• De Boelelaan 1081 , W&N building

    1081 HV Amsterdam

    Netherlands

Research Output 1935 2020

2020

Aggregation induced emission of a new naphthyridine-ethynyl-gold(i) complex as a potential tool for sensing guanosine nucleotides in aqueous media

Moro, A. J., Avó, J., Malfois, M., Zaccaria, F., Fonseca Guerra, C., Caparrós, F. J., Rodríguez, L. & Lima, J. C., 7 Jan 2020, In : Dalton Transactions. 49, 1, p. 171-178 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Naphthyridines
Guanosine
Gold
Hydrogen bonds
Agglomeration

A gull's portrait: On individual foraging strategies and their fitness consequences

van Donk, S. C., 2020, 218 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

A modeling environment for reified temporal-causal network models

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Cham, Switzerland: Springer International Publishing AG, p. 211-224 14 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
Causal Model
Network Model
Engines
Engine
Network architecture

Analysis of a network’s emerging behaviour via its structure involving its strongly connected components

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Springer International Publishing AG, p. 281-318 38 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
Connected Components
Network Structure
Describing functions
Theorem
Linear Function

Analytics for bioactivity profiling of complex mixtures with a focus on venoms

Mladic, M., Niessen, W. M. A., Somsen, G. W. & Kool, J., 1 Jan 2020, Snake and spider toxins: methods and protocols. Humana Press Inc., p. 27-49 23 p. (Methods in Molecular Biology; vol. 2068).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Venoms
Drug Discovery
Complex Mixtures
Biological Products
Biological Assay

A new target for an old enemy: The Cytochrome P450 system from Mycobacterium tuberculosis

Ortega Ugalde, S., 2020, 202 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
eucrite
volatile element
Sulfides
accretion
sulfide

A reified network model for adaptive decision making based on the disconnect-reconnect adaptation principle

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Springer International Publishing AG, p. 123-142 20 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Network Model
Decision making
Decision Making
suppression
decision making

Astrocytes lost in translation: From novel Vanishing White Matter models to the first therapeutic strategies

Dooves, S., 2020, 222 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

A Temporal-Causal Modelling Approach to Analyse the Dynamics of Burnout and the Effects of Sleep

von Kentzinsky, H., Wijtsma, S. & Treur, J., 2020, Proceedings of the Fourth International Congress on Information and Communication Technology, ICICT'19., London. Yang, X-S., Sherratt, S., Dey, N. & Joshi, A. (eds.). Springer, Vol. 2. p. 219-232 14 p. (Advances in Intelligent Systems and Computing; vol. 1027).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
Recovery
Sleep

A Temporal Cognitive Model of The Influence of Methylphenidate (Ritalin) on Test Anxiety

Mohammadi Ziabari, S. S., Lelieveld, I. & Storre, G-J., 2020, Proceedings of the Fourth International Congress on Information and Communication Technology, ICICT'19, London. Yang, X-S., Sherratt, S., Dey, N. & Joshi, A. (eds.). Springer, Vol. 2. p. 331-345 15 p. (Advances in Intelligent Systems and Computing; vol. 1027).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Decision making
Students
Data storage equipment

A unified approach to represent network adaptation principles by network reification

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models . Treur, J. (ed.). Springer International Publishing AG, p. 59-98 40 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
reification
Agglomeration
Network Structure
Reification
Hebbian Learning

A Unified Experimental/Theoretical Description of the Ultrafast Photophysics of Single and Double Thionated Uracils

Teles-Ferreira, D. C., Conti, I., Borrego-Varillas, R., Nenov, A., Van Stokkum, I. H. M., Ganzer, L., Manzoni, C., de Paula, A. M., Cerullo, G. & Garavelli, M., 2 Jan 2020, In : Chemistry - A European Journal. 26, 1, p. 336-343 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Uracil
Absorption spectroscopy
Excited states
Absorption spectra
Sulfur

Bayesian mixture regression analysis for regulation of Pluripotency in ES cells

Aflakparast, M., Geeven, G. & De Gunst, M. C. M., 2 Jan 2020, In : BMC Bioinformatics. 21, p. 1-13 13 p., 3.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Regression Analysis
Regression analysis
Genes
Gene
Transcription Factors
Open Access
transdisciplinary
capacity building
time domain reflectometry
evaluation
evaluation research

Completeness of the description of manipulation and mobilisation techniques in randomized controlled trials in neck pain; A review using the TiDieR checklist

Pool, J., Maissan, F., de Waele, N., Wittink, H. & Ostelo, R., 1 Feb 2020, In : Musculoskeletal Science and Practice. 45, 102098.

Research output: Contribution to JournalReview articleAcademicpeer-review

Neck Pain
Checklist
Randomized Controlled Trials
Research Personnel
Clinical Trials

Confidence interval estimation for the changepoint of treatment stratification in the presence of a qualitative covariate-treatment interaction

Haller, B., Mansmann, U., Dobler, D., Ulm, K. & Hapfelmeier, A., 15 Jan 2020, In : Statistics in Medicine. 39, 1, p. 70-96 27 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Interval Estimation
Change Point
Stratification
Confidence interval
Covariates

Confuzz—a concurrency fuzzer

Vinesh, N., Rawat, S., Bos, H., Giuffrida, C. & Sethumadhavan, M., 1 Jan 2020, 1st International Conference on Sustainable Technologies for Computational Intelligence- Proceedings of ICTSCI 2019. Luhach, A. K., Kosa, J. A., Poonia, R. C., Gao, X-Z. & Singh, D. (eds.). Springer, p. 667-691 25 p. (Advances in Intelligent Systems and Computing; vol. 1045).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Static analysis
Data storage equipment
Uncertainty
biofuel
Biofuels
air traffic
nongovernmental organization
Aviation

Cortical Output Is Gated by Horizontally Projecting Neurons in the Deep Layers

Egger, R., Narayanan, R. T., Guest, J. M., Bast, A., Udvary, D., Messore, L. F., Das, S., de Kock, C. P. J. & Oberlaender, M., 8 Jan 2020, In : Neuron. 105, 1, p. 122-137.e8 24 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Neurons
Axons
Pyramidal Tracts
Pyramidal Cells
Neocortex
Open Access
File

Discovery of N-(4-Aminobutyl)-N'-(2-methoxyethyl)guanidine as the First Selective, Nonamino Acid, Catalytic Site Inhibitor of Human Dimethylarginine Dimethylaminohydrolase-1 (hDDAH-1)

Lunk, I., Litty, F-A., Hennig, S., Vetter, I. R., Kotthaus, J., Altmann, K. S., Ott, G., Havemeyer, A., Carillo García, C., Clement, B. & Schade, D., 9 Jan 2020, In : Journal of Medicinal Chemistry. 63, 1, p. 425-432 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Guanidine
Catalytic Domain
Amidines
Acids
Prodrugs

DNA, proteins, membranes: exploring the physics behind biomolecular processes

Marchetti, M., 2020, 195 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Economic valuation of green and blue nature in cities: A meta-analysis

Bockarjova, M., Botzen, W. J. W. & Koetse, M. J., 1 Mar 2020, In : Ecological Economics. 169, 106480.

Research output: Contribution to JournalArticleAcademicpeer-review

meta-analysis
transfer function
valuation
economics
ecosystem service

Ecotoxicological effects on Lemna minor and Daphnia magna of leachates from differently aged landfills of Ghana

Sackey, L. N. A., Kočí, V. & van Gestel, C. A. M., 1 Jan 2020, In : Science of the Total Environment. 698, 134295.

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical Water Pollutants
Land fill
leachate
Poisons
landfill

Experimental and theoretical modelling of kinetic and equilibrium Ba isotope fractionation during calcite and aragonite precipitation

Mavromatis, V., van Zuilen, K., Blanchard, M., van Zuilen, M., Dietzel, M. & Schott, J., 15 Jan 2020, In : Geochimica et Cosmochimica Acta. 269, p. 566-580 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Calcium Carbonate
aragonite
Fractionation
Isotopes
calcite

Exploring the impacts of plastics in soil – The effects of polyester textile fibers on soil invertebrates

Selonen, S., Dolar, A., Jemec Kokalj, A., Skalar, T., Parramon Dolcet, L., Hurley, R. & van Gestel, C. A. M., 15 Jan 2020, In : Science of the Total Environment. 700, p. 1-11 11 p., 134451.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Textile fibers
Polyesters
invertebrate
plastic
Plastics

Facilities that make the PDB data collection more powerful

Lange, J., Baakman, C., Pistorius, A., Krieger, E., Hooft, R., Joosten, R. P. & Vriend, G., 1 Jan 2020, In : Protein Science. 29, 1, p. 330-344 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Databases
Computational Biology
Proteins
Bioinformatics
Software

Fluid evolution and ore deposition in the Harz Mountains revisited: isotope and crush-leach analyses of fluid inclusions

de Graaf, S., Lüders, V., Banks, D. A., Sośnicka, M., Reijmer, J. J. G., Kaden, H. & Vonhof, H. B., 2020, In : Mineralium Deposita. 55, 1, p. 47-62 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

fluid inclusion
Zechstein
isotope
mountain
fluid flow

From COBOL to Business Rules—Extracting Business Rules from Legacy Code

Sneed, H. M. & Verhoef, C., 1 Jan 2020, Integrating research and practice in software engineering. Springer Verlag, p. 187-208 22 p. (Studies in Computational Intelligence; vol. 851).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Codes (standards)
Specifications
Reverse engineering
Industry
Railroad cars

Higher-order reified adaptive network models with a strange loop

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Springer International Publishing AG, p. 187-208 22 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
Network Model
Higher Order
Paradox
graphic arts
Music

Homotopy classes of proper maps out of vector bundles

Rot, T. O., 1 Jan 2020, In : Archiv der Mathematik. 114, 1, p. 107-117 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Proper Map
Vector Bundle
Homotopy
Noncompact Manifold
Compact Hausdorff Space

Identification of mutagenic and endocrine disrupting compounds in surface water and wastewater treatment plant effluents using high-resolution effect-directed analysis

Zwart, N., Jonker, W., Broek, R. T., de Boer, J., Somsen, G., Kool, J., Hamers, T., Houtman, C. J. & Lamoree, M. H., 1 Jan 2020, In : Water Research. 168, p. 1-9 9 p., 115204.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Water treatment
Surface waters
Wastewater treatment
Mutagens
Effluents

Illness perceptions associated with patient burden with musculoskeletal pain in outpatient physical therapy practice, a cross-sectional study

de Raaij, E. J., Ostelo, R. W. J. G., Maissan, J. F., Pool, J., Westers, P. & Wittink, H., 1 Feb 2020, In : Musculoskeletal Science and Practice. 45, 102072.

Research output: Contribution to JournalArticleAcademicpeer-review

Musculoskeletal Pain
Outpatients
Cross-Sectional Studies
Pain
Therapeutics

Impact of hydraulic sorting and weathering on mica provenance studies: An example from the Yangtze River

Sun, X., Kuiper, K. F., Tian, Y., Li, C., Gemignani, L., Zhang, Z. & Wijbrans, J. R., 20 Jan 2020, In : Chemical Geology. 532, p. 11-11 11 p., 119359.

Research output: Contribution to JournalArticleAcademicpeer-review

Weathering
Sorting
mica
sorting
provenance

Impacts of future climate and land use change on water yield in a semi‐arid basin in Iran

Shirmohammadi Chelan, B., Malekian, A., Salajegh, A., Taheri, B., Azarnivand, H., Malek, Z. & Verburg, P. H., 13 Jan 2020, In : Land Degradation & Development.

Research output: Contribution to JournalArticleAcademicpeer-review

water yield
Land use
land use change
Iran
land use

Increasing utilisation of perinatal services: Estimating the impact of community health worker program in Neno, Malawi

Kachimanga, C., Dunbar, E. L., Watson, S., Cundale, K., Makungwa, H., Wroe, E. B., Malindi, C., Nazimera, L., Palazuelos, D., Drake, J., Gates, T., Van Den Akker, T. & Shea, J., 6 Jan 2020, In : BMC Pregnancy and Childbirth. 20, 1, 22.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Malawi
Prenatal Care
Postnatal Care
Pregnant Women
Perinatal Care

Ins and outs of network-oriented modeling

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Springer International Publishing AG, p. 25-55 31 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Modeling
Network Model
Network Structure
Social Networks
Agglomeration

In situ spectroelectrochemical investigation of a biophotoelectrode based on photoreaction centers embedded in a redox hydrogel

Białek, R., Friebe, V., Ruff, A., Jones, M. R., Frese, R. & Gibasiewicz, K., 10 Jan 2020, In : Electrochimica Acta. 330, p. 1-7 7 p., 135190.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Hydrogel
Hydrogels
Osmium
Photosynthetic Reaction Center Complex Proteins
Proteins

Interpreting the MINT randomized clinical trials evaluating radiofrequency denervation for lumbar facet and sacroiliac joint pain: a reply to Provenzano et al

Maas, E. T., Juch, J. N. S., van Tulder, M. W. & Huygen, F. J. P. M., Jan 2020, In : Regional Anesthesia and Pain Medicine. 45, 1, p. 88-89 2 p.

Research output: Contribution to JournalLetterAcademicpeer-review

Large palaeomeanders in Europe: distribution, formation process, age, environments and significance.

Vandenberghe, J. & Sidorchuk, A., 2020, Palaeohydrology: Geography of the Physical Environment. Herget, J. & Fontana, A. (eds.). Springer_Verlag, p. 169-186 (Geography of the Physical Environment).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Letting off STEAM: Distributed Runtime Traffic Scheduling for Service Function Chaining

Blöcher, M., Khalili, R., Wang, L. & Eugster, P., 2020, (Accepted/In press) IEEE International Conference on Computer Communications: INFOCOM.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Likelihood ratio distributions and the (ir)relevance of error rates

Slooten, K., 1 Jan 2020, In : Forensic Science International: Genetics. 44, p. 1-6 6 p., 102173.

Research output: Contribution to JournalReview articleAcademicpeer-review

Open Access
Gene Frequency
Publications
Technology

Long-term exposure of activated sludge in chemostats leads to changes in microbial communities composition and enhanced biodegradation of 4-chloroaniline and N-methylpiperazine

Poursat, B. A. J., van Spanning, R. J. M., Braster, M., Helmus, R., de Voogt, P. & Parsons, J. R., 1 Mar 2020, In : Chemosphere. 242, 125102.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Chemostats
chemostat
Sewage
Biodegradation
community composition

Major obstetric haemorrhage in Metro East, Cape Town, South Africa: A population-based cohort study using the maternal near-miss approach

Heitkamp, A., Aronson, S. L., Van Den Akker, T., Vollmer, L., Gebhardt, S., Van Roosmalen, J., De Vries, J. I. & Theron, G., 6 Jan 2020, In : BMC Pregnancy and Childbirth. 20, 1, 14.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
South Africa
Obstetrics
Cohort Studies
Mothers
Hemorrhage

Mathematical details of specific difference and differential equations and mathematical analysis of emerging network behaviour

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Springer International Publishing AG, p. 375-403 29 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Difference equations
Mathematical Analysis
Difference equation
Differential equations
Differential equation

Meeting goals of sustainability policy: CO2 emission reduction, cost-effectiveness and societal acceptance. An analysis of the proposal to phase out coal in the Netherlands

Akerboom, S., Botzen, W., Buijze, A., Michels, A. & van Rijswick, M., 2020, (Accepted/In press) In : Energy Policy.

Research output: Contribution to JournalArticleAcademicpeer-review

Metal-silicate partitioning systematics of siderophile elements at reducing conditions: A new experimental database

Steenstra, E. S., Seegers, A. X., Putter, R., Berndt, J., Klemme, S., Matveev, S., Bullock, E. S. & van Westrenen, W., 1 Jan 2020, In : Icarus. 335, p. 1-28 28 p., 113391.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
siderophile elements
siderophile element
silicon
silicates
partitioning