Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit

Sequence Alignment Medicine & Life Sciences
Metabolic Networks and Pathways Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Chemical Compounds
Systems Biology Medicine & Life Sciences
Alignment Mathematics
Lactococcus lactis Medicine & Life Sciences

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Profiles

Photo of Sanne Abeln

Sanne Abeln

Person: Academic

20052018
No photo of Kees Burger

Kees Burger

Person: Academic

Photo of K.A. Feenstra

K.A. Feenstra

Person: Academic

19962019
No photo of M. Hashemi Shabestari

M. Hashemi Shabestari

Person: Academic

20162018
Photo of R. Haydarlou

R. Haydarlou

Person: Academic

20112016

Research Output 2002 2019

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.

Research output: Contribution to JournalArticleAcademicpeer-review

strength (mechanics)
glucose
mutation
chemostat
fitness

A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris

Özcan, E., Selvi, S. S., Nikerel, E., Teusink, B., Toksoy Öner, E. & Çakır, T., 1 Jan 2019, In : Applied Microbiology and Biotechnology.

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic Networks and Pathways
Citric Acid
Genome
Bacteria
phosphoketolase

Metabolomics: From Method Development to System Biology

Krumpochova, P., 2019, 215 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Reasoning about cell dynamics using network models

Jacobsen, A., 2019, 182 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates

de Groot, D. H., van Boxtel, C., Planque, R., Bruggeman, F. J. & Teusink, B., 11 Mar 2019, In : PLoS Computational Biology. 15, 3, p. 1-24 24 p., e1006858.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Metabolic Networks and Pathways
biochemical pathways
Pathway
enzyme
Fluxes

Activities 2004 2017

  • 8 Lecture / Presentation
  • 1 Editorial work

Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation

K.A. Feenstra (Speaker), M.A. Huynen (Speaker)
23 Feb 2017

Activity: Lecture / PresentationAcademic

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: Lecture / PresentationAcademic

Advances in single molecule sequencing and applications

K.A. Feenstra (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: Lecture / PresentationAcademic

Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes

K.A. Feenstra (Speaker), L. Xue (Speaker)
4 Nov 2015

Activity: Lecture / PresentationAcademic

Prizes

NWO Veni

S. Abeln (Recipient), 2011

PrizeAcademic

VICI personal grant

B. Teusink (Recipient), 1 Jan 2015

PrizeAcademic