Projects per year
Fingerprint
Dive into the research topics where Bio Informatics (IBIVU) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
-
dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
-
dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
-
dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
-
Dea Gogishvili
- Faculty of Science, Bioinformatics - External PhD Candidate
- AIMMS - External PhD Candidate
- Bio Informatics (IBIVU) - External PhD Candidate
Person: Academic
-
Soufyan Lakbir, MSc
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Bio Informatics (IBIVU) - PhD Candidate
Person: Academic
Projects
- 1 Finished
Research output
-
Considerations in the search for epistasis
Lorentz workshop on epistasis, Dec 2024, In: Genome Biology. 25, 1, p. 1-17 17 p., 296.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access -
Protein hide-and-seek: AI-driven exploration of dementia biomarkers
Gogishvili, D., 22 Nov 2024, 212 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile170 Downloads (Pure) -
Elastic-Degenerate String Matching with 1 Error or Mismatch
Bernardini, G., Gabory, E., Pissis, S. P., Stougie, L., Sweering, M. & Zuba, W., Oct 2024, In: Theory of Computing Systems. 68, 5, p. 1442-1467 26 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
High prevalence of chromosomal rearrangements and LINE retrotranspositions detected in formalin-fixed paraffin-embedded colorectal cancer tissue
Rubio-Alarcón, C., Stelloo, E., Vessies, D. C. L., van 't Erve, I., Mekkes, N. J., Swennenhuis, J., Lakbir, S., van Bree, E. J., Tijssen, M., Diemen, P. D., Lanfermeijer, M., Linders, T., van den Broek, D., Punt, C. J. A., Heringa, J., Meijer, G. A., Abeln, S., Feitsma, H. & Fijneman, R. J. A., 25 Sept 2024, (E-pub ahead of print) In: The Journal of molecular diagnostics. 26, 12, p. 1065-1080Research output: Contribution to Journal › Article › Academic › peer-review
-
Molecular strategies to quantify and control dormant and active state of mycobacteria
Priyanka, P., 24 Sept 2024, 216 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile144 Downloads (Pure)
Courses
-
PIPENN-EMB: Ensemble net and Protein Embeddings generalise Protein Interface Prediction beyond Homology
Anton Feenstra (Speaker) & David P.G. Thomas (Speaker)
18 Jun 2024Activity: Lecture / Presentation › Academic
-
Ensemble net and Protein Embeddings generalise Protein Interface Prediction beyond Homology
Anton Feenstra (Keynote speaker)
4 Nov 2024Activity: Lecture / Presentation › Academic
-
PIPENN: Protein Interface Prediction from sequence with an Ensemble of Neural Nets
Anton Feenstra (Invited speaker)
3 Nov 2022Activity: Lecture / Presentation › Academic
-
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
Anton Feenstra (Speaker)
19 May 2017Activity: Lecture / Presentation › Academic
-
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
Prizes
Datasets
-
Data from: Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks
Whiteside, M. D. (Contributor), Werner, G. D. A. (Contributor), Caldas, V. E. A. (Contributor), Van‘T Padje, A. (Contributor), Dupin, S. E. (Contributor), Elbers, B. (Contributor), Bakker, M. (Contributor), Wyatt, G. A. K. (Contributor), Klein, M. (Contributor), Hink, M. A. (Contributor), Postma, M. (Contributor), Vaitla, B. (Contributor), Noë, R. (Contributor), Shimizu, T. S. (Contributor), West, S. A. (Contributor) & Kiers, T. (Contributor), Unknown Publisher, 1 Jan 2019
DOI: 10.5061/dryad.n343sh3, http://datadryad.org/stash/dataset/doi:10.5061/dryad.n343sh3
Dataset / Software: Dataset
-
Dataset for the tutorial "pinpoint key pathways with Heinz"
Zhang, C. (Creator) & Abeln, S. (Creator), Zenodo, 2018
DOI: 10.5281/zenodo.1344105, https://zenodo.org/record/1344105
Dataset / Software: Dataset
-
Additional file 5 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582080, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582080
Dataset / Software: Dataset
-
Additional file 2 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582071.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582071/1
Dataset / Software: Dataset
-
Additional file 4 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582077.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582077/1
Dataset / Software: Dataset