Research Output per year
Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit
Sequence Alignment
Medicine & Life Sciences
Metabolic Networks and Pathways
Medicine & Life Sciences
Proteins
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Genes
Chemical Compounds
Systems Biology
Medicine & Life Sciences
Alignment
Mathematics
Lactococcus lactis
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Profiles
Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
Kees Burger
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Bio Informatics (IBIVU) - Research Associate
Person: Academic
K.A. Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
M. Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
R. Haydarlou
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
Research Output 2002 2019
Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.Research output: Contribution to Journal › Article › Academic › peer-review
strength (mechanics)
glucose
mutation
chemostat
fitness
A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris
Özcan, E., Selvi, S. S., Nikerel, E., Teusink, B., Toksoy Öner, E. & Çakır, T., 1 Jan 2019, In : Applied Microbiology and Biotechnology.Research output: Contribution to Journal › Article › Academic › peer-review
Metabolic Networks and Pathways
Citric Acid
Genome
Bacteria
phosphoketolase
Metabolomics: From Method Development to System Biology
Krumpochova, P., 2019, 215 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Reasoning about cell dynamics using network models
Jacobsen, A., 2019, 182 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates
de Groot, D. H., van Boxtel, C., Planque, R., Bruggeman, F. J. & Teusink, B., 11 Mar 2019, In : PLoS Computational Biology. 15, 3, p. 1-24 24 p., e1006858.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Metabolic Networks and Pathways
biochemical pathways
Pathway
enzyme
Fluxes
Activities 2004 2017
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes
K.A. Feenstra (Speaker), L. Xue (Speaker)4 Nov 2015
Activity: Lecture / Presentation › Academic