Research Output 2002 2019

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Conference contribution
2015

Explaining disease using big data: How valid is your pathway?

Stringer, B., Dijkstra, M., Feenstra, A., Abeln, S. & Heringa, J., 2 Sep 2015, Proceedings of the 2015 International Conference on High Performance Computing and Simulation, HPCS 2015. Institute of Electrical and Electronics Engineers, Inc., p. 662-664 3 p. 7237114

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Life sciences
Pathway
Health
Valid
Sector

Genome sequence analysis with MonetDB: a case study on Ebola virus diversity

Klau, G. W., Cijvat, R., Manegold, S., Kersten, M., Schönhuth, A., Marschall, T. & Zhang, Y., 2015, Workshop on Data Management for Life Sciences at BTW 2015. Hamburg, Germany: Gesellschaft für Informatik (GI)

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2014

Petri nets are a biologist's best friend

Bonzanni, N., Feenstra, K. A., Fokkink, W. J. & Heringa, J., 2014, Formal Methods in Macro-Biology: First International Conference, FMMB 2014, Nouméa, New Caledonia, September 22-24, 2014. Proceedings. Springer/Verlag, p. 102-116 15 p. (Lecture Notes in Computer Science; vol. 8738)( Lecture Notes in Bioinformatics book sub series (LNBI); vol. 8738).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

File
Concurrency
Petri nets
Petri Nets
Cell Differentiation
Stem Cells
2013

Building Exceutable Biological Pathway Models Automatically from BioPAX

Willemsen, T., Feenstra, K. A. & Groth, P. T., 2013, 3rd International Workshop on Linked Science 2013—Supporting Reproducibility, Scientific Investigations and Experiments (LISC2013). Sydney

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Reconstructing consensus Bayesian network structures with application to learning molecular interaction networks

Fröhlich, H. & Klau, G. W., 2013, German Conference on Bioinformatics. Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, p. 46-55

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

Molecular interactions
Bayesian networks
Cutoff frequency
Linear programming
Availability
2011

Lagrangian Relaxation Applied to Sparse Global Network Alignment

El-Kebir, M., Heringa, J. & Klau, G. W., 2011, Pattern Recognition in Bioinformatics: 6th IAPR International Conference on PRIB 2011, Delft, The Netherlands, November 2-4, 2011, Proceedings. Loog, M., Wessels, L., Reinders, M. J. T. & de Ridder, D. (eds.). Berlin: Springer, p. 225-236 12 p. (Lecture Notes in Computer Science; vol. 7036).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Topology
Molecular interactions
Electric network analysis
Linear programming
Proteins