Projects per year
Fingerprint
Dive into the research topics where Integrative Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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dr. Sanne Abeln
- Faculty of Science, Bioinformatics - Visiting Fellow
- AIMMS - Visiting Fellow
- Integrative Bioinformatics - Visiting Fellow
Person: Academic
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dr. ir. Anton Feenstra
- Faculty of Science, Bioinformatics - Associate Professor
- AIMMS - Associate Professor
- Integrative Bioinformatics - Associate Professor
Person: Academic
Projects
- 1 Finished
Research output
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CIBRA identifies genomic alterations with a system-wide impact on tumor biology
Lakbir, S., Buranelli, C., Meijer, G. A., Heringa, J., Fijneman, R. J. A. & Abeln, S., Sept 2024, In: Bioinformatics. 40, Supplement_2, p. ii37-ii44 8 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
A Gut Feeling: Biomedical Knowledge Graphs for Interrelating the Gut Microbiome and Mental Health
Liu, T., 6 May 2024, 201 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile381 Downloads (Pure) -
Protein aggregation, hydrophobicity and neurodegenerative disease
van Gils, J. H. M., 17 Jan 2024, 202 p.Research output: PhD Thesis › PhD-Thesis - Research and graduation internal
Open AccessFile236 Downloads (Pure) -
Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph
Liu, T., Feenstra, K. A., Huang, Z. & Heringa, J., Jan 2024, In: Bioinformatics (Oxford, England). 40, 1, p. 1-9 9 p., btad771.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Methods to Discover and Validate Biofluid-Based Biomarkers in Neurodegenerative Dementias
MIRIADE consortium, Oct 2023, In: MCP : Molecular & cellular proteomics. 22, 10, p. 100629 100629.Research output: Contribution to Journal › Article › Academic › peer-review
Courses
Activities
- 8 Lecture / Presentation
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Mitochondrial medicine avant la lettre, how the nuclear genome plays catchup to the process of mitochondrial genome degradation
K.A. Feenstra (Speaker) & M.A. Huynen (Speaker)
23 Feb 2017Activity: Lecture / Presentation › Academic
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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Wim F. Vranken (Speaker)
5 Apr 2017Activity: Lecture / Presentation › Academic
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Advances in single molecule sequencing and applications
K.A. Feenstra (Speaker) & W. Pirovano (Speaker)
24 Aug 2016Activity: Lecture / Presentation › Academic
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CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys
K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker) & Marc F Lensink (Speaker)
19 Apr 2016Activity: Lecture / Presentation › Academic
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Partner-Specific Interface Prediction in Modeling 3D Biomolecular Complexes
K.A. Feenstra (Speaker) & L. Xue (Speaker)
4 Nov 2015Activity: Lecture / Presentation › Academic
Prizes
Datasets
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Additional file 4 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582077, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582077
Dataset
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Additional file 5 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582080.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582080/1
Dataset
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Additional file 2 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582071, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582071
Dataset
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Additional file 2 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582071.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582071/1
Dataset
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Additional file 3 of INFLECT: an R-package for cytometry cluster evaluation using marker modality
Verhoeff, J. (Creator), Abeln, S. (Creator) & Garcia-Vallejo, J. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.21582074.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_INFLECT_an_R-package_for_cytometry_cluster_evaluation_using_marker_modality/21582074/1
Dataset