Fingerprint Dive into the research topics where Integrative Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.

Proteins Engineering & Materials Science
Sequence Alignment Medicine & Life Sciences
Genes Engineering & Materials Science
Protein Mathematics
Alignment Mathematics
Gene Expression Medicine & Life Sciences
Genome Medicine & Life Sciences
Systems Biology Medicine & Life Sciences

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Profiles

Photo of Sanne Abeln

Sanne Abeln

Person: Academic

20052019
Photo of K.A. Feenstra

K.A. Feenstra

Person: Academic

19962019
No photo of M. Hashemi Shabestari

M. Hashemi Shabestari

Person: Academic

20122018
Photo of R. Haydarlou

R. Haydarlou

Person: Academic

20112016
No photo of Huub Hoefsloot

Huub Hoefsloot

Person: Academic

Research Output 2002 2019

Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using ConsDYN enhanced sampling

Mouhib, H., Higuchi, A., Abeln, S., Yura, K. & Feenstra, K. A., 22 Mar 2019, In : F1000Research. 8, p. 322

Research output: Contribution to JournalArticleAcademic

Facilitative Glucose Transport Proteins
Sampling
Mutation
Glucose Transporter Type 1
Molecular dynamics

Reasoning about cell dynamics using network models

Jacobsen, A., 2019, 182 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

SeRenDIP: SEquential REmasteriNg to DerIve Profiles for fast and accurate predictions of PPI interface positions

Hou, Q., De Geest, P., Griffioen, C. J., Abeln, S., Heringa, J. & Feenstra, K. A., 22 May 2019, In : Bioinformatics.

Research output: Contribution to JournalArticleAcademicpeer-review

Web Server
Proteins
Protein
Prediction
Interaction

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

Amini, S., Jacobsen, A., Ivanova, O., Lijnzaad, P., Heringa, J., Holstege, F. C. P., Feenstra, K. A. & Kemmeren, P., 13 May 2019, In : PLoS Computational Biology. 15, 5, p. 1-27 27 p., e1007061.

Research output: Contribution to JournalArticleAcademicpeer-review

Transcription factors
Transcription Factor
Gene expression
Gene Expression
gene expression

The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth

Dijk, E. V., Gils, J. H. M. V., Peduzzo, A., Hofmann, A., Groth, G., Mouhib, H., Otzen, D. E., Buell, A. K. & Abeln, S., 13 Jun 2019, In : arXiv.org.

Research output: Contribution to JournalArticleAcademic

thermodynamics
protein
heat capacity
meta-analysis
hydrophobicity

Activities 2015 2017

  • 8 Lecture / Presentation

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: Lecture / PresentationAcademic

Advances in single molecule sequencing and applications

K.A. Feenstra (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting favorable interactions amongst available candidates: A coarse-grained simulation approach to scoring docking decoys.

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
8 Dec 2015

Activity: Lecture / PresentationAcademic

Prizes

NWO Veni

Sanne Abeln (Recipient), 2011

PrizeAcademic