Amsterdam Neuroscience - Brain Imaging

Research Output 1997 2019

2019

A fiber-tip photoacoustic sensor for in situ trace gas detection

Zhou, S. & Iannuzzi, D., Feb 2019, In : Review of Scientific Instruments. 90, 2, p. 1-8 8 p., 023102.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photoacoustic effect
Photoacoustic spectroscopy
Fermentation
fermentation
photoacoustic spectroscopy

Classification and treatment follow-up of a juxtapapillary retinal hemangioblastoma with optical coherence tomography angiography

Smid, L. M., van Overdam, K. A., Davidoiu, V., de Jong, J. H., de Boer, J. F., Vermeer, K. A. & van Velthoven, M. E. J., 1 Sep 2019, In : American Journal of Ophthalmology Case Reports. 15, 100472.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Hemangioblastoma
Optical Coherence Tomography
Angiography
Growth
Therapeutics
Open Access
Data Integration
Bayesian inference
Regression Model
Variable Selection
Regression

Diagnostic capability of 3d peripapillary retinal volume for glaucoma using optical coherence tomography customized software

Liu, Y., Jassim, F., Braaf, B., Khoueir, Z., Poon, L. Y. C., Ben-David, G. S., Papadogeorgou, G., Tsikata, E., Simavli, H., Que, C., Lee, R., Shieh, E., Vakoc, B. J., Bouma, B. E., De Boer, J. F. & Chen, T. C., Aug 2019, In : Journal of Glaucoma. 28, 8, p. 708-717 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Nerve Fibers
Glaucoma
Software
Artifacts

EEG-based age-prediction models as stable and heritable indicators of brain maturational level in children and adolescents

Vandenbosch, M. M. L. J. Z., Ent, D. V. ., Boomsma, D. I., Anokhin, A. P. & Smit, D. J. A., 15 Apr 2019, In : Human Brain Mapping. 40, 6, p. 1919-1926 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Electroencephalography
Brain
Puberty
Netherlands
Longitudinal Studies

Identification of amyloid-beta (Aβ) plaques in freshly frozen human brain tissue using Raman spectroscopy

Lochocki, B., Morrema, T. H. J., Ariese, F., Hoozemans, J. J. M. & de Boer, J. F., 19 Jul 2019.

Research output: Contribution to ConferencePaperAcademic

Imaging of Aβ-deposits in ex-vivo Alzheimer's disease brain tissue using Raman spectroscopy (Conference Presentation)

Lochocki, B., Morrema, T. H. J., den Haan, J., Ariese, F., Bouwman, F. H., Hoozemans, J. J. & de Boer, J. F., 4 Mar 2019.

Research output: Contribution to ConferencePaperAcademic

Insomnia disorder subtypes derived from life history and traits of affect and personality

Blanken, T. F., Benjamins, J. S., Borsboom, D., Vermunt, J. K., Paquola, C., Ramautar, J., Dekker, K., Stoffers, D., Wassing, R., Wei, Y. & Van Someren, E. J. W., Feb 2019, In : The Lancet Psychiatry. 6, 2, p. 151-163 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Sleep Initiation and Maintenance Disorders
Personality
Sleep
Netherlands
Depression

Introducing Network Intervention Analysis to Investigate Sequential, Symptom-Specific Treatment Effects: A Demonstration in Co-Occurring Insomnia and Depression

Blanken, T. F., Van Der Zweerde, T., Van Straten, A., Van Someren, E. J. W., Borsboom, D. & Lancee, J., 9 Jan 2019, In : Psychotherapy and Psychosomatics. p. 1-3 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

In vivo multifunctional optical coherence tomography at the periphery of the lungs

Feroldi, F., Willemse, J., Davidoiu, V., Gräfe, M. G. O., van Iperen, D. J., Goorsenberg, A. W. M., Annema, J. T., Daniels, J. M. A., Bonta, P. I. & de Boer, J. F., 1 Jun 2019, In : Biomedical Optics Express. 10, 6, p. 3070

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Optical Coherence Tomography
smooth muscle
lungs
tomography
asthma

In vivo subdiffuse scanning laser oximetry of the human retina

Damodaran, M., Amelink, A., Feroldi, F., Lochocki, B., Davidoiu, V. & de Boer, J. F., 1 Sep 2019, In : Journal of biomedical optics. 24, 9, p. 1-14 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
oximetry
retina
Scanning
scanning
Lasers
nerve fibers
tomography
optics
birefringence
polarization

Parameter estimation for a discretely observed population process under Markov-modulation

de Gunst, M., Knapik, B., Mandjes, M. & Sollie, B., 26 Jun 2019, In : Computational Statistics and Data Analysis. 140, p. 88-103 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Parameter estimation
Parameter Estimation
Modulation
Equidistant
Conditional Expectation

Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

Konold, P. E., Van Stokkum, I. H. M., Muzzopappa, F., Wilson, A., Groot, M. L., Kirilovsky, D. & Kennis, J. T. M., 9 Jan 2019, In : Journal of the American Chemical Society. 141, 1, p. 520-530 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Secondary Protein Structure
Carotenoids
Proteins
Structural dynamics
Hydrogen

Precision analysis and optimization in phase decorrelation OCT velocimetry

Gräfe, M. G. O., Gondre, M. & de Boer, J. F., 1 Mar 2019, In : Biomedical Optics Express. 10, 3, p. 1297-1314 18 p., 351615.

Research output: Contribution to JournalArticleAcademicpeer-review

Rheology
optimization
flow velocity
axial flow
Optical Coherence Tomography

Quantitative Third Harmonic Generation Microscopy for Assessment of Glioma in Human Brain Tissue

Zhang, Z., de Munck, J. C., Verburg, N., Rozemuller, A. J., Vreuls, W., Cakmak, P., van Huizen, L. M. G., Idema, S., Aronica, E., de Witt Hamer, P. C., Wesseling, P. & Groot, M. L., 1 Jan 2019, In : Advanced Science. 1900163.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Harmonic generation
Glioma
brain
Microscopy
Brain

Radiation transport and scaling of optical depth in Nd:YAG laser-produced microdroplet-tin plasma

Schupp, R., Torretti, F., Meijer, R. A., Bayraktar, M., Sheil, J., Scheers, J., Kurilovich, D., Bayerle, A., Schafgans, A. A., Purvis, M., Eikema, K. S. E., Witte, S., Ubachs, W., Hoekstra, R. & Versolato, O. O., 19 Sep 2019, In : Applied Physics Letters. 115, 12, p. 1-5 5 p., 124101.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
radiation transport
optical thickness
YAG lasers
tin
scaling

Reconstructive imaging based on indirect measurements: From lensless imaging to waveguide analysis

Boonzajer Flaes, D. E., 2019, 133 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Subtyping insomnia disorder – Authors' reply

Blanken, T. F. & van Someren, E. J. W., Apr 2019, In : The Lancet Psychiatry. 6, 4, p. 285-286 2 p.

Research output: Contribution to JournalLetterAcademicpeer-review

Tensor regularized total variation for denoising of third harmonic generation images of brain tumors

Zhang, Z., Groot, M. L. & de Munck, J. C., 1 Jan 2019, In : Journal of biophotonics. 12, 1, p. 1-13 13 p., e201800129.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Harmonic generation
Brain Neoplasms
brain
Tensors
Tumors

Three-dimensional optical coherence tomography imaging for glaucoma associated with boston keratoprosthesis type i and II

Khoueir, Z., Jassim, F., Braaf, B., Poon, L. Y. C., Tsikata, E., Chodosh, J., Dohlman, C. H., Vakoc, B. J., Bouma, B. E., De Boer, J. F. & Chen, T. C., Aug 2019, In : Journal of Glaucoma. 28, 8, p. 718-726 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Glaucoma
Optic Disk
Nerve Fibers
Artifacts

Top-down and bottom-up control of stress-coping

de Kloet, E. R., de Kloet, S. F., de Kloet, C. S. & de Kloet, A. D., Mar 2019, In : Journal of Neuroendocrinology. 31, 3, p. 1-16 16 p., e12675.

Research output: Contribution to JournalReview articleAcademicpeer-review

Glucocorticoid Receptors
Mineralocorticoid Receptors
Resource Allocation
Anniversaries and Special Events
Prefrontal Cortex
2018

70 μm diameter optical probe for common-path optical coherence tomography in air and liquids

Marrese, M., Offerhaus, H., Paardekam, E. & Iannuzzi, D., 15 Dec 2018, In : Optics Letters. 43, 24, p. 5929-5932 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
optical paths
tomography
barium
probes
air

Accurate estimation of the attenuation coefficient from axial point spread function corrected OCT scans of a single layer phantom

Ghafaryasl, B., Vermeer, K. A., Kalkman, J., Callewaert, T., De Boer, J. F. & Van Vliet, L. J., 14 Feb 2018, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXII. SPIE, Vol. 10483. 104832B

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Optical tomography
Optical transfer function
Optical Coherence Tomography
attenuation coefficients
point spread functions

Adenosine A2A receptors control glutamatergic synaptic plasticity in fast spiking interneurons of the prefrontal cortex

Kerkhofs, A., Canas, P. M., Timmerman, A. J., Heistek, T. S., Real, J. I., Xavier, C., Cunha, R. A., Mansvelder, H. D. & Ferreira, S. G., 20 Mar 2018, In : Frontiers in Pharmacology. 9, 20 March, p. 1-12 12 p., 133.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Adenosine A2A Receptors
Neuronal Plasticity
Interneurons
Prefrontal Cortex
Synapses

A genetic perspective into impulsive and compulsive behaviours

Rodrigues Zilhão Nogueira, N., 2018, 171 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Amyloid-beta and phosphorylated tau in post-mortem Alzheimer's disease retinas

den Haan, J., Morrema, T. H. J., Verbraak, F. D., de Boer, J. F., Scheltens, P., Rozemuller, A. J., Bergen, A. A. B., Bouwman, F. H. & Hoozemans, J. J., 28 Dec 2018, In : Acta Neuropathologica Communications. 6, p. 1-11 11 p., 147.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Amyloid
Retina
Alzheimer Disease
Serum Amyloid A Protein
Curcumin

An EEG nicotinic acetylcholine index to assess the efficacy of pro-cognitive compounds

Simpraga, S., Mansvelder, H. D., Groeneveld, G. J., Prins, S., Hart, E. P., Poil, S. S. & Linkenkaer-Hansen, K., Nov 2018, In : Clinical Neurophysiology. 129, 11, p. 2325-2332 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Nicotinic Receptors
Mecamylamine
Cholinergic Agents
Acetylcholine
Electroencephalography

Animal models on the Yin and Yang of opioids and alcohol

Sun, Y., 2018, 116 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Catecholamines alter the intrinsic variability of cortical population activity and perception

Pfeffer, T., Avramiea, A. E., Nolte, G., Engel, A. K., Linkenkaer-Hansen, K. & Donner, T. H., 8 Feb 2018, In : PloS Biology. 16, 2, p. 1-32 32 p., e2003453.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
cholinergic agents
catecholamines
cognition
Catecholamines
Cognition

Cavitation-induced expansion dynamics of tin microdroplet target in EUV light sources

Kurilovich, D., Pinto, T., Schupp, R., Torretti, F., Scheers, J., Stodolna, A., Eikema, K. S., Witte, S., Ubachs, W., Hoekstra, R. & Versolato, O. O., Mar 2018, Compact EUV and X-ray Light Sources, EUVXRAY 2018. OSA - The Optical Society, Vol. Part F85-EUVXRAY 2018.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Tin
Cavitation
Light sources
Nanolithography
Lasers

Comparison of frequency and strain-rate domain mechanical characterization

Bartolini, L., Iannuzzi, D. & Mattei, G., 12 Sep 2018, In : Scientific Reports. 8, p. 1-11 11 p., 13697.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Strain rate
Indentation
Testing
Polydimethylsiloxane
Tissue

Compressive imaging through a multimode fiber

Amitonova, L. V. & De Boer, J. F., 1 Nov 2018, In : Optics Letters. 43, 21, p. 5427-5430 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

fibers
microscopy
raster scanning
speckle patterns
probes

Controlling ion kinetic energy distributions in laser produced plasma sources by means of a picosecond pulse pair

Stodolna, A. S., De Faria Pinto, T., Ali, F., Bayerle, A., Kurilovich, D., Mathijssen, J., Hoekstra, R., Versolato, O. O., Eikema, K. S. E. & Witte, S., 7 Aug 2018, In : Journal of Applied Physics. 124, 5, p. 1-6 6 p., 053303.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
picosecond pulses
laser plasmas
energy distribution
kinetic energy
pulses

Controlling the Temporal Structure of Brain Oscillations by Focused Attention Meditation

Irrmischer, M., Houtman, S. J., Mansvelder, H. D., Tremmel, M., Ott, U. & Linkenkaer-Hansen, K., Apr 2018, In : Human Brain Mapping. 39, 4, p. 1825-1838 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Meditation
Brain
Aptitude
Scalp
Electroencephalography

Criticality theory applied to the wandering mind and meditation

Irrmischer, M., 2018, 200 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Detection of periodic structures through opaque metal layers by optical measurements of ultrafast electron dynamics

Edward, S., Antoncecchi, A., Zhang, H., Sielcken, H., Witte, S. & Planken, P. C. M., 3 Sep 2018, In : Optics Express. 26, 18, p. 23380-23396 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
optical measurement
gold
gratings
metals
electron energy

Diagnostic capability of three-dimensional macular parameters for glaucoma using optical coherence tomography volume scans

Vercellin, A. C. V., Jassim, F., Poon, L. Y. C., Tsikata, E., Braaf, B., Shah, S., Ben-David, G., Shieh, E., Lee, R., Simavli, H., Que, C. J., Papadogeorgou, G., Guo, R., Vakoc, B. J., Bouma, B. E., de Boer, J. F. & Chen, T. C., 1 Oct 2018, In : Investigative Ophthalmology and Visual Science. 59, 12, p. 4998-5010 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Ganglia
Glaucoma
Cell Size
Nerve Fibers

Diffractive shear interferometry for extreme ultraviolet high-resolution lensless imaging

Jansen, G. S. M., de Beurs, A., Liu, X., Eikema, K. S. E. & Witte, S., 14 May 2018, In : Optics Express. 26, 10, p. 12479-12489 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
interferometry
shear
high resolution
far fields
harmonics

Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia

Abdellaoui, A., Boomsma, D. I., de Geus, E. JC., den Braber, A., Hottenga, J. J., W J H Penninx, B., Milaneschi, Y., van t Ent, D. & ENIGMA-CNV working group, 3 Oct 2018, In : Molecular Psychiatry.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Basal Ganglia
Globus Pallidus
Putamen
Brain
Schizophrenia

EEG Resting State Functional Connectivity in Adult Dyslexics Using Phase Lag Index and Graph Analysis

Fraga González, G., Smit, D. J. A., van der Molen, M. J. W., Tijms, J., Stam, C. J., de Geus, E. J. C. & van der Molen, M. W., 30 Aug 2018, In : Frontiers in Human Neuroscience. 12, p. 1-12 12 p., 341.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Dyslexia
Reading
Electroencephalography
Brain
Cognition

Effects of age, race, and ethnicity on the optic nerve and peripapillary region using spectral-domain OCT 3d volume scans

Poon, L. Y. C., Antar, H., Tsikata, E., Guo, R., Papadogeorgou, G., Freeman, M., Khoueir, Z., Lee, R., Shieh, E., Simavli, H., Que, C. J., de Boer, J. F. & Chen, T. C., 1 Nov 2018, In : Translational Vision Science and Technology. 7, 6, p. 1-13 13 p., 12.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optic Nerve
Nerve Fibers
Optics
Fibers
Optical tomography

Expansion Dynamics after Laser-Induced Cavitation in Liquid Tin Microdroplets

Kurilovich, D., Pinto, T. D. F., Torretti, F., Schupp, R., Scheers, J., Stodolna, A. S., Gelderblom, H., Eikema, K. S. E., Witte, S., Ubachs, W., Hoekstra, R. & Versolato, O. O., 2 Nov 2018, In : Physical Review Applied. 10, 5, p. 1-8 8 p., 054005.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
cavitation flow
tin
expansion
fluid dynamics
liquids

Exploring the role of low-frequency and rare exonic variants in alcohol and tobacco use

Marees, A. T., Hammerschlag, A. R., Bastarache, L., de Kluiver, H., Vorspan, F., van den Brink, W., Smit, D. J., Denys, D., Gamazon, E. R., Li-Gao, R., Breetvelt, E. J., de Groot, M. C. H., Galesloot, T. E., Vermeulen, S. H., Poppelaars, J. L., Souverein, P. C., Keeman, R., de Mutsert, R., Noordam, R., Rosendaal, F. R. & 13 othersStringa, N., Mook-Kanamori, D. O., Vaartjes, I., Kiemeney, L. A., den Heijer, M., van Schoor, N. M., Klungel, O. H., Maitland-Van der Zee, A. H., Schmidt, M. K., Polderman, T. J. C., van der Leij, A. R., Posthuma, D. & Derks, E. M., 1 Jul 2018, In : Drug and Alcohol Dependence. 188, p. 94-101 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Tobacco
Tobacco Use
Alcohols
Alcohol Drinking
Exome

Fast microplastics identification with stimulated Raman scattering microscopy

Zada, L., Leslie, H. A., Vethaak, A. D., Tinnevelt, G., Janssen, J., de Boer, J. F. & Ariese, F., Jul 2018, In : Journal of Raman Spectroscopy. 49, 7, p. 1136-1144 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Stimulated Raman scattering
Microscopic examination
Polymers
Plastics
Plastic products

Feasibility of using optical coherence tomography to detect acute radiation-induced esophageal damage in small animal models

Jelvehgaran, P., de Bruin, D. M., Salguero, F. J., Borst, G. R., Song, J-Y., van Leeuwen, T. G., de Boer, J. F., Alderliesten, T. & van Herk, M., 12 Apr 2018, In : Journal of Biomedical Optics. 23, 4, p. 1-12 12 p., 046004.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Feasibility of using optical coherence tomography to detect radiation-induced fibrosis and residual cancer extent after neoadjuvant chemo-radiation therapy: An ex vivo study

Jelvehgaran, P., Alderliesten, T., Georgiou, G., Meijer, S. L., Bloemen, P. R., Kodach, L. L., van Laarhoven, H. W. M., van Berge Henegouwen, M. I., Hulshof, M. C. C. M., Rasch, C. R. N., van Leeuwen, T. G., de Boer, J. F., de Bruin, M. & van Herk, M., 1 Sep 2018, In : Biomedical Optics Express. 9, 9, p. 4196-4216 21 p., #330772.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Radiation-Induced Neoplasms
Radiation Pneumonitis
fibrosis
Optical Coherence Tomography
Residual Neoplasm

Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity

Smit, D. J. A., Wright, M. J., Meyers, J. L., Martin, N. G., Ho, Y. Y. W., Malone, S. M., Zhang, J., Burwell, S. J., Chorlian, D. B., de Geus, E. J. C., Denys, D., Hansell, N. K., Hottenga, J. J., McGue, M., van Beijsterveldt, C. E. M., Jahanshad, N., Thompson, P. M., Whelan, C. D., Medland, S. E., Porjesz, B. & 2 othersLacono, W. G. & Boomsma, D. I., Nov 2018, In : Human Brain Mapping. 39, 11, p. 4183-4195 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
Psychiatry
Brain
Genes
Psychopathology

High resolution combined molecular and structural optical imaging of colorectal cancer in a xenograft mouse model

Feroldi, F., Verlaan, M., Knaus, H., Davidoiu, V., Vugts, D. J., Van Dongen, G. A. M. S., Molthoff, C. F. M. & De Boer, J. F., 1 Dec 2018, In : Biomedical Optics Express. 9, 12, p. 6186-6204 19 p., #346860.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Optical Imaging
Heterografts
mice
Colorectal Neoplasms
tumors

Imaging the structure and the movement of the retina with scanning light ophthalmoscopy

Vienola, K. V., 2018, 117 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File