Bio Informatics (IBIVU) — Vrije Universiteit Amsterdam

Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit

Sequence Alignment Medicine & Life Sciences

Proteins Medicine & Life Sciences

Genome Medicine & Life Sciences

Genes Chemical Compounds

Systems Biology Medicine & Life Sciences

Metabolic Networks and Pathways Medicine & Life Sciences

Lactococcus lactis Medicine & Life Sciences

Alignment Mathematics

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Profiles

Sanne Abeln

s.abeln@vu.nl

Faculty of Science, Bioinformatics - Associate Professor
AIMMS - Assistant Professor
Integrative Bioinformatics - Assistant Professor

Person: Academic

M.J.J. Dijkstra

m.j.j.dijkstra@vu.nl

Faculty of Science, Bioinformatics - Standard PhD Candidate
AIMMS - Standard PhD Candidate
Network Institute - Standard PhD Candidate
Theoretical Computer Science - Standard PhD Candidate
Integrative Bioinformatics - Standard PhD Candidate

Person: Academic

K.A. Feenstra

k.a.feenstra@vu.nl

Faculty of Science, Bioinformatics - Assistant Professor
AIMMS - Assistant Professor
Integrative Bioinformatics - Assistant Professor

Person: Academic

R. Haydarlou

r.haydarlou@vu.nl

Faculty of Science, Bioinformatics - Visiting Fellow
AIMMS - Visiting Fellow
Integrative Bioinformatics - Visiting Fellow

Person: Academic

J. Heringa

j.heringa@vu.nl

Faculty of Science, Computer Science - Full Professor
AIMMS - Full Professor
Integrative Bioinformatics - Full Professor

Person: Academic

Research Output 2002 2018

187 Article
11 Chapter
10 Conference contribution
8 PhD Thesis - Research VU, graduation VU
9 More

An integrated model quantitatively describing metabolism, growth and cell cycle in budding yeast

Palumbo, P., Vanoni, M., Papa, F., Busti, S., Wortel, M., Teusink, B. & Alberghina, L. 2018 Artificial Life and Evolutionary Computation - 12th Italian Workshop, WIVACE 2017, Revised Selected Papers. Springer/Verlag, p. 165-180 16 p. (Communications in Computer and Information Science; vol. 830)

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Integrated Model

Cell Cycle

Metabolism

Yeast

Cells

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A. 14 May 2018 In : Scientific Reports. 8, 1, p. 7522 7522

Research output: Contribution to journal › Article

Open Access

Aurora Kinase A

Colorectal Neoplasms

Cell Line

Protein Interaction Maps

Genes

Constraint-based models of microbial physiology: Surprisingly versatile

Teusink, B., Planqué, B., Molenaar, D. & Bruggeman, F. 1 Jan 2018 10th International Conference on Simulation and Modelling in the Food and Bio-Industry 2018, FOODSIM 2018. Eurosis, p. 5-10 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

microbial physiology

Physiology

Fluxes

Microbiological Phenomena

Growth

Deep sequencing identifies hepatitis B virus core protein signatures in chronic hepatitis B patients

van der Ree, M. H., Jansen, L., Welkers, M. R. A., Reesink, H. W., Feenstra, K. A. & Kootstra, N. A. 16 Aug 2018 In : Antiviral research. 158, p. 213-225 13 p.

Research output: Contribution to journal › Article

Open Access

File

Viral Core Proteins

High-Throughput Nucleotide Sequencing

Chronic Hepatitis B

Hepatitis B e Antigens

Hepatitis B virus