Research Output per year
Fingerprint Dive into the research topics where Integrative Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Proteins
Engineering & Materials Science
Sequence Alignment
Medicine & Life Sciences
Genes
Engineering & Materials Science
Protein
Mathematics
Alignment
Mathematics
Gene Expression
Medicine & Life Sciences
Genome
Medicine & Life Sciences
Systems Biology
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Profiles
Sanne Abeln
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
K.A. Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
M. Hashemi Shabestari
- Faculty of Science, Bioinformatics - Research Associate
- AIMMS - Research Associate
- Integrative Bioinformatics - Research Associate
- LaserLaB - Molecular Biophysics - Research Associate
Person: Academic
R. Haydarlou
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
Huub Hoefsloot
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
Research Output 2002 2019
Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using ConsDYN enhanced sampling
Mouhib, H., Higuchi, A., Abeln, S., Yura, K. & Feenstra, K. A., 22 Mar 2019, In : F1000Research. 8, p. 322Research output: Contribution to Journal › Article › Academic
Facilitative Glucose Transport Proteins
Sampling
Mutation
Glucose Transporter Type 1
Molecular dynamics
Reasoning about cell dynamics using network models
Jacobsen, A., 2019, 182 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
SeRenDIP: SEquential REmasteriNg to DerIve Profiles for fast and accurate predictions of PPI interface positions
Hou, Q., De Geest, P., Griffioen, C. J., Abeln, S., Heringa, J. & Feenstra, K. A., 22 May 2019, In : Bioinformatics.Research output: Contribution to Journal › Article › Academic › peer-review
Web Server
Proteins
Protein
Prediction
Interaction
The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern
Amini, S., Jacobsen, A., Ivanova, O., Lijnzaad, P., Heringa, J., Holstege, F. C. P., Feenstra, K. A. & Kemmeren, P., 13 May 2019, In : PLoS Computational Biology. 15, 5, p. 1-27 27 p., e1007061.Research output: Contribution to Journal › Article › Academic › peer-review
Transcription factors
Transcription Factor
Gene expression
Gene Expression
gene expression
The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
Dijk, E. V., Gils, J. H. M. V., Peduzzo, A., Hofmann, A., Groth, G., Mouhib, H., Otzen, D. E., Buell, A. K. & Abeln, S., 13 Jun 2019, In : arXiv.org.Research output: Contribution to Journal › Article › Academic
thermodynamics
protein
heat capacity
meta-analysis
hydrophobicity
Activities 2015 2017
- 8 Lecture / Presentation
Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker), M.A. Huynen (Speaker)23 Feb 2017
Activity: Lecture / Presentation › Academic
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)5 Apr 2017
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)19 Apr 2016
Activity: Lecture / Presentation › Academic
Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker), W. Pirovano (Speaker)24 Aug 2016
Activity: Lecture / Presentation › Academic
CLUB-MARTINI: Selecting favorable interactions amongst available candidates: A coarse-grained simulation approach to scoring docking decoys.
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)8 Dec 2015
Activity: Lecture / Presentation › Academic