Research output per year
Research output per year
Fingerprint
Dive into the research topics where Bio Informatics (IBIVU) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Network
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Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
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dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
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Juami van Gils, MSc
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Integrative Bioinformatics - PhD Candidate
Person: Academic
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Dea Gogishvili
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Bio Informatics (IBIVU) - PhD Candidate
Person: Academic
Research output
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Efficient Computation of Sequence Mappability
Charalampopoulos, P., Iliopoulos, C. S., Kociumaka, T., Pissis, S. P., Radoszewski, J. & Straszyński, J., May 2022, In: Algorithmica. 84, 5, p. 1418-1440 23 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Hide and Mine in Strings: Hardness, Algorithms, and Experiments
Bernardini, G., Conte, A., Gourdel, G., Grossi, R., Loukides, G., Pisanti, N., Pissis, S., Punzi, G., Stougie, L. & Sweering, M., 2022, (Accepted/In press) In: IEEE Transactions on Knowledge and Data Engineering.Research output: Contribution to Journal › Article › Academic › peer-review
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Kinetic Modeling of Saccharomyces cerevisiae Central Carbon Metabolism: Achievements, Limitations, and Opportunities
Lao-Martil, D., Verhagen, K. J. A., Schmitz, J. P. J., Teusink, B., Wahl, S. A. & van Riel, N. A. W., Jan 2022, In: Metabolites. 12, 1, 74.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access -
PIPENN: protein interface prediction from sequence with an ensemble of neural nets
Stringer, B., de Ferrante, H., Abeln, S., Heringa, J., Feenstra, K. A. & Haydarlou, R., 15 Apr 2022, In: Bioinformatics (Oxford, England). 38, 8, p. 2111-2118 8 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Selection for Cell Yield Does Not Reduce Overflow Metabolism in Escherichia coli
Rabbers, I., Gottstein, W., Feist, A. M., Teusink, B., Bruggeman, F. J. & Bachmann, H., 7 Jan 2022, In: Molecular biology and evolution. 39, 1, p. 1-10 10 p., msab345.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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Predicting side chain mobility from sequence by DynaMine
K.A. Feenstra (Speaker) & Wim F. Vranken (Speaker)
4 Feb 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Additional file 1: of Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. (Contributor), Santos, F. B. D. (Contributor), Hesseling, A. (Contributor), Uusitalo, J. (Contributor), Bachmann, H. (Contributor), Ladislau Benavente, V. (Contributor), Goel, A. (Contributor), Berkhout, J. (Contributor), Bruggeman, F. (Contributor), Marrink, S. (Contributor), Montalban-Lopez, M. (Contributor), Jong, A. (Contributor), Kok, J. (Contributor), Molenaar, D. (Contributor), Poolman, B. (Contributor), Teusink, B. (Contributor) & Kuipers, O. (Contributor), Unknown Publisher, 1 Oct 2019
DOI: 10.6084/m9.figshare.7576595.v1, https://springernature.figshare.com/articles/Additional_file_1_of_Adaption_to_glucose_limitation_is_modulated_by_the_pleotropic_regulator_CcpA_independent_of_selection_pressure_strength/7576595/1
Dataset
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Data from: Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks
Whiteside, M. D. (Contributor), Werner, G. D. A. (Contributor), Caldas, V. E. A. (Contributor), Van‘T Padje, A. (Contributor), Dupin, S. E. (Contributor), Elbers, B. (Contributor), Bakker, M. (Contributor), Wyatt, G. A. K. (Contributor), Klein, M. (Contributor), Hink, M. A. (Contributor), Postma, M. (Contributor), Vaitla, B. (Contributor), Noë, R. (Contributor), Shimizu, T. S. (Contributor), West, S. A. (Contributor) & Kiers, T. (Contributor), Unknown Publisher, 1 Jan 2019
DOI: 10.5061/dryad.n343sh3, http://datadryad.org/stash/dataset/doi:10.5061/dryad.n343sh3
Dataset