Biophotonics and Medical Imaging

Research Output 1986 2020

Filter
Article
2020

Optical coherence tomography angiography in preclinical Alzheimer's disease

van de Kreeke, J. A., Nguyen, H-T., Konijnenberg, E., Tomassen, J., den Braber, A., Ten Kate, M., Yaqub, M., van Berckel, B., Lammertsma, A. A., Boomsma, D. I., Tan, S. H., Verbraak, F. & Visser, P. J., Feb 2020, In : British Journal of Ophthalmology. 104, 2, p. 157-161 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Angiography
Alzheimer Disease
Amyloid
Monozygotic Twins

Photoacoustic spectroscopy for gas sensing: A comparison between piezoelectric and interferometric readout in custom quartz tuning forks

Dello Russo, S., Zhou, S., Zifarelli, A., Patimisco, P., Sampaolo, A., Giglio, M., Iannuzzi, D. & Spagnolo, V., 8 Jan 2020, In : Photoacoustics. 17, p. 1-7 7 p., 100155.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
forks
photoacoustic spectroscopy
Quartz
readout
Spectrum Analysis

Sensitivity analysis of Raman endoscopy with and without wavefront shaping

Amitonova, L. V. & de Boer, J. F., 3 Feb 2020, In : Optics Express. 28, 3, p. 3779-3788 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

sensitivity analysis
fibers
probes
endoscopes
sensitivity

The search for a unique Raman signature of amyloid-beta plaques in human brain tissue from Alzheimer's disease patients

Lochocki, B., Morrema, T. H. J., Ariese, F., Hoozemans, J. J. M. & de Boer, J. F., 2020, In : Analyst.

Research output: Contribution to JournalArticleAcademicpeer-review

Amyloid Plaques
Amyloid
brain
Brain
Alzheimer Disease
2019

A fiber-tip photoacoustic sensor for in situ trace gas detection

Zhou, S. & Iannuzzi, D., Feb 2019, In : Review of Scientific Instruments. 90, 2, p. 1-8 8 p., 023102.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photoacoustic effect
Photoacoustic spectroscopy
Fermentation
fermentation
photoacoustic spectroscopy

Bioactivity Profiling of Small-Volume Samples by Nano Liquid Chromatography Coupled to Microarray Bioassaying Using High-Resolution Fractionation

Zietek, B. M., Still, K. B. M., Jaschusch, K., Bruyneel, B., Ariese, F., Brouwer, T. J. F., Luger, M., Limburg, R. J., Rosier, J. C., V Iperen, D. J., Casewell, N. R., Somsen, G. W. & Kool, J., 20 Aug 2019, In : Analytical Chemistry. 91, 16, p. 10458-10466 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Bioassay
Liquid chromatography
Microarrays
Fractionation
Bioactivity

Blind focusing through strongly scattering media using wavefront shaping with nonlinear feedback

Osnabrugge, G., Amitonova, L. V. & Vellekoop, I. M., 15 Apr 2019, In : Optics Express. 27, 8, p. 11673-11688 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

nonlinear feedback
scattering
light modulators
light scattering
nonlinearity

Circular spectropolarimetric sensing of higher plant and algal chloroplast structural variations

Patty, C. H. L., Ariese, F., Buma, W. J., ten Kate, I. L., van Spanning, R. J. M. & Snik, F., May 2019, In : Photosynthesis Research. 140, 2, p. 129-139

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Circular Spectropolarimetric Sensing of Vegetation in the Field: Possibilities for the Remote Detection of Extraterrestrial Life

Patty, C. H. L., Ten Kate, I. L., Buma, W. J., Van Spanning, R. J. M., Steinbach, G., Ariese, F. & Snik, F., 3 Oct 2019, In : Astrobiology. 19, 10, p. 1221-1229 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Exobiology
extraterrestrial life
circular polarization
vegetation
polarization

Classification and treatment follow-up of a juxtapapillary retinal hemangioblastoma with optical coherence tomography angiography

Smid, L. M., van Overdam, K. A., Davidoiu, V., de Jong, J. H., de Boer, J. F., Vermeer, K. A. & van Velthoven, M. E. J., 1 Sep 2019, In : American Journal of Ophthalmology Case Reports. 15, 100472.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Hemangioblastoma
Optical Coherence Tomography
Angiography
Growth
Therapeutics

Diagnostic capability of 3d peripapillary retinal volume for glaucoma using optical coherence tomography customized software

Liu, Y., Jassim, F., Braaf, B., Khoueir, Z., Poon, L. Y. C., Ben-David, G. S., Papadogeorgou, G., Tsikata, E., Simavli, H., Que, C., Lee, R., Shieh, E., Vakoc, B. J., Bouma, B. E., De Boer, J. F. & Chen, T. C., Aug 2019, In : Journal of Glaucoma. 28, 8, p. 708-717 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Nerve Fibers
Glaucoma
Software
Artifacts

Fully coupled model for frequency response simulation of miniaturized cantilever-based photoacoustic gas sensors

Zhou, S., 2 Nov 2019, In : Sensors (Switzerland). 19, 21, p. 1-10 10 p., 4772.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photoacoustic effect
Chemical sensors
frequency response
Frequency response
Gases

How does upper extremity Fugl-Meyer motor score relate to resting-state EEG in chronic stroke? A power spectral density analysis

Saes, M., Meskers, C. G. M., Daffertshofer, A., de Munck, J. C., Kwakkel, G. & van Wegen, E. E. H., 1 May 2019, In : Clinical Neurophysiology. 130, 5, p. 856-862 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Upper Extremity
Electroencephalography
Stroke
Brain
Survivors

Immersion photoacoustic spectrometer (iPAS) for arcing fault detection in power transformers

Zhou, S. & Iannuzzi, D., 1 Aug 2019, In : Optics Letters. 44, 15, p. 3741-3744 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
fault detection
transformers
submerging
spectrometers
oils

Interleaved Silicon Nitride AWG Spectrometers

Akca, B. I. & Doerr, C. R., 1 Jan 2019, In : IEEE Photonics Technology Letters. 31, 1, p. 90-93

Research output: Contribution to JournalArticleAcademicpeer-review

Investigating the effects of mechanical stimulation on retinal ganglion cell spontaneous spiking activity

Marrese, M., Lonardoni, D., Boi, F., van Hoorn, H., Maccione, A., Zordan, S., Iannuzzi, D. & Berdondini, L., 27 Sep 2019, In : Frontiers in Neuroscience. 13, SEPTEMBER, p. 1-13 13 p., 1023.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Retinal Ganglion Cells
Retina
Physiological Phenomena
Electrodes
Equipment and Supplies

In vivo multifunctional optical coherence tomography at the periphery of the lungs

Feroldi, F., Willemse, J., Davidoiu, V., Gräfe, M. G. O., van Iperen, D. J., Goorsenberg, A. W. M., Annema, J. T., Daniels, J. M. A., Bonta, P. I. & de Boer, J. F., 1 Jun 2019, In : Biomedical Optics Express. 10, 6, p. 3070

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Optical Coherence Tomography
smooth muscle
lungs
tomography
asthma

In vivo subdiffuse scanning laser oximetry of the human retina

Damodaran, M., Amelink, A., Feroldi, F., Lochocki, B., Davidoiu, V. & de Boer, J. F., 1 Sep 2019, In : Journal of biomedical optics. 24, 9, p. 1-14 14 p., 096009.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
oximetry
retina
Scanning
scanning
Lasers

Optical coherence tomography (OCT) to image active and inactive retinoblastomas as well as retinomas

Nadiarnykh, O., McNeill-Badalova, N. A., Gaillard, M-C., Bosscha, M. I., Fabius, A. W. M., Verbraak, F. D., Munier, F. L., de Boer, J. F. & Moll, A. C., 26 Aug 2019, In : Acta Ophthalmologica. 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Optical coherence tomography velocimetry based on decorrelation estimation of phasor pair ratios (DEPPAIR)

Gräfe, M. G. O., Nadiarnykh, O. & de Boer, J. F., 1 Nov 2019, In : Biomedical Optics Express. 10, 11, p. 5470-5485 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Rheology
Optical Coherence Tomography
Uncertainty
tomography
Doppler Effect

Optic axis uniformity as a metric to improve the contrast of birefringent structures and analyze the retinal nerve fiber layer in polarization-sensitive optical coherence tomography

Willemse, J., Gräfe, M. G. O., van de Kreeke, J. A., Feroldi, F., Verbraak, F. D. & de Boer, J. F., 1 Aug 2019, In : Optics Letters. 44, 15, p. 3893-3896

Research output: Contribution to JournalArticleAcademicpeer-review

nerve fibers
tomography
optics
birefringence
polarization

Phase-based OCT angiography in diagnostic imaging of pediatric retinoblastoma patients: abnormal blood vessels in post-treatment regression patterns

Nadiarnykh, O., Davidoiu, V., Grafe, M. G. O., Bosscha, M., Moll, A. C. & De Boer, J. F., 1 May 2019, In : Biomedical Optics Express. 10, 5, p. 2228-2241

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

PH dependence, kinetics and light-harvesting regulation of nonphotochemical quenching in Chlamydomonas

Tian, L., Nawrocki, W. J., Liu, X., Polukhina, I., Van Stokkum, I. H. M. & Croce, R., 23 Apr 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8320-8325 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Chlamydomonas
Light
Bryophyta
Chlamydomonas reinhardtii
Diatoms

Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

Konold, P. E., Van Stokkum, I. H. M., Muzzopappa, F., Wilson, A., Groot, M. L., Kirilovsky, D. & Kennis, J. T. M., 9 Jan 2019, In : Journal of the American Chemical Society. 141, 1, p. 520-530 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Secondary Protein Structure
Carotenoids
Proteins
Structural dynamics
Hydrogen

Precision analysis and optimization in phase decorrelation OCT velocimetry

Gräfe, M. G. O., Gondre, M. & de Boer, J. F., 1 Mar 2019, In : Biomedical Optics Express. 10, 3, p. 1297-1314 18 p., 351615.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Rheology
optimization
flow velocity
axial flow
Optical Coherence Tomography

Quantitative Third Harmonic Generation Microscopy for Assessment of Glioma in Human Brain Tissue

Zhang, Z., de Munck, J. C., Verburg, N., Rozemuller, A. J., Vreuls, W., Cakmak, P., van Huizen, L. M. G., Idema, S., Aronica, E., de Witt Hamer, P. C., Wesseling, P. & Groot, M. L., 5 Jun 2019, In : Advanced Science. 6, 11, 1900163.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Harmonic generation
Glioma
brain
Microscopy
Brain

Retinal layer thickness in preclinical Alzheimer's disease

van de Kreeke, J. A., Nguyen, H-T., den Haan, J., Konijnenberg, E., Tomassen, J., den Braber, A., Ten Kate, M., Collij, L., Yaqub, M., van Berckel, B., Lammertsma, A. A., Boomsma, D. I., Tan, H. S., Verbraak, F. D. & Visser, P. J., Dec 2019, In : Acta Ophthalmologica. 97, 8, p. 798-804 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Alzheimer Disease
Nerve Fibers
Amyloid
Biomarkers
Monozygotic Twins

Tensor regularized total variation for denoising of third harmonic generation images of brain tumors

Zhang, Z., Groot, M. L. & de Munck, J. C., 1 Jan 2019, In : Journal of biophotonics. 12, 1, p. 1-13 13 p., e201800129.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Harmonic generation
Brain Neoplasms
brain
Tensors
Tumors

The evaluation of time-resolved Raman spectroscopy for the suppression of background fluorescence from space-relevant samples

Hanke, F., Mooij, B. J. A., Ariese, F. & Böttger, U., 1 Jul 2019, In : Journal of Raman Spectroscopy. 50, 7, p. 969-982 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Raman spectroscopy
Fluorescence
Carbonate minerals
Space research
Apatites

Three-dimensional optical coherence tomography imaging for glaucoma associated with boston keratoprosthesis type i and II

Khoueir, Z., Jassim, F., Braaf, B., Poon, L. Y. C., Tsikata, E., Chodosh, J., Dohlman, C. H., Vakoc, B. J., Bouma, B. E., De Boer, J. F. & Chen, T. C., Aug 2019, In : Journal of Glaucoma. 28, 8, p. 718-726 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Glaucoma
Optic Disk
Nerve Fibers
Artifacts
2018

70 μm diameter optical probe for common-path optical coherence tomography in air and liquids

Marrese, M., Offerhaus, H., Paardekam, E. & Iannuzzi, D., 15 Dec 2018, In : Optics Letters. 43, 24, p. 5929-5932 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
optical paths
tomography
barium
probes
air

Amyloid-beta and phosphorylated tau in post-mortem Alzheimer's disease retinas

den Haan, J., Morrema, T. H. J., Verbraak, F. D., de Boer, J. F., Scheltens, P., Rozemuller, A. J., Bergen, A. A. B., Bouwman, F. H. & Hoozemans, J. J., 28 Dec 2018, In : Acta Neuropathologica Communications. 6, p. 1-11 11 p., 147.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Amyloid
Retina
Alzheimer Disease
Serum Amyloid A Protein
Curcumin

Angular scanning and variable wavelength surface plasmon resonance allowing free sensor surface selection for optimum material- and bio-sensing

Lakayan, D., Tuppurainen, J., Albers, M., van Lint, M. J., van Iperen, D. J., Weda, J. J. A., Kuncova-Kallio, J., Somsen, G. W. & Kool, J., 15 Apr 2018, In : Sensors and Actuators, B: Chemical. 259, 15 April, p. 972-979 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Surface plasmon resonance
surface plasmon resonance
Scanning
Wavelength
scanning

Comparison of frequency and strain-rate domain mechanical characterization

Bartolini, L., Iannuzzi, D. & Mattei, G., 12 Sep 2018, In : Scientific Reports. 8, p. 1-11 11 p., 13697.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Strain rate
Indentation
Testing
Polydimethylsiloxane
Tissue

Comparison of multi-tensor diffusion models' performance for white matter integrity estimation in chronic stroke

on behalf of the 4D EEG Consortium, 23 Apr 2018, In : Frontiers in Neuroscience. 12, APR, 247.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Stroke
Pyramidal Tracts
Upper Extremity
Diffusion Magnetic Resonance Imaging
Atlases

Compressive imaging through a multimode fiber

Amitonova, L. V. & De Boer, J. F., 1 Nov 2018, In : Optics Letters. 43, 21, p. 5427-5430 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

fibers
microscopy
raster scanning
speckle patterns
probes

Diagnostic capability of three-dimensional macular parameters for glaucoma using optical coherence tomography volume scans

Vercellin, A. C. V., Jassim, F., Poon, L. Y. C., Tsikata, E., Braaf, B., Shah, S., Ben-David, G., Shieh, E., Lee, R., Simavli, H., Que, C. J., Papadogeorgou, G., Guo, R., Vakoc, B. J., Bouma, B. E., de Boer, J. F. & Chen, T. C., 1 Oct 2018, In : Investigative Ophthalmology and Visual Science. 59, 12, p. 4998-5010 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optical Coherence Tomography
Ganglia
Glaucoma
Cell Size
Nerve Fibers

Effects of age, race, and ethnicity on the optic nerve and peripapillary region using spectral-domain OCT 3d volume scans

Poon, L. Y. C., Antar, H., Tsikata, E., Guo, R., Papadogeorgou, G., Freeman, M., Khoueir, Z., Lee, R., Shieh, E., Simavli, H., Que, C. J., de Boer, J. F. & Chen, T. C., 1 Nov 2018, In : Translational Vision Science and Technology. 7, 6, p. 1-13 13 p., 12.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Optic Nerve
Nerve Fibers
Optics
Fibers
Optical tomography

Entomofauna van de Noord-Hollandse duinen: Verslag van de 171e NEV-zomerbijeenkomst

Franken, O. & Berg, M. P., Apr 2018, In : Entomologische Berichten. 78, 2, p. 42-69 28 p.

Research output: Contribution to JournalArticleProfessional

Open Access
File
maar
fauna
summer

Fast microplastics identification with stimulated Raman scattering microscopy

Zada, L., Leslie, H. A., Vethaak, A. D., Tinnevelt, G., Janssen, J., de Boer, J. F. & Ariese, F., Jul 2018, In : Journal of Raman Spectroscopy. 49, 7, p. 1136-1144 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Stimulated Raman scattering
Microscopic examination
Polymers
Plastics
Plastic products

Feasibility of using optical coherence tomography to detect acute radiation-induced esophageal damage in small animal models

Jelvehgaran, P., de Bruin, D. M., Salguero, F. J., Borst, G. R., Song, J-Y., van Leeuwen, T. G., de Boer, J. F., Alderliesten, T. & van Herk, M., 12 Apr 2018, In : Journal of Biomedical Optics. 23, 4, p. 1-12 12 p., 046004.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Feasibility of using optical coherence tomography to detect radiation-induced fibrosis and residual cancer extent after neoadjuvant chemo-radiation therapy: An ex vivo study

Jelvehgaran, P., Alderliesten, T., Georgiou, G., Meijer, S. L., Bloemen, P. R., Kodach, L. L., van Laarhoven, H. W. M., van Berge Henegouwen, M. I., Hulshof, M. C. C. M., Rasch, C. R. N., van Leeuwen, T. G., de Boer, J. F., de Bruin, M. & van Herk, M., 1 Sep 2018, In : Biomedical Optics Express. 9, 9, p. 4196-4216 21 p., #330772.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Radiation-Induced Neoplasms
Radiation Pneumonitis
fibrosis
Optical Coherence Tomography
Residual Neoplasm

Fourier conjugate adaptive optics for deep-tissue large field of view imaging

Amitonova, L. V., 20 Nov 2018, In : Applied Optics. 57, 33, p. 9803-9808 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Adaptive optics
adaptive optics
field of view
Tissue
Imaging techniques

High resolution combined molecular and structural optical imaging of colorectal cancer in a xenograft mouse model

Feroldi, F., Verlaan, M., Knaus, H., Davidoiu, V., Vugts, D. J., Van Dongen, G. A. M. S., Molthoff, C. F. M. & De Boer, J. F., 1 Dec 2018, In : Biomedical Optics Express. 9, 12, p. 6186-6204 19 p., #346860.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Optical Imaging
Heterografts
mice
Colorectal Neoplasms
tumors

Imaging linear and circular polarization features in leaves with complete Mueller matrix polarimetry

Patty, C. H. L., Luo, D. A., Snik, F., Ariese, F., Buma, W. J., ten Kate, I. L., van Spanning, R. J. M., Sparks, W. B., Germer, T. A., Garab, G. & Kudenov, M. W., Jun 2018, In : Biochimica et Biophysica Acta - General Subjects. 1862, 6, p. 1350-1363 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Circular polarization
Polarimeters
Veins
Acer
Imaging techniques

In vivo exploration of retinal nerve fiber layer morphology in Parkinson’s disease patients

Visser, F., Vermeer, K. A., Ghafaryasl, B., Vlaar, A. M. M., Apostolov, V., van Hellenberg Hubar, J., Weinstein, H. C., de Boer, J. F. & Berendse, H. W., 8 Mar 2018, In : Journal of Neural Transmission. 125, 6, p. 931-936 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Nerve Fibers
Parkinson Disease
Optical Coherence Tomography
Control Groups
Atrophy

In vivo retinal imaging for fixational eye motion detection using a high-speed digital micromirror device (DMD)-based ophthalmoscope

Vienola, K. V., Damodaran, M., Braaf, B., Vermeer, K. A. & de Boer, J. F., 1 Feb 2018, In : Biomedical Optics Express. 9, 2, p. 591-602 12 p., #313640.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Ophthalmoscopes
high speed
Equipment and Supplies
retina
Artifacts

Minimally Invasive Micro-Indentation: mapping tissue mechanics at the tip of an 18G needle (vol 7, 2017)

Beekmans, S. V., Emanuel, K. S., Smit, T. H. & Iannuzzi, D., 15 Mar 2018, In : Scientific Reports. 8, 4880.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

On-chip Mach-Zehnder interferometer for OCT systems

Van Leeuwen, T. G., Akca, I. B., Angelou, N., Weiss, N., Hoekman, M., Leinse, A. & Heideman, R. G., 25 Apr 2018, In : Advanced Optical Technologies. 7, 1-2, p. 103-106 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

File
Mach-Zehnder interferometers
Optical tomography
tomography
chips
Integrated optics