Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit

Sequence Alignment Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genes Chemical Compounds
Systems Biology Medicine & Life Sciences
Genome Medicine & Life Sciences
Metabolic Networks and Pathways Medicine & Life Sciences
Alignment Mathematics
Protein Mathematics

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Profiles

Photo of Sanne Abeln

Sanne Abeln

Person: Academic

20052018
No photo of F. Branco dos Santos
20092019
No photo of Kees Burger

Kees Burger

Person: Academic

Photo of K.A. Feenstra

K.A. Feenstra

Person: Academic

19962019
No photo of M. Hashemi Shabestari

M. Hashemi Shabestari

Person: Academic

20162018

Research Output 1996 2019

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.

Research output: Contribution to JournalArticleAcademicpeer-review

strength (mechanics)
glucose
mutation
chemostat
fitness

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Wilkinson, M. D., Dumontier, M., Jan Aalbersberg, I., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J. W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 othersGray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., Hoen, P. A. C. T., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S. A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Jan Velterop, V., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 19 Mar 2019, In : Scientific Data. 6, p. 1-1 1 p., 6.

Research output: Contribution to JournalArticleAcademicpeer-review

Reasoning about cell dynamics using network models

Jacobsen, A., 2019, 182 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A., 14 May 2018, In : Scientific Reports. 8, 1, p. 7522 7522.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes

Deep sequencing identifies hepatitis B virus core protein signatures in chronic hepatitis B patients

van der Ree, M. H., Jansen, L., Welkers, M. R. A., Reesink, H. W., Feenstra, K. A. & Kootstra, N. A., Oct 2018, In : Antiviral research. 158, p. 213-225 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Viral Core Proteins
High-Throughput Nucleotide Sequencing
Chronic Hepatitis B
Hepatitis B e Antigens
Hepatitis B virus

Activities 2004 2017

  • 8 Lecture / Presentation
  • 1 Editorial work

Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation

K.A. Feenstra (Speaker), M.A. Huynen (Speaker)
23 Feb 2017

Activity: Lecture / PresentationAcademic

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: Lecture / PresentationAcademic

Advances in single molecule sequencing and applications

K.A. Feenstra (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: Lecture / PresentationAcademic

Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes

K.A. Feenstra (Speaker), L. Xue (Speaker)
4 Nov 2015

Activity: Lecture / PresentationAcademic

Prizes

NWO Veni

S. Abeln (Recipient), 2011

PrizeAcademic