Research Output per year
Fingerprint Dive into the research topics where Bio Informatics (IBIVU) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Sequence Alignment
Medicine & Life Sciences
Proteins
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Metabolic Networks and Pathways
Medicine & Life Sciences
Systems Biology
Medicine & Life Sciences
Genes
Engineering & Materials Science
Alignment
Mathematics
Fluxes
Engineering & Materials Science
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Profiles
dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
Juami van Gils, MSc
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Integrative Bioinformatics - PhD Candidate
Person: Academic
dr. Maryam Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
Research Output 2002 2020
Elementary Growth Modes provide a molecular description of cellular self-fabrication
de Groot, D. H., Hulshof, J., Teusink, B., Bruggeman, F. J. & Planqué, R., 1 Jan 2020, In : PLoS Computational Biology. 16, 1, e1007559.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Fabrication
phenotype
Growth
Phenotype
enzyme kinetics
Facilities that make the PDB data collection more powerful
Lange, J., Baakman, C., Pistorius, A., Krieger, E., Hooft, R., Joosten, R. P. & Vriend, G., 1 Jan 2020, In : Protein Science. 29, 1, p. 330-344 15 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Databases
Computational Biology
Proteins
Bioinformatics
Software
Microdroplet screening and selection for improved microbial production of extracellular compounds
van Tatenhove-Pel, R. J., Hernandez-Valdes, J. A., Teusink, B., Kuipers, O. P., Fischlechner, M. & Bachmann, H., Feb 2020, In : Current Opinion in Biotechnology. 61, p. 72-81 10 p.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access
Fermentation
Screening
Emulsions
Throughput
Industry
The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints
de Groot, D. H., Lischke, J., Muolo, R., Planqué, R., Bruggeman, F. J. & Teusink, B., 1 Feb 2020, In : Cellular and Molecular Life Sciences. 77, 3, p. 441-453 13 p.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access
Growth
Metabolic Networks and Pathways
Saccharomyces cerevisiae
Theoretical Models
Adenosine Triphosphate
Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
strength (mechanics)
glucose
mutation
chemostat
fitness
Activities 2004 2017
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
Predicting side chain mobility from sequence by DynaMine
K.A. Feenstra (Speaker), Wim F. Vranken (Speaker)4 Feb 2015
Activity: Lecture / Presentation › Academic