Fingerprint Dive into the research topics where Integrative Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.

Sequence Alignment Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genes Chemical Compounds
Alignment Mathematics
Protein Mathematics
Computational Biology Medicine & Life Sciences
Gene Expression Medicine & Life Sciences
Genome Medicine & Life Sciences

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Profiles

Photo of Sanne Abeln

dr. Sanne Abeln

Person: Academic

20052019
Photo of Anton Feenstra

dr. ir. Anton Feenstra

Person: Academic

19962019
No photo of Juami Gils, van
No photo of Maryam Hashemi Shabestari

dr. Maryam Hashemi Shabestari

Person: Academic

20122018
Photo of R. Haydarlou

dr. R. Haydarlou

Person: Academic

19952016

Research Output 2002 2019

A framework for exhaustive modelling of genetic interaction pattern using Petri nets

Jacobsen, A., Ivanova, O., Amini, S., Heringa, J., Kemmeren, P. & Feenstra, K. A., 17 Dec 2019, In : Bioinformatics.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Petri nets
Petri Nets
Genes
Phenotype
Biological Phenomena

Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using consdyn enhanced sampling [version 1; peer review: 1 approved with reservations, 1 not approved]

Mouhib, H., Higuchi, A., Abeln, S., Yura, K. & Feenstra, K. A., 22 Mar 2019, In : F1000Research. 8, p. 1-14 14 p., 322.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Peer Review
Facilitative Glucose Transport Proteins
Sampling
Mutation
Glucose Transporter Type 1

Reasoning about cell dynamics using network models

Jacobsen, A., 2019, 182 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions

Hou, Q., De Geest, P. F. G., Griffioen, C. J., Abeln, S., Heringa, J. & Feenstra, K. A., 1 Nov 2019, In : Bioinformatics. 35, 22, p. 4794-4796 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Web Server
Proteins
Protein
Prediction
Interaction
computer vision
data analysis

Activities 2015 2017

  • 8 Lecture / Presentation

Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Wim F. Vranken (Speaker)
5 Apr 2017

Activity: Lecture / PresentationAcademic

CLUB-MARTINI: Selecting Favorable Interactions amongst Available Candidates, a Coarse-Grained Simulation approach to Scoring Docking Decoys

K.A. Feenstra (Speaker), Jaap Heringa (Speaker), Q. Hou (Speaker), Marc F Lensink (Speaker)
19 Apr 2016

Activity: Lecture / PresentationAcademic

Advances in single molecule sequencing and applications

K.A. Feenstra (Speaker), W. Pirovano (Speaker)
24 Aug 2016

Activity: Lecture / PresentationAcademic

Predicting side chain mobility from sequence by DynaMine

K.A. Feenstra (Speaker), Wim F. Vranken (Speaker)
4 Feb 2015

Activity: Lecture / PresentationAcademic

Prizes

NWO Veni

Sanne Abeln (Recipient), 2011

PrizeAcademic