Research Output per year
Fingerprint Dive into the research topics where Integrative Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Sequence Alignment
Medicine & Life Sciences
Proteins
Medicine & Life Sciences
Genes
Chemical Compounds
Alignment
Mathematics
Protein
Mathematics
Computational Biology
Medicine & Life Sciences
Gene Expression
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Profiles
dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
Juami van Gils, MSc
- Faculty of Science, Bioinformatics - PhD Candidate
- AIMMS - PhD Candidate
- Integrative Bioinformatics - PhD Candidate
Person: Academic
dr. Maryam Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
dr. R. Haydarlou
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
Research Output 2002 2019
A framework for exhaustive modelling of genetic interaction pattern using Petri nets
Jacobsen, A., Ivanova, O., Amini, S., Heringa, J., Kemmeren, P. & Feenstra, K. A., 17 Dec 2019, In : Bioinformatics.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Petri nets
Petri Nets
Genes
Phenotype
Biological Phenomena
Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using consdyn enhanced sampling [version 1; peer review: 1 approved with reservations, 1 not approved]
Mouhib, H., Higuchi, A., Abeln, S., Yura, K. & Feenstra, K. A., 22 Mar 2019, In : F1000Research. 8, p. 1-14 14 p., 322.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Peer Review
Facilitative Glucose Transport Proteins
Sampling
Mutation
Glucose Transporter Type 1
Reasoning about cell dynamics using network models
Jacobsen, A., 2019, 182 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions
Hou, Q., De Geest, P. F. G., Griffioen, C. J., Abeln, S., Heringa, J. & Feenstra, K. A., 1 Nov 2019, In : Bioinformatics. 35, 22, p. 4794-4796 3 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Web Server
Proteins
Protein
Prediction
Interaction
Single-Cell Data Analysis Using MMD Variational Autoencoder for a More Informative Latent Representation
Zhang, C., 2019, (In preparation).Research output: Working paper › Academic
computer vision
data analysis
Activities 2015 2017
- 8 Lecture / Presentation
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
Predicting side chain mobility from sequence by DynaMine
K.A. Feenstra (Speaker), Wim F. Vranken (Speaker)4 Feb 2015
Activity: Lecture / Presentation › Academic