Projects per year
Fingerprint
Dive into the research topics where Integrative Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Assistant Professor
- AIMMS - Assistant Professor
- Integrative Bioinformatics - Assistant Professor
Person: Academic
Projects
- 1 Finished
Research output
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Clusters of co-abundant proteins in the brain cortex associated with fronto-temporal lobar degeneration
Bridel, C., van Gils, J. H. M., Miedema, S. S. M., Hoozemans, J. J. M., Pijnenburg, Y. A. L., Smit, A. B., Rozemuller, A. J. M., Abeln, S. & Teunissen, C. E., 23 Mar 2023, In: Alzheimer's Research and Therapy. 15, p. 1-18 18 p., 59.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Computational Prediction Approaches for Predicting Mutation Impact on Protein-Protein Interactions
Ping, Y., Hoekstra, L. & Feenstra, A., 2023, Tenth International Conference on Applications and Techniques in Cyber Intelligence (ICATCI 2022): Volume 2. Abawajy, J. H., Xu, Z., Atiquzzaman, M. & Zhang, X. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 2. p. 401-409 9 p. (Lecture Notes on Data Engineering and Communications Technologies; vol. 169).Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic › peer-review
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Data Resources for Structural Bioinformatics
Gavaldá-Garciá, J., Stringer, B., Ivanova, O., Abeln, S., Feenstra, K. A. & Mouhib, H., 5 Jul 2023.Research output: Working paper / Preprint › Preprint › Academic
Open AccessFile11 Downloads (Pure) -
Function Prediction
Stringer, B., Jacobsen, A., Hou, Q., Ferrante, H. D., Ivanova, O., Waury, K., Gavaldá-Garciá, J., Abeln, S. & Feenstra, K. A., 5 Jul 2023.Research output: Working paper / Preprint › Preprint › Academic
Open AccessFile4 Downloads (Pure) -
Introduction to Protein Folding
Gils, J. H. M. V., Dijk, E. V., May, A., Mouhib, H., Bijlard, J., Jacobsen, A., Houtkamp, I., Feenstra, K. A. & Abeln, S., 5 Jul 2023.Research output: Working paper / Preprint › Preprint › Academic
Open AccessFile25 Downloads (Pure)
Courses
Activities
- 8 Lecture / Presentation
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes
K.A. Feenstra (Speaker) & L. Xue (Speaker)
4 Nov 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Dataset for the tutorial "pinpoint key pathways with Heinz"
Zhang, C. (Creator) & Abeln, S. (Creator), Zenodo, 2018
DOI: 10.5281/zenodo.1344105, https://zenodo.org/record/1344105
Dataset
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Additional file 3 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582074.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582074/1
Dataset
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Additional file 3 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582074, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582074
Dataset
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The MIDI Linked Data Cloud dataset
Meroño-Peñuela, A. (Contributor), Hoekstra, R. (Contributor), Gangemi, A. (Contributor), Bloem, P. (Contributor), Stringer, B. (Contributor), Janssen, B. (Contributor), de Boer, V. (Contributor), Allik, A. (Contributor) & de Valk, R. (Contributor), Zenodo, 2017
DOI: 10.5281/zenodo.579603, https://zenodo.org/record/579603
Dataset
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Additional file 4 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582077.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582077/1
Dataset