Projects per year
Fingerprint
Collaborations and top research areas from the last five years
Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
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dr. Evert Bosdriesz
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Bio Informatics (IBIVU) - Assistant Professor
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
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Dea Gogishvili
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Bio Informatics (IBIVU) - PhD Candidate
Person: Academic
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dr. Reza Haydarlou
- Faculty of Science, Bioinformatics - Lecturer
- Systems Bioinformatics - Lecturer
Person: Academic
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Targeting chromosomal breakpoint structural variants in colorectal cancer
1/10/21 → 30/09/24
Project: Research
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Multi-omics Interdisciplinary Research Integration to Address DEmentia diagnosis.
Abeln, S., Gogishvili, D., Waury, K. & Heringa, J.
1/11/19 → 31/08/24
Project: Research
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ELIXIR-NL Digital Research Infrastructure for Life Sciences.
Feenstra, A. & Donkervliet, J.
1/09/18 → 31/08/20
Project: Research
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Delineating entropic contributions in beta-strand formation.
Abeln, S., Hashemi Shabestari, M. & van Gils, J.
1/08/18 → 30/09/23
Project: Research
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Research output
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Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph
Liu, T., Feenstra, K. A., Huang, Z. & Heringa, J., Jan 2024, In: Bioinformatics (Oxford, England). 40, 1, p. 1-9 9 p., btad771.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Pathway analysis through mutual information
Jeuken, G. S. & Käll, L., Jan 2024, In: Bioinformatics. 40, 1, p. 1-10 10 p., btad776.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Protein aggregation, hydrophobicity and neurodegenerative disease
van Gils, J. H. M., 17 Jan 2024, 202 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile114 Downloads (Pure) -
The key artificial intelligence technologies in early childhood education: a review
Yi, H., Liu, T. & Lan, G., 2024, In: Artificial Intelligence Review. 57, p. 1-36 36 p., 12.Research output: Contribution to Journal › Article › Academic › peer-review
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Benchmarking quantum chemical methods for accurate gas-phase structure predictions of carbonyl compounds: the case of ethyl butyrate
Sutikdja, L. W., Nguyen, H. V. L., Jelisavac, D., Stahl, W. & Mouhib, H., 21 Mar 2023, In: Physical Chemistry Chemical Physics. 25, 11, p. 7688-7696 9 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Courses
Activities
- 8 Lecture / Presentation
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Predicting side chain mobility from sequence by DynaMine
K.A. Feenstra (Speaker) & Wim F. Vranken (Speaker)
4 Feb 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Data from: Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks
Whiteside, M. D. (Contributor), Werner, G. D. A. (Contributor), Caldas, V. E. A. (Contributor), Van‘T Padje, A. (Contributor), Dupin, S. E. (Contributor), Elbers, B. (Contributor), Bakker, M. (Contributor), Wyatt, G. A. K. (Contributor), Klein, M. (Contributor), Hink, M. A. (Contributor), Postma, M. (Contributor), Vaitla, B. (Contributor), Noë, R. (Contributor), Shimizu, T. S. (Contributor), West, S. A. (Contributor) & Kiers, T. (Contributor), Unknown Publisher, 1 Jan 2019
DOI: 10.5061/dryad.n343sh3, http://datadryad.org/stash/dataset/doi:10.5061/dryad.n343sh3
Dataset
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MOESM2 of The microbiome associated with equine periodontitis and oral health
Kennedy, R. (Contributor), Lappin, D. (Contributor), Dixon, P. (Contributor), Buijs, M. (Contributor), Zaura, E. (Contributor), Crielaard, W. (Contributor), OâDonnell, L. (Contributor), Bennett, D. (Contributor), Brandt, B. (Contributor) & Riggio, M. (Contributor), Unknown Publisher, 14 Apr 2016
DOI: 10.6084/m9.figshare.c.3644585_d1.v1, https://springernature.figshare.com/articles/dataset/MOESM2_of_The_microbiome_associated_with_equine_periodontitis_and_oral_health/4469414/1
Dataset
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Additional file 5 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582080, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582080
Dataset
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Additional file 3 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582074.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582074/1
Dataset
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Additional file 5 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582080.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582080/1
Dataset