Projects per year
Fingerprint
Collaborations and top research areas from the last five years
Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
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dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
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Dea Gogishvili
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Bio Informatics (IBIVU) - PhD Candidate
Person: Academic
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dr. Reza Haydarlou
- Faculty of Science, Bioinformatics - Lecturer
- Systems Bioinformatics - Lecturer
Person: Academic
Projects
- 1 Finished
Research output
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A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
Luzia, L., Battjes, J., Zwering, E., Jansen, D., Melkonian, C. & Teusink, B., 19 Jan 2024, In: iScience. 27, 1, p. 1-15 15 p., 108767.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Improving gene set enrichment analysis (GSEA) by using regulation directionality
Wang, B., Van Der Kloet, F., Kes, M. B. M. J., Luirink, J. & Hamoen, L. W., Mar 2024, In: Microbiology spectrum. 12, 3, p. 1-12 12 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Metabolic modeling of microorganisms and dynamics of microbial communities in the food industry
Mendoza Farías, S. N., 30 Jan 2024, 300 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile258 Downloads (Pure) -
Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph
Liu, T., Feenstra, K. A., Huang, Z. & Heringa, J., Jan 2024, In: Bioinformatics (Oxford, England). 40, 1, p. 1-9 9 p., btad771.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Protein aggregation, hydrophobicity and neurodegenerative disease
van Gils, J. H. M., 17 Jan 2024, 202 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile114 Downloads (Pure)
Courses
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Predicting side chain mobility from sequence by DynaMine
K.A. Feenstra (Speaker) & Wim F. Vranken (Speaker)
4 Feb 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Data from: Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks
Whiteside, M. D. (Contributor), Werner, G. D. A. (Contributor), Caldas, V. E. A. (Contributor), Van‘T Padje, A. (Contributor), Dupin, S. E. (Contributor), Elbers, B. (Contributor), Bakker, M. (Contributor), Wyatt, G. A. K. (Contributor), Klein, M. (Contributor), Hink, M. A. (Contributor), Postma, M. (Contributor), Vaitla, B. (Contributor), Noë, R. (Contributor), Shimizu, T. S. (Contributor), West, S. A. (Contributor) & Kiers, T. (Contributor), Unknown Publisher, 1 Jan 2019
DOI: 10.5061/dryad.n343sh3, http://datadryad.org/stash/dataset/doi:10.5061/dryad.n343sh3
Dataset
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Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
Elsemman, I. E. (Creator), Rodriguez Prado, A. (Creator), Grigaitis, P. (Creator), Garcia Albornoz, M. (Creator), Harman, V. (Creator), Holman, S. W. (Creator), van Heerden, J. H. (Creator), Bruggeman, F. (Creator), Bisschops, M. M. M. (Creator), Sonnenschein, N. (Creator), Hubbard, S. (Creator), Beynon, R. (Creator), Daran-Lapujade, P. (Creator), Nielsen, J. (Creator) & Teusink, B. (Creator), Zenodo, 2021
DOI: 10.5281/zenodo.5732995, https://zenodo.org/record/5732995
Dataset
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Additional file 5 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582080, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582080
Dataset
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Elevated energy costs of biomass production in mitochondrial-respiration deficient Saccharomyces cerevisiae
Grigaitis, P. (Contributor), van den Bogaard, S. L. (Contributor) & Teusink, B. (Contributor), Zenodo, 2022
DOI: 10.5281/zenodo.7322850, https://zenodo.org/record/7322850
Dataset
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Additional file 3 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582074.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582074/1
Dataset