Research Output per year
Fingerprint Dive into the research topics where Bio Informatics (IBIVU) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Sequence Alignment
Medicine & Life Sciences
Proteins
Engineering & Materials Science
Metabolic Networks and Pathways
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Systems Biology
Medicine & Life Sciences
Genes
Engineering & Materials Science
Alignment
Mathematics
Fluxes
Engineering & Materials Science
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Profiles
Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
Maryam Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
R. Haydarlou
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
Huub Hoefsloot
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
Research Output 2002 2019
Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
strength (mechanics)
glucose
mutation
chemostat
fitness
A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris
Özcan, E., Selvi, S. S., Nikerel, E., Teusink, B., Toksoy Öner, E. & Çakır, T., 1 Jan 2019, In : Applied Microbiology and Biotechnology.Research output: Contribution to Journal › Article › Academic › peer-review
Metabolic Networks and Pathways
Citric Acid
Genome
Bacteria
phosphoketolase
A systematic assessment of current genome-scale metabolic reconstruction tools
Mendoza, S. N., Olivier, B. G., Molenaar, D. & Teusink, B., 7 Aug 2019, In : Genome Biology. 20, 1, 158.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Software
genome
Genome
software
Benchmarking
Finding functional differences between species in a microbial community: Case studies in wine fermentation and Kefir culture
Melkonian, C., Gottstein, W., Blasche, S., Kim, Y., Abel-Kistrup, M., Swiegers, H., Saerens, S., Edwards, N., Patil, K. R., Teusink, B. & Molenaar, D., 25 Jun 2019, In : Frontiers in Microbiology. 10, JUNE, p. 1-14 14 p., 01347.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Wine
Fermentation
Metagenomics
Gluconobacter
Pantoea
Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using ConsDYN enhanced sampling
Mouhib, H., Higuchi, A., Abeln, S., Yura, K. & Feenstra, K. A., 22 Mar 2019, In : F1000Research. 8, p. 322Research output: Contribution to Journal › Article › Academic
Open Access
Facilitative Glucose Transport Proteins
Sampling
Mutation
Glucose Transporter Type 1
Molecular dynamics
Activities 2004 2017
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting favorable interactions amongst available candidates: A coarse-grained simulation approach to scoring docking decoys.
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)8 Dec 2015
Activity: Lecture / Presentation › Academic