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Sequence Alignment Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genes Chemical Compounds
Systems Biology Medicine & Life Sciences
Genome Medicine & Life Sciences
Alignment Mathematics
Metabolic Networks and Pathways Medicine & Life Sciences
Protein Mathematics

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Profiles

Photo of Sanne Abeln

dr. Sanne Abeln

Person: Academic

20052019
Photo of Evert Bosdriesz

dr. Evert Bosdriesz

Person: Academic

20132019
Photo of Anton Feenstra

dr. ir. Anton Feenstra

Person: Academic

19962019
No photo of Juami Gils, van

Research Output 1996 2020

Facilities that make the PDB data collection more powerful

Lange, J., Baakman, C., Pistorius, A., Krieger, E., Hooft, R., Joosten, R. P. & Vriend, G., 1 Jan 2020, In : Protein Science. 29, 1, p. 330-344 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Databases
Computational Biology
Proteins
Bioinformatics
Software

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
strength (mechanics)
glucose
mutation
chemostat
fitness

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Wilkinson, M. D., Dumontier, M., Jan Aalbersberg, I., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J. W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 othersGray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., Hoen, P. A. C. T., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S. A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Jan Velterop, V., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 19 Mar 2019, In : Scientific Data. 6, p. 1-1 1 p., 6.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A framework for exhaustive modelling of genetic interaction pattern using Petri nets

Jacobsen, A., Ivanova, O., Amini, S., Heringa, J., Kemmeren, P. & Feenstra, K. A., 17 Dec 2019, In : Bioinformatics.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Petri nets
Petri Nets
Genes
Phenotype
Biological Phenomena

Diversity of SpaP in genetic and salivary agglutinin mediated adherence among Streptococcus mutans strains

Yang, J., Deng, D., Brandt, B. W., Nazmi, K., Wu, Y., Crielaard, W. & Ligtenberg, A. J. M., 1 Dec 2019, In : Scientific Reports. 9, 1, 19943.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Streptococcus mutans
Agglutinins
Genotype
Nonsense Codon
Tooth

Activities 2004 2017

  • 8 Lecture / Presentation
  • 1 Editorial work

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: Lecture / PresentationAcademic

Advances in single molecule sequencing and applications

K.A. Feenstra (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: Lecture / PresentationAcademic

Predicting side chain mobility from sequence by DynaMine

K.A. Feenstra (Speaker), Wim F. Vranken (Speaker)
4 Feb 2015

Activity: Lecture / PresentationAcademic

Prizes

NWO Veni

Sanne Abeln (Recipient), 2011

PrizeAcademic