Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit

Sequence Alignment Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Chemical Compounds
Systems Biology Medicine & Life Sciences
Metabolic Networks and Pathways Medicine & Life Sciences
Lactococcus lactis Medicine & Life Sciences
Alignment Mathematics

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Profiles

Photo of Sanne Abeln

Sanne Abeln

Person: Academic

20052018
No photo of M.J.J. Dijkstra

M.J.J. Dijkstra

Person: Academic

20152018
Photo of K.A. Feenstra

K.A. Feenstra

Person: Academic

19962018
Photo of R. Haydarlou

R. Haydarlou

Person: Academic

20112016
No photo of J. Heringa

J. Heringa

Person: Academic

20032018

Research Output 2002 2018

An integrated model quantitatively describing metabolism, growth and cell cycle in budding yeast

Palumbo, P., Vanoni, M., Papa, F., Busti, S., Wortel, M., Teusink, B. & Alberghina, L. 2018 Artificial Life and Evolutionary Computation - 12th Italian Workshop, WIVACE 2017, Revised Selected Papers. Springer/Verlag, p. 165-180 16 p. (Communications in Computer and Information Science; vol. 830)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Integrated Model
Cell Cycle
Metabolism
Yeast
Cells

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A. 14 May 2018 In : Scientific Reports. 8, 1, p. 7522 7522

Research output: Contribution to journalArticle

Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes

Constraint-based models of microbial physiology: Surprisingly versatile

Teusink, B., Planqué, B., Molenaar, D. & Bruggeman, F. 1 Jan 2018 10th International Conference on Simulation and Modelling in the Food and Bio-Industry 2018, FOODSIM 2018. Eurosis, p. 5-10 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

microbial physiology
Physiology
Fluxes
Microbiological Phenomena
Growth

Deep sequencing identifies hepatitis B virus core protein signatures in chronic hepatitis B patients

van der Ree, M. H., Jansen, L., Welkers, M. R. A., Reesink, H. W., Feenstra, K. A. & Kootstra, N. A. 16 Aug 2018 In : Antiviral research. 158, p. 213-225 13 p.

Research output: Contribution to journalArticle

Open Access
File
Viral Core Proteins
High-Throughput Nucleotide Sequencing
Chronic Hepatitis B
Hepatitis B e Antigens
Hepatitis B virus

Dynamic elementary mode modelling of non-steady state flux data

Folch-Fortuny, A., Teusink, B., Hoefsloot, H. C. J., Smilde, A. K. & Ferrer, A. 18 Jun 2018 In : BMC Systems Biology. 12, p. 1-15 15 p., 71

Research output: Contribution to journalArticle

Open Access
Metabolic Flux Analysis
Fluxes
Discriminant Analysis
Metabolic Networks and Pathways
Modeling

Activities 2004 2017

  • 8 Lecture / Presentation
  • 1 Editorial work

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

Feenstra, K. (Speaker), Heringa, J. (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: ScientificLecture / Presentation

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

Feenstra, K. (Speaker), Heringa, J. (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: ScientificLecture / Presentation

Advances in single molecule sequencing and applications

Feenstra, K. (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: ScientificLecture / Presentation

Hybrid integration approach refines cancer typing and subtyping by incorporating four genome-wide omics platforms

Feenstra, K. (Speaker), E. Taskesen (Speaker)
2 Sep 2015

Activity: ScientificLecture / Presentation

Prizes

NWO Veni

S. Abeln (Recipient), 2011

Prize: ScientificPrize / Award

VICI personal grant

B. Teusink (Recipient), 1 Jan 2015

Prize: ScientificPrize / Award