Research Output per year
Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit
Proteins
Engineering & Materials Science
Sequence Alignment
Medicine & Life Sciences
Genes
Engineering & Materials Science
Alignment
Mathematics
Protein
Mathematics
Gene Expression
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Systems Biology
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Profiles
Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
K.A. Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
M. Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
R. Haydarlou
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
Huub Hoefsloot
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
Research Output 2002 2019
Reasoning about cell dynamics using network models
Jacobsen, A., 2019, 182 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern
Amini, S., Jacobsen, A., Ivanova, O., Lijnzaad, P., Heringa, J., Holstege, F. C. P., Feenstra, K. A. & Kemmeren, P., 13 May 2019, In : PLoS Computational Biology. 15, 5, p. e1007061Research output: Contribution to Journal › Article › Academic › peer-review
Transcription factors
Transcription Factor
Gene expression
Gene Expression
gene expression
Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer
Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A., 14 May 2018, In : Scientific Reports. 8, 1, p. 7522 7522.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes
Deep sequencing identifies hepatitis B virus core protein signatures in chronic hepatitis B patients
van der Ree, M. H., Jansen, L., Welkers, M. R. A., Reesink, H. W., Feenstra, K. A. & Kootstra, N. A., Oct 2018, In : Antiviral research. 158, p. 213-225 13 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Viral Core Proteins
High-Throughput Nucleotide Sequencing
Chronic Hepatitis B
Hepatitis B e Antigens
Hepatitis B virus
Motif-Aware PRALINE: Improving the alignment of motif regions: Improving the alignment of motif regions
Dijkstra, M., Bawono, P., Abeln, S., Feenstra, K. A., Fokkink, W. & Heringa, J., 1 Nov 2018, In : PLoS Computational Biology. 14, 11, p. 1-19 19 p., e1006547.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Sequence Alignment
sequence alignment
Alignment
Multiple Sequence Alignment
Benchmarking
Activities 2015 2017
- 8 Lecture / Presentation
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes
K.A. Feenstra (Speaker), L. Xue (Speaker)4 Nov 2015
Activity: Lecture / Presentation › Academic