Research Output per year
Fingerprint The fingerprint is based on mining the text of the scientific documents related to the associated persons. Based on that an index of weighted terms is created, which defines the key subjects of research unit
Proteins
Engineering & Materials Science
Sequence Alignment
Medicine & Life Sciences
Alignment
Mathematics
Genes
Engineering & Materials Science
Protein
Mathematics
Systems Biology
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Sequencing
Mathematics
Network
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Profiles
M.J.J. Dijkstra
- Faculty of Science, Bioinformatics - Standard PhD Candidate
- AIMMS - Standard PhD Candidate
- Network Institute - Standard PhD Candidate
- Theoretical Computer Science - Standard PhD Candidate
- Integrative Bioinformatics - Standard PhD Candidate
Person: Academic
K.A. Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
Bas Stringer
- Faculty of Science, Bioinformatics - Lecturer
- AIMMS - Lecturer
- Integrative Bioinformatics - Lecturer
Person: Academic
Chao Zhang
- Faculty of Science, Bioinformatics - Standard PhD Candidate
- AIMMS - Standard PhD Candidate
- Integrative Bioinformatics - Standard PhD Candidate
Person: Academic
Research Output 2002 2018
Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer
Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A., 14 May 2018, In : Scientific Reports. 8, 1, p. 7522 7522Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes
Deep sequencing identifies hepatitis B virus core protein signatures in chronic hepatitis B patients
van der Ree, M. H., Jansen, L., Welkers, M. R. A., Reesink, H. W., Feenstra, K. A. & Kootstra, N. A., Oct 2018, In : Antiviral research. 158, p. 213-225 13 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Viral Core Proteins
High-Throughput Nucleotide Sequencing
Chronic Hepatitis B
Hepatitis B e Antigens
Hepatitis B virus
Motif-Aware PRALINE: Improving the alignment of motif regions
Dijkstra, M., Bawono, P., Abeln, S., Feenstra, K. A., Fokkink, W. & Heringa, J., 1 Nov 2018, In : PLoS Computational Biology. 14, 11, p. e1006547Research output: Contribution to Journal › Article › Academic › peer-review
Sequence Alignment
sequence alignment
Alignment
Multiple Sequence Alignment
Benchmarking
Preface to Introduction to Structural Bioinformatics
Feenstra, K. A. & Abeln, S., 29 Jan 2018, Introduction to Structural Bioinformatics.Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic
File
The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein
Dijkstra, M. J. J., Fokkink, W. J., Heringa, J., van Dijk, E. & Abeln, S., 13 Jul 2018, (Accepted/In press) In : Molecular Physics. p. 1-8 8 p.Research output: Contribution to Journal › Article › Academic › peer-review
globules
folding
Molten materials
Hot Temperature
proteins
Activities 2015 2017
- 8 Lecture / Presentation
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
Feenstra, K. A. (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
Feenstra, K. A. (Speaker), Heringa, J. (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
Feenstra, K. A. (Speaker), Heringa, J. (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
Feenstra, K. A. (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
Hybrid integration approach refines cancer typing and subtyping by incorporating four genome-wide omics platforms
Feenstra, K. A. (Speaker), E. Taskesen (Speaker)2 Sep 2015
Activity: Lecture / Presentation › Academic