, A. W. M., Annema, J. T., Daniels, J. M. A., Bonta, P. I. & de Boer, J. F., 1 Jun 2019, In : Biomedical Optics Express. 10, 6, p. 3070

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Optical Coherence Tomography
smooth muscle
lungs
tomography
asthma

In vivo subdiffuse scanning laser oximetry of the human retina

Damodaran, M., Amelink, A., Feroldi, F., Lochocki, B., Davidoiu, V. & de Boer, J. F., 1 Sep 2019, In : Journal of biomedical optics. 24, 9, p. 1-14 14 p., 096009.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
oximetry
retina
Scanning
scanning
Lasers

Ion energy and charge state distribution in Pico- and femtosecond laser-produced plasmas

De Faria Pinto, T., Bayerle, A., Matthijssen, J., Kurilovich, D., Stodolna, A., Versolato, O., Eikema, K. & Witte, S., 17 Oct 2019, 2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019. Institute of Electrical and Electronics Engineers Inc., 8872166. (2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Laser produced plasmas
Ultrashort pulses
laser plasmas
Ions
ion emission

OCT-Based Velocimetry for Blood Flow Quantification

Braaf, B., Gräfe, M. G. O., Uribe-Patarroyo, N., Bouma, B. E., Vakoc, B. J., de Boer, J. F., Donner, S. & Weichsel, J., Aug 2019, High Resolution Imaging in Microscopy and Ophthalmology. Springer International Publishing AG, p. 161-179 19 p. (High Resolution Imaging in Microscopy and Ophthalmology).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
Rheology
Blood Flow Velocity
Erythrocytes

Optical coherence tomography (OCT) to image active and inactive retinoblastomas as well as retinomas

Nadiarnykh, O., McNeill-Badalova, N. A., Gaillard, M-C., Bosscha, M. I., Fabius, A. W. M., Verbraak, F. D., Munier, F. L., de Boer, J. F. & Moll, A. C., 26 Aug 2019, In : Acta Ophthalmologica. 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Optical coherence tomography to detect acute esophageal radiation-induced damage in mice: A validation study

Jelvehgaran, P., de Bruin, D. M., Khmelinskii, A., Borst, G., Steinberg, J. D., Song, J-Y., de Vos, J., van Leeuwen, T. G., Alderliesten, T., de Boer, J. F. & van Herk, M., Sep 2019, In : Journal of biophotonics. 12, 9

Research output: Contribution to JournalLetterAcademicpeer-review

Open Access

Optical coherence tomography velocimetry based on decorrelation estimation of phasor pair ratios (DEPPAIR)

Gräfe, M. G. O., Nadiarnykh, O. & de Boer, J. F., 1 Nov 2019, In : Biomedical Optics Express. 10, 11, p. 5470-5485 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Rheology
Optical Coherence Tomography
Uncertainty
tomography
Doppler Effect

Optical parametric chirped pulse amplifier producing ultrashort 10.5 mJ pulses at 1.55 µm

de Faria Pinto, T., Mathijssen, J., Eikema, K. S. E. & Witte, S., 14 Oct 2019, In : Optics Express. 27, 21, p. 29829-29837 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
amplifiers
pulses
laser plasmas
systems engineering
yttrium-aluminum garnet

Optic axis uniformity as a metric to improve the contrast of birefringent structures and analyze the retinal nerve fiber layer in polarization-sensitive optical coherence tomography

Willemse, J., Gräfe, M. G. O., van de Kreeke, J. A., Feroldi, F., Verbraak, F. D. & de Boer, J. F., 1 Aug 2019, In : Optics Letters. 44, 15, p. 3893-3896

Research output: Contribution to JournalArticleAcademicpeer-review

nerve fibers
tomography
optics
birefringence
polarization

Parameter estimation for a discretely observed population process under Markov-modulation

de Gunst, M., Knapik, B., Mandjes, M. & Sollie, B., Dec 2019, In : Computational Statistics and Data Analysis. 140, p. 88-103 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Parameter estimation
Parameter Estimation
Modulation
Equidistant
Conditional Expectation

PAS-WRAP: A new approach to photoacoustic sensing, a new opportunity for the optical fiber sensor community

Zhou, S., Slaman, M., Gruca, G. & Iannuzzi, D., 28 Aug 2019, Seventh European Workshop on Optical Fibre Sensors. Kalli, K., Brambilla, G. & O'Keeffe, S. (eds.). SPIE, 4 p. 111992S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11199).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

PAS
Optical Fiber Sensor
Photoacoustic effect
Fiber optic sensors
Sensing

Phase-based OCT angiography in diagnostic imaging of pediatric retinoblastoma patients: abnormal blood vessels in post-treatment regression patterns

Nadiarnykh, O., Davidoiu, V., Grafe, M. G. O., Bosscha, M., Moll, A. C. & De Boer, J. F., 1 May 2019, In : Biomedical Optics Express. 10, 5, p. 2228-2241

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

Konold, P. E., Van Stokkum, I. H. M., Muzzopappa, F., Wilson, A., Groot, M. L., Kirilovsky, D. & Kennis, J. T. M., 9 Jan 2019, In : Journal of the American Chemical Society. 141, 1, p. 520-530 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Secondary Protein Structure
Carotenoids
Proteins
Structural dynamics
Hydrogen

Precision analysis and optimization in phase decorrelation OCT velocimetry

Gräfe, M. G. O., Gondre, M. & de Boer, J. F., 1 Mar 2019, In : Biomedical Optics Express. 10, 3, p. 1297-1314 18 p., 351615.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Rheology
optimization
flow velocity
axial flow
Optical Coherence Tomography

Prefrontal cortical ChAT-VIP interneurons provide local excitation by cholinergic synaptic transmission and control attention

Obermayer, J., Luchicchi, A., Heistek, T. S., de Kloet, S. F., Terra, H., Bruinsma, B., Mnie-Filali, O., Kortleven, C., Galakhova, A. A., Khalil, A. J., Kroon, T., Jonker, A. J., de Haan, R., van den Berg, W. D. J., Goriounova, N. A., de Kock, C. P. J., Pattij, T. & Mansvelder, H. D., 1 Dec 2019, In : Nature Communications. 10, 1, 5280.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
cholinergics
choline
Choline O-Acetyltransferase
Interneurons
neurons

Probability learning and feedback processing in dyslexia: A performance and heart rate analysis

Fraga González, G., Smit, D. J. A., van der Molen, M. J. W., Tijms, J., de Geus, E. J. C. & van der Molen, M. W., Dec 2019, In : Psychophysiology. 56, 12, p. 1-17 17 p., e13460.

Research output: Contribution to JournalArticleAcademicpeer-review

Probability Learning
Dyslexia
Heart Rate
Learning
Phonetics
degeneration
retina
birefringence
tomography
polarization

Quantitative Third Harmonic Generation Microscopy for Assessment of Glioma in Human Brain Tissue

Zhang, Z., de Munck, J. C., Verburg, N., Rozemuller, A. J., Vreuls, W., Cakmak, P., van Huizen, L. M. G., Idema, S., Aronica, E., de Witt Hamer, P. C., Wesseling, P. & Groot, M. L., 5 Jun 2019, In : Advanced Science. 6, 11, 1900163.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Harmonic generation
Glioma
brain
Microscopy
Brain

Radiation transport and scaling of optical depth in Nd:YAG laser-produced microdroplet-tin plasma

Schupp, R., Torretti, F., Meijer, R. A., Bayraktar, M., Sheil, J., Scheers, J., Kurilovich, D., Bayerle, A., Schafgans, A. A., Purvis, M., Eikema, K. S. E., Witte, S., Ubachs, W., Hoekstra, R. & Versolato, O. O., 19 Sep 2019, In : Applied Physics Letters. 115, 12, p. 1-5 5 p., 124101.

Research output: Contribution to JournalArticleAcademicpeer-review

radiation transport
optical thickness
YAG lasers
tin
scaling

Reconstructive imaging based on indirect measurements: From lensless imaging to waveguide analysis

Boonzajer Flaes, D. E., 2019, 133 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Scaling behaviour in music and cortical dynamics interplay to mediate music listening pleasure

Teixeira Borges, A. F., Irrmischer, M., Brockmeier, T., Smit, D. J. A., Mansvelder, H. D. & Linkenkaer-Hansen, K., 1 Dec 2019, In : Scientific Reports. 9, 1, 17700.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Pleasure
Music
Music Therapy
Insurance Benefits
Temporal Lobe

Stimulated Raman scattering microscopy with long wavelengths for improved imaging depth

Moester, M. J. B., Zada, L., Fokker, B., Ariese, F. & de Boer, J. F., Sep 2019, In : Journal of Raman Spectroscopy. 50, 9, p. 1321-1328 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Stimulated Raman scattering
Microscopic examination
Imaging techniques
Wavelength
Optical parametric oscillators