Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit

Proteins Engineering & Materials Science
Sequence Alignment Medicine & Life Sciences
Alignment Mathematics
Genes Engineering & Materials Science
Protein Mathematics
Systems Biology Medicine & Life Sciences
Genome Medicine & Life Sciences
Sequencing Mathematics

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Profiles

No photo of M.J.J. Dijkstra

M.J.J. Dijkstra

Person: Academic

20152018
Photo of K.A. Feenstra

K.A. Feenstra

Person: Academic

19962018
Photo of Chao Zhang

Chao Zhang

Person: Academic

20162017

Research Output 2002 2018

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A., 14 May 2018, In : Scientific Reports. 8, 1, p. 7522 7522

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes

Deep sequencing identifies hepatitis B virus core protein signatures in chronic hepatitis B patients

van der Ree, M. H., Jansen, L., Welkers, M. R. A., Reesink, H. W., Feenstra, K. A. & Kootstra, N. A., Oct 2018, In : Antiviral research. 158, p. 213-225 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Viral Core Proteins
High-Throughput Nucleotide Sequencing
Chronic Hepatitis B
Hepatitis B e Antigens
Hepatitis B virus

Motif-Aware PRALINE: Improving the alignment of motif regions

Dijkstra, M., Bawono, P., Abeln, S., Feenstra, K. A., Fokkink, W. & Heringa, J., 1 Nov 2018, In : PLoS Computational Biology. 14, 11, p. e1006547

Research output: Contribution to JournalArticleAcademicpeer-review

Sequence Alignment
sequence alignment
Alignment
Multiple Sequence Alignment
Benchmarking

Preface to Introduction to Structural Bioinformatics

Feenstra, K. A. & Abeln, S., 29 Jan 2018, Introduction to Structural Bioinformatics.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

File

The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein

Dijkstra, M. J. J., Fokkink, W. J., Heringa, J., van Dijk, E. & Abeln, S., 13 Jul 2018, (Accepted/In press) In : Molecular Physics. p. 1-8 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

globules
folding
Molten materials
Hot Temperature
proteins

Activities 2015 2017

  • 8 Lecture / Presentation

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

Feenstra, K. A. (Speaker), Heringa, J. (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

Feenstra, K. A. (Speaker), Heringa, J. (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: Lecture / PresentationAcademic

Advances in single molecule sequencing and applications

Feenstra, K. A. (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: Lecture / PresentationAcademic

Hybrid integration approach refines cancer typing and subtyping by incorporating four genome-wide omics platforms

Feenstra, K. A. (Speaker), E. Taskesen (Speaker)
2 Sep 2015

Activity: Lecture / PresentationAcademic

Prizes

NWO Veni

S. Abeln (Recipient), 2011

Prize: Prize / AwardAcademic