Projects per year
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Dive into the research topics where Bio Informatics (IBIVU) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
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dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
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Dea Gogishvili
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Bio Informatics (IBIVU) - PhD Candidate
Person: Academic
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dr. Reza Haydarlou
- Faculty of Science, Bioinformatics - Lecturer
- Systems Bioinformatics - Lecturer
Person: Academic
Projects
- 1 Finished
Research output
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Benchmarking quantum chemical methods for accurate gas-phase structure predictions of carbonyl compounds: the case of ethyl butyrate
Sutikdja, L. W., Nguyen, H. V. L., Jelisavac, D., Stahl, W. & Mouhib, H., 21 Mar 2023, In: Physical Chemistry Chemical Physics. 25, 11, p. 7688-7696 9 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Bidirectional String Anchors for Improved Text Indexing and Top-K Similarity Search
Loukides, G., Pissis, S. P. & Sweering, M., 1 Nov 2023, In: IEEE Transactions on Knowledge and Data Engineering. 35, 11, p. 11093-11111 19 p.Research output: Contribution to Journal › Article › Academic › peer-review
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Clusters of co-abundant proteins in the brain cortex associated with fronto-temporal lobar degeneration
Bridel, C., van Gils, J. H. M., Miedema, S. S. M., Hoozemans, J. J. M., Pijnenburg, Y. A. L., Smit, A. B., Rozemuller, A. J. M., Abeln, S. & Teunissen, C. E., 23 Mar 2023, In: Alzheimer's Research and Therapy. 15, p. 1-18 18 p., 59.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Comparing Elastic-Degenerate Strings: Algorithms, Lower Bounds, and Applications
Gabory, E., Pisanti, N., Radoszewski, J., Zuba, W., Mwaniki, M. N., Pissis, S. P. & Sweering, M., 2023, 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023): [proceedings]. Bulteau, L. & Liptak, Z. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, p. 1-20 20 p. 11. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 259).Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
Open Access -
Computational Prediction Approaches for Predicting Mutation Impact on Protein-Protein Interactions
Ping, Y., Hoekstra, L. & Feenstra, A., 2023, Tenth International Conference on Applications and Techniques in Cyber Intelligence (ICATCI 2022): Volume 2. Abawajy, J. H., Xu, Z., Atiquzzaman, M. & Zhang, X. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 2. p. 401-409 9 p. (Lecture Notes on Data Engineering and Communications Technologies; vol. 169).Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic › peer-review
Courses
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes
K.A. Feenstra (Speaker) & L. Xue (Speaker)
4 Nov 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Dataset for the tutorial "pinpoint key pathways with Heinz"
Zhang, C. (Creator) & Abeln, S. (Creator), Zenodo, 2018
DOI: 10.5281/zenodo.1344105, https://zenodo.org/record/1344105
Dataset
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Additional file 5 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582080.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582080/1
Dataset
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Additional file 2 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582071.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582071/1
Dataset
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Additional file 4 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582077.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582077/1
Dataset
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Additional file 1: of Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. E. (Creator), Branco Dos Santos, F. (Contributor), Hesseling, A. (Creator), Uusitalo, J. J. (Creator), Bachmann, H. (Creator), Benavente, V. (Creator), Goel, A. (Contributor), Berkhout, J. (Creator), Bruggeman, F. (Creator), Marrink, S. (Contributor), Montalban-Lopez, M. (Creator), De Jong, A. (Contributor), Kok, J. (Creator), Molenaar, D. (Creator), Poolman, B. (Creator), Teusink, B. (Creator) & Kuipers, O. P. (Creator), Figshare, 2019
DOI: 10.6084/m9.figshare.7576595, https://springernature.figshare.com/articles/Additional_file_1_of_Adaption_to_glucose_limitation_is_modulated_by_the_pleotropic_regulator_CcpA_independent_of_selection_pressure_strength/7576595
Dataset