Research output per year
Research output per year
Fingerprint
Dive into the research topics where Bio Informatics (IBIVU) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Network
Recent external collaboration on country level. Dive into details by clicking on the dots or
Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
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dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
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Juami van Gils, MSc
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Integrative Bioinformatics - PhD Candidate
Person: Academic
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dr. Maryam Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
Research output
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Circular pattern matching with k mismatches
Charalampopoulos, P., Kociumaka, T., Pissis, S. P., Radoszewski, J., Rytter, W., Straszyński, J., Waleń, T. & Zuba, W., Feb 2021, In : Journal of Computer and System Sciences. 115, p. 73-85 13 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Dynamic co-culture metabolic models reveal the fermentation dynamics, metabolic capacities and interplays of cheese starter cultures
Özcan, E., Seven, M., Şirin, B., Çakır, T., Nikerel, E., Teusink, B. & Toksoy Öner, E., Jan 2021, In : Biotechnology and Bioengineering. 118, 1, p. 223-237 15 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Influence maximization in the presence of vulnerable nodes: A ratio perspective
Chen, H., Loukides, G., Pissis, S. P. & Chan, H., 8 Jan 2021, In : Theoretical Computer Science. 852, p. 84-103 20 p.Research output: Contribution to Journal › Article › Academic › peer-review
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Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
Blasche, S., Kim, Y., Mars, R. A. T., Machado, D., Maansson, M., Kafkia, E., Milanese, A., Zeller, G., Teusink, B., Nielsen, J., Benes, V., Neves, R., Sauer, U. & Patil, K. R., Feb 2021, In : NATURE MICROBIOLOGY. 6, 2, p. 196-208 13 p.Research output: Contribution to Journal › Article › Academic › peer-review
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Predicting the relationships between gut microbiota and mental disorders with knowledge graphs
Liu, T., Pan, X., Wang, X., Feenstra, K. A., Heringa, J. & Huang, Z., Dec 2021, In : Health information science and systems. 9, 1, p. 3Research output: Contribution to Journal › Article › Academic › peer-review
Activities
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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Predicting side chain mobility from sequence by DynaMine
K.A. Feenstra (Speaker) & Wim F. Vranken (Speaker)
4 Feb 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Additional file 1: of Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. (Contributor), Santos, F. B. D. (Contributor), Hesseling, A. (Contributor), Uusitalo, J. (Contributor), Bachmann, H. (Contributor), Ladislau Benavente, V. (Contributor), Goel, A. (Contributor), Berkhout, J. (Contributor), Bruggeman, F. (Contributor), Marrink, S. (Contributor), Montalban-Lopez, M. (Contributor), Jong, A. (Contributor), Kok, J. (Contributor), Molenaar, D. (Contributor), Poolman, B. (Contributor), Teusink, B. (Contributor) & Kuipers, O. (Contributor), Unknown Publisher, 1 Oct 2019
DOI: 10.6084/m9.figshare.7576595.v1, https://springernature.figshare.com/articles/Additional_file_1_of_Adaption_to_glucose_limitation_is_modulated_by_the_pleotropic_regulator_CcpA_independent_of_selection_pressure_strength/7576595/1
Dataset
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Data from: Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks
Whiteside, M. D. (Contributor), Werner, G. D. A. (Contributor), Caldas, V. E. A. (Contributor), Van‘T Padje, A. (Contributor), Dupin, S. (Contributor), Elbers, B. (Contributor), Bakker, M. (Contributor), Wyatt, G. A. K. (Contributor), Klein, M. (Contributor), Hink, M. A. (Contributor), Postma, M. (Contributor), Vaitla, B. (Contributor), Noë, R. (Contributor), Shimizu, T. S. (Contributor), West, S. A. (Contributor) & Kiers, T. (Contributor), Unknown Publisher, 1 Jan 2019
DOI: 10.5061/dryad.n343sh3, http://datadryad.org/stash/dataset/doi:10.5061/dryad.n343sh3
Dataset