Research Output per year
Research Output 1999 2019
- 1 - 50 out of 355 results
- Publication Year, Title (descending)
2019
Adaptive, locally linear models of complex dynamics
Costa, A. C., Ahamed, T. & Stephens, G. J., 29 Jan 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 5, p. 1501-1510 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Caenorhabditis elegans
Linear Models
Space Simulation
Visual Cortex
Posture
Inhibition of autotransporter biogenesis by small molecules
Steenhuis, M., Abdallah, A. M., de Munnik, S. M., Kuhne, S., Sterk, G. J., van den Berg van Saparoea, B., Westerhausen, S., Wagner, S., van der Wel, N. N., Wijtmans, M., van Ulsen, P., Jong, W. S. P. & Luirink, J., 1 Jul 2019, In : Molecular Microbiology. 112, 1, p. 81-98 18 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Membrane Proteins
Virulence Factors
Libraries
Hemoglobins
Peptide Hydrolases
Isoniazid bactericidal activity involves electron transport chain perturbation
Zeng, S., Soetaert, K., Ravon, F., Vandeput, M., Bald, D., Kauffmann, J. M., Mathys, V., Wattiez, R. & Fontaine, V., 1 Mar 2019, In : Antimicrobial Agents and Chemotherapy. e01841-18.Research output: Contribution to Journal › Article › Academic › peer-review
Isoniazid
Electron Transport
Adenosine Triphosphate
Electron Transport Complex IV
NADH Dehydrogenase
Maturation of adenovirus primes the protein nano-shell for successful endosomal escape
Denning, D., Bennett, S., Mullen, T., Moyer, C., Vorselen, D., Wuite, G. J. L., Nemerow, G. & Roos, W. H., 7 Mar 2019, In : Nanoscale. 11, 9, p. 3799-3803 5 p.Research output: Contribution to Journal › Article › Academic › peer-review
DNA
Genes
Fatigue of materials
Proteins
Medical nanotechnology
Origin of Slow Stress Relaxation in the Cytoskeleton
Mulla, Y., Mackintosh, F. C. & Koenderink, G. H., 29 May 2019, In : Physical Review Letters. 122, 21, 218102.Research output: Contribution to Journal › Article › Academic › peer-review
biopolymers
stress relaxation
rheology
residual stress
nonlinearity
Single-molecule polarization microscopy of DNA intercalators sheds light on the structure of S-DNA
Backer, A. S., Biebricher, A. S., King, G. A., Wuite, G. J. L., Heller, I. & Peterman, E. J. G., 22 Mar 2019, In : Science advances. 5, 3, p. 1-11 11 p., eaav1083.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
deoxyribonucleic acid
microscopy
polarization
molecules
biotechnology
The Cell: Strong, Soft Matter
Mulla, Y., 2019, 152 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
2018
A brief introduction to single-molecule fluorescence methods
van den Wildenberg, S. M. J. L., Prevo, B. & Peterman, E. J. G., 2018, Single Molecule Analysis: Methods and Protocols. Humana Press Inc, p. 93-113 21 p. (Methods in Molecular Biology; vol. 1665).Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic
Fluorescence Microscopy
Fluorescence
Fluorescence Polarization
Biological Science Disciplines
Energy Transfer
Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms
Shabestari, M. H., King, G. A., Taris, K-K. H., Pandey, A. K., Venkatesh, S., Thilagavathi, J., Singh, K., Koppisetti, R. K., Temiakov, D., Roos, W. H., Suzuki, C. K. & Wuite, G. J. L., 20 Apr 2018, In : Nucleic Acids Research. 46, 7, p. 3633-3642Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Acoustic Force Spectroscopy (AFS): From single molecules to single cells
Kamsma, D., 2018, 188 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Adaptive, locally-linear models of complex dynamics (preprint)
Costa, A. C., Ahamed, T. & Stephens, G. J., 25 Jul 2018, In : arXiv preprint arXiv:1501.03933.Research output: Contribution to Journal › Article › Academic
File
brain
posture
eigenvalue
bifurcation
nematode
Adaptive optics via self-interference digital holography for non-scanning three-dimensional imaging in biological samples
Man, T., Wan, Y., Yan, W., Wang, X. H., Peterman, E. J. G. & Wang, D., 1 Jun 2018, In : Biomedical Optics Express. 9, 6, p. 2614-2626 13 p., #326210.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Holography
Three-Dimensional Imaging
adaptive optics
holography
aberration
A polarized view on DNA under tension
Van Mameren, J., Vermeulen, K., Wuite, G. J. L. & Peterman, E. J. G., 28 Mar 2018, In : Journal of Chemical Physics. 148, 12, 123306.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
deoxyribonucleic acid
DNA
Coloring Agents
dyes
Fluorescence microscopy
A single point mutation in precursor protein VI doubles the mechanical strength of human adenovirus
van Rosmalen, M. G. M., Nemerow, G. R., Wuite, G. J. L. & Roos, W. H., Jun 2018, In : Journal of Biological Physics. 44, 2, p. 119-132 14 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
adenoviruses
Human Adenoviruses
Protein Precursors
Capsid
mutations
Atomic force microscopy-based mechanobiology
Krieg, M., Fläschner, G., Alsteens, D., Gaub, B. M., Roos, W. H., Wuite, G. J. L., Gaub, H. E., Gerber, C., Dufrêne, Y. F. & Müller, D. J., 1 Nov 2018, In : Nature Reviews Physics. 1, January, p. 41-57 17 p.Research output: Contribution to Journal › Article › Academic › peer-review
biophysics
atomic force microscopy
mechanical properties
microscopy
fluorescence emission spectroscopy
Comparing autotransporter β-domain configurations for their capacity to secrete heterologous proteins to the cell surface
Jong, W. S. P., Schillemans, M., ten Hagen-Jongman, C. M., Luirink, J. & van Ulsen, P., 7 Feb 2018, In : PLoS ONE. 13, 2, e0191622.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
IgA-specific serine endopeptidase
recombinant proteins
Membrane Proteins
Recombinant Proteins
Membranes
Controlled Disturbance of Intraflagellar Transport in C. elegans Chemosensory Cilia Results in Changes of Ciliary Structure
Jona, M., Oswald, F., Girard, J., van Loo, J. & Peterman, E. J. G., 2 Feb 2018, In : Biophysical Journal. 114, 3, p. 655A-656AResearch output: Contribution to Journal › Meeting Abstract › Academic
Direct Observation and Quantification of Protein Dynamics on Negatively-Supercoiled DNA
King, G. A., Burla, F., Peterman, E. J. G. & Wuite, G. J. L., 2 Feb 2018, In : Biophysical Journal. 114, 3, p. 168A-168AResearch output: Contribution to Journal › Meeting Abstract › Academic
Display of recombinant proteins on bacterial outer membrane vesicles by using protein ligation
van den Berg van Saparoea, H. B., Houben, D., de Jonge, M. I., Jong, W. S. P. & Luirink, J., Apr 2018, In : Applied and Environmental Microbiology. 84, 8, p. 1-17 17 p., e02567-17.Research output: Contribution to Journal › Article › Academic › peer-review
hemoglobin
vesicle
Recombinant Proteins
recombinant proteins
Ligation
Effect of dsDNA on the Assembly Pathway and Mechanical Strength of SV40 VP1 Virus-like Particles
van Rosmalen, M. G. M., Li, C., Zlotnick, A., Wuite, G. J. L. & Roos, W. H., 6 Nov 2018, In : Biophysical Journal. 115, 9, p. 1656-1665 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Simian virus 40
Virion
DNA Viruses
DNA
Buffers
Ensemble and single-molecule dynamics of intraflagellar transport in C. elegans
Mijalkovic, J., 2018, 182 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Exposing Chromosome Architecture and Mechanics Using Optical Manipulation and Fluorescence Microscopy
Meijering, A. E. C., Sarlos, K., Bizard, A. H., Acar, S., Venegas, A. B., Bhowmick, R., Liu, Y., Heller, I., Hickson, I., Peterman, E. J. G. & Wuite, G. J. L., 2 Feb 2018, In : Biophysical Journal. 114, 3, p. 446A-446AResearch output: Contribution to Journal › Meeting Abstract › Academic
Fibrin structure and mechanics: A journey across scales
Vos, B. E., 2018, 218 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Hyperstretching DNA
Schakenraad, K., Biebricher, A. S., Sebregts, M., ten Bensel, B., Peterman, E. J. G., Wuite, G. J. L., Storm, C., van der Schoot, P. & Heller, I., 2 Feb 2018, In : Biophysical Journal. 114, 3, p. 90A-90AResearch output: Contribution to Journal › Meeting Abstract › Academic
Imaging the structure and the movement of the retina with scanning light ophthalmoscopy
Vienola, K. V., 2018, 117 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Immunization with Skp delivered on outer membrane vesicles protects mice against enterotoxigenic Escherichia coli CHALLENGE
Hays, M. P., Houben, D., Yang, Y., Luirink, J. & Hardwidge, P. R., 1 May 2018, In : Frontiers in Cellular and Infection Microbiology. 8, MAY, 132.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Enterotoxigenic Escherichia coli
Immunization
Glutathione Transferase
Membranes
Antigens
Interplay between Ciliary Ultrastructure and IFT-Train Dynamics Revealed by Single-Molecule Super-resolution Imaging
Oswald, F., Prevo, B., Acar, S. & Peterman, E. J. G., 2 Oct 2018, In : Cell Reports. 25, 1, p. 224-235 12 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Cilia
Axoneme
Imaging techniques
Molecules
Wild Animals
In vivo retinal imaging for fixational eye motion detection using a high-speed digital micromirror device (DMD)-based ophthalmoscope
Vienola, K. V., Damodaran, M., Braaf, B., Vermeer, K. A. & de Boer, J. F., 1 Feb 2018, In : Biomedical Optics Express. 9, 2, p. 591-602 12 p., #313640.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Ophthalmoscopes
high speed
Equipment and Supplies
retina
Artifacts
Ionophoric effects of the antitubercular drug bedaquiline
Hards, K., McMillan, D. G. G., Schurig-Briccio, L. A., Gennis, R. B., Lill, H., Bald, D. & Cook, G. M., 10 Jul 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 28, p. 7326-7331 6 p.Research output: Contribution to Journal › Article › Academic › peer-review
File
bedaquiline
Antitubercular Agents
Adenosine Triphosphate
Escherichia coli
Proton-Motive Force
Kinesin motor stepping challenged: The impact of traffic jams and temperature
Kushwaha, V. S., 2018, 140 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Multilamellar nanovesicles show distinct mechanical properties depending on their degree of lamellarity
Vorselen, D., Marchetti, M., López-Iglesias, C., Peters, P. J., Roos, W. H. & Wuite, G. J. L., 21 Mar 2018, In : Nanoscale. 10, 11, p. 5318-5324 7 p.Research output: Contribution to Journal › Article › Academic › peer-review
Atomic force microscopy
Mechanical properties
Unilamellar Liposomes
Lipid bilayers
Nanoindentation
Nanomechanics of Extracellular Vesicles Reveals Vesiculation Pathways
Sorkin, R., Huisjes, R., Bošković, F., Vorselen, D., Pignatelli, S., Ofir-Birin, Y., Freitas Leal, J. K., Schiller, J., Mullick, D., Roos, W. H., Bosman, G., Regev-Rudzki, N., Schiffelers, R. M. & Wuite, G. J. L., 27 Sep 2018, In : Small. 14, 39, p. 1-8 8 p., 1801650.Research output: Contribution to Journal › Article › Academic › peer-review
Nanomechanics
Lipids
Proteins
Blood
Erythrocytes
Normal stresses in semiflexible polymer hydrogels
Vahabi, M., Vos, B. E., De Cagny, H. C. G., Bonn, D., Koenderink, G. H. & Mackintosh, F. C., 28 Mar 2018, In : Physical Review E. 97, 3, p. 1-11 11 p., 032418.Research output: Contribution to Journal › Article › Academic › peer-review
Hydrogel
fibrin
Polymers
gels
polymers
On display: Autotransporter secretion and application
Van Ulsen, P., Zinner, K. M., Jong, W. S. P. & Luirink, J., 1 Sep 2018, In : FEMS Microbiology Letters. 365, 18, p. 1-10 10 p., fny165.Research output: Contribution to Journal › Review article › Academic › peer-review
Membranes
Proteins
Secretory Pathway
Virulence Factors
Gram-Negative Bacteria
Probing cellular mechanics with acoustic force spectroscopy
Sorkin, R., Bergamaschi, G., Kamsma, D., Brand, G., Dekel, E., Ofir-Birin, Y., Rudik, A., Gironella, M., Ritort, F., Regev-Rudzki, N., Roos, W. H. & Wuite, G. J. L., 8 Aug 2018, In : Molecular Biology of the Cell. 29, 16, p. 2005-2011 7 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Mechanics
Acoustics
Spectrum Analysis
Erythrocytes
Biophysics
Quantifying Local Molecular Tension Using Intercalated DNA Fluorescence
King, G. A., Biebricher, A. S., Heller, I., Peterman, E. J. G. & Wuite, G. J. L., 11 Apr 2018, In : Nano Letters. 18, 4, p. 2274-2281 8 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
DNA
deoxyribonucleic acid
Fluorescence
fluorescence
Catenated DNA
Reconstitution of anaphase DNA bridge recognition and disjunction
Sarlós, K., Biebricher, A. S., Bizard, A. H., Bakx, J. A. M., Ferreté-Bonastre, A. G., Modesti, M., Paramasivam, M., Yao, Q., Peterman, E. J. G., Wuite, G. J. L. & Hickson, I. D., 3 Sep 2018, In : Nature Structural and Molecular Biology. 25, 9, p. 868-876 9 p.Research output: Contribution to Journal › Article › Academic › peer-review
Anaphase
DNA
Chromosome Segregation
Proteins
Chromatids
Single-Cell Acoustic Force Spectroscopy: Resolving Kinetics and Strength of T Cell Adhesion to Fibronectin
Kamsma, D., Bochet, P., Oswald, F., Alblas, N., Goyard, S., Wuite, G. J. L., Peterman, E. J. G. & Rose, T., 11 Sep 2018, In : Cell Reports. 24, 11, p. 3008-3016 9 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
T-cells
Cell adhesion
Fibronectins
Acoustics
Cell Adhesion
Single Molecule Analysis: Methods and Protocols
Peterman, E. (ed.), 2018, 2 ed. New York: Humana Press, Methods Mol Biol. 380 p. (Methods in molecular biology; vol. 1665)Research output: Book / Report › Book editing › Academic
Molecules
Molecular biology
Cytology
Biophysics
Biochemistry
Single-molecule fluorescence microscopy in living Caenorhabditis elegans
van Krugten, J. & Peterman, E. J. G., 2018, Single Molecule Analysis: Methods and Protocols. Humana Press Inc, p. 145-154 10 p. (Methods in Molecular Biology; vol. 1665).Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic
Caenorhabditis elegans
Fluorescence Microscopy
Cilia
Molecular Dynamics Simulation
Organelles
Single-molecule imaging of Escherichia coli transmembrane proteins
Varadajan, A., Oswald, F. & Bollen, Y. J. M., 2018, Methods in Molecular Biology. Peterman, E. (ed.). Humana Press Inc, Vol. 1665. p. 135-144 10 p. (Methods in Molecular Biology; vol. 1665).Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic › peer-review
Escherichia coli Proteins
Biological Phenomena
Cell Fusion
Gram-Negative Bacteria
Fluorescence Microscopy
Single-molecule measurements using acoustic force spectroscopy (AFS)
Kamsma, D. & Wuite, G. J. L., Jan 2018, Methods in Molecular Biology. New York, NY: Humana Press Inc, p. 341-351 11 p. (Methods in Molecular Biology; vol. 1665).Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic › peer-review
Acoustics
Spectrum Analysis
Single-Molecule Turnarounds of Intraflagellar Transport at the C. elegans Ciliary Tip
Mijalkovic, J., van Krugten, J., Oswald, F., Acar, S. & Peterman, E. J. G., 13 Nov 2018, In : Cell Reports. 25, 7, p. 1701-1707.e2 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Cilia
Dyneins
Fluorescence microscopy
Fluorescence Microscopy
Microtubules
Structural analysis of the interaction between the bacterial cell division proteins FTSQ and FTSB
Kureisaite-Ciziene, D., Varadajan, A., McLaughlin, S. H., Glas, M., Silva, A. M., Luirink, R., Mueller, C., Blaauwen, T. D., Grossmann, T. N., Luirink, J. & Löwe, J., 11 Sep 2018, In : mBio. 9, 5, p. 1-17 17 p., e01346-18.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Cell Division
Proteins
Bacteria
Periplasm
Membrane Proteins
The anti-mycobacterial activity of the cytochrome bcc inhibitor Q203 can be enhanced by small-molecule inhibition of cytochrome bd.
Lu, P., Asseri, A. H. O., Kremer, M., Maaskant, J., Ummels, R., Lill, H. & Bald, D., 8 Feb 2018, In : Scientific Reports. 8Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Cytochromes
Electron Transport
Mycobacterium tuberculosis
Energy Metabolism
Mycobacterium smegmatis
The fluid membrane determines mechanics of erythrocyte extracellular vesicles and is softened in hereditary spherocytosis
Vorselen, D., van Dommelen, S. M., Sorkin, R., Piontek, M. C., Schiller, J., Döpp, S. T., Kooijmans, S. A. A., van Oirschot, B. A., Versluijs, B. A., Bierings, M. B., van Wijk, R., Schiffelers, R. M., Wuite, G. J. L. & Roos, W. H., 23 Nov 2018, In : Nature Communications. 9, p. 1-9 9 p., 4960.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Hereditary Spherocytosis
erythrocytes
Mechanics
Blood
Erythrocytes
The Interaction between Bacteriophage T7 DNA Polymerase and Gene 2.5 Protein at the Single-Molecule Level
Bakx, J., Cabanas-Danes, J., Peterman, E. J. G. & Wuite, G. J. L., 2 Feb 2018, In : Biophysical Journal. 114, 3, p. 395A-395AResearch output: Contribution to Journal › Meeting Abstract › Academic
The Role of Network Architecture in Collagen Mechanics
Jansen, K. A., Licup, A. J., Sharma, A., Rens, R., MacKintosh, F. C. & Koenderink, G. H., 5 Jun 2018, In : Biophysical Journal. 114, 11, p. 2665-2678 14 p.Research output: Contribution to Journal › Article › Academic › peer-review
Mechanics
Collagen
Polymerization
Extracellular Matrix
Rheology
The Soft Side of Extracellular Vesicles
Sorkin, R., Huisjes, R., Boskovic, F., Vorselen, D., Pignatelli, S., Ofir-Birin, Y., Leal, J. K. F., Schiller, J., Roos, W. H., Bosman, G., Regev-Rudzki, N., Schiffelers, R. M. & Wuite, G. J. L., 2 Feb 2018, In : Biophysical Journal. 114, 3, p. 562A-562AResearch output: Contribution to Journal › Meeting Abstract › Academic
Towards Dense Object Tracking in a 2D Honeybee Hive
Bozek, K., Hebert, L., Mikheyev, A. S. & Stephens, G. J., 14 Dec 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2018. IEEE Computer Society, p. 4185-4193 9 p. 8578538. (IEEE/CVF Conference on Computer Vision and Pattern Recognition).Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
Neural networks
Video recording
Network architecture
Labeling
Image analysis