LaserLaB - Molecular Biophysics

Research Output 1999 2019

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2018

A brief introduction to single-molecule fluorescence methods

van den Wildenberg, S. M. J. L., Prevo, B. & Peterman, E. J. G., 2018, Single Molecule Analysis: Methods and Protocols. Humana Press Inc, p. 93-113 21 p. (Methods in Molecular Biology; vol. 1665).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Fluorescence Microscopy
Fluorescence
Fluorescence Polarization
Biological Science Disciplines
Energy Transfer

Single-molecule fluorescence microscopy in living Caenorhabditis elegans

van Krugten, J. & Peterman, E. J. G., 2018, Single Molecule Analysis: Methods and Protocols. Humana Press Inc, p. 145-154 10 p. (Methods in Molecular Biology; vol. 1665).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Caenorhabditis elegans
Fluorescence Microscopy
Cilia
Molecular Dynamics Simulation
Organelles

Single-molecule imaging of Escherichia coli transmembrane proteins

Varadajan, A., Oswald, F. & Bollen, Y. J. M., 2018, Methods in Molecular Biology. Peterman, E. (ed.). Humana Press Inc, Vol. 1665. p. 135-144 10 p. (Methods in Molecular Biology; vol. 1665).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Escherichia coli Proteins
Biological Phenomena
Cell Fusion
Gram-Negative Bacteria
Fluorescence Microscopy

Single-molecule measurements using acoustic force spectroscopy (AFS)

Kamsma, D. & Wuite, G. J. L., Jan 2018, Methods in Molecular Biology. New York, NY: Humana Press Inc, p. 341-351 11 p. (Methods in Molecular Biology; vol. 1665).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Acoustics
Spectrum Analysis
2017

Order and disorder in the extracellular matrix

van der Horst, A. & Wuite, G. J. L., 1 Jan 2017, The Oxford Handbook of Soft Condensed Matter. Oxford University Press., p. 475-496 22 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

disorders
matrices
collagens
elastin
mechanical properties

Probing DNA-DNA Interactions with a Combination of Quadruple-Trap Optical Tweezers and Microfluidics

Brouwer, I., King, G. A., Heller, I., Biebricher, A. S., Peterman, E. J. G. & Wuite, G. J. L., 2017, Methods in Molecular Biology. Walker, J. M. (ed.). Humana Press, Methods Mol Biol, Vol. 1486. p. 275-293 19 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Optical Tweezers
Microfluidics
DNA
Proteins
Buffers

Recent Advances in Biological Single-Molecule Applications of Optical Tweezers and Fluorescence Microscopy

Hashemi Shabestari, M., Meijering, A. E. C., Roos, W. H., Wuite, G. J. L. & Peterman, E., 2017, Single-Molecule Enzymology: Nanomechanical Manipulation and Hybrid Methods. Elsevier, Vol. 582. p. 85-119

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Optical tweezers
Fluorescence microscopy
Molecules
Molecular Motor Proteins
Biomolecules
2011

A brief introduction to single-molecule fluorescence methods

Wildenberg, S. M. J. L., Prevo, B. & Peterman, E. J. G., 2011, Single Molecule Analysis, Series Methods in Molecular Biology. Peterman, EJG. & Wuite, GJL. (eds.). New York: Humana Press, Vol. 783. p. 81-99

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Fluorescence
Molecules
Fluorescence microscopy
Distance measurement
Fluorescent Dyes

How to perform a nanoindentation experiment on a virus

Roos, W. H., 2011, Single Molecule Analysis, Series Methods in Molecular Biology. Peterman, EJG. & Wuite, GJL. (eds.). New York: Humama press, 2011 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Introduction to optical tweezers: background, system designs, and commercial solutions

van Mameren, J., Wuite, G. J. L. & Heller, I., 2011, Single Molecule Analysis: Methods and Protocols. Peterman, EJG. & Wuite, GJL. (eds.). New York: Humana Press, p. 1-20 20 p. (Methods in Molecular Biology; vol. 783).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

systems engineering
molecules
spatial resolution
trapping
methodology
2010

Mechanical properties of viruses

Roos, W. H. & Wuite, G. J. L., 2010, Emerging Topics in Physical Virology. Stockley, P. & Twarock, R. (eds.). London: Imperial College Press

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

method for rangings and noise reduction of low coherence interferometry LCI and optical coherence tomography OCT signals by parallel detection of spectral bands

Boer, JF. D., Tearney, G. J. & Bouma, BE., 2010, US Patent 7,797,119. (US Patent 7,797,119).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

spectral bands
noise reduction
interferometry
tomography
shot noise

Role of DNA conformation in gene regulation

Metzler, R., van den Broek, B., Wuite, G. J. L. & Lomholt, M. A., 2010, Biophysics of DNA-protein interactions: From single molecules to biological systems. Williams, M. & Maher, J. (eds.). Springer

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Structure and Dynamics of the Kinesin-Microtubule Interaction Revealed by Fluorescence Polarization Microscopy

Sosa, H. A., Asenjo, B. & Peterman, E. J. G., 2010, Methods in Cell Biology, Vol 95.. p. 505-519

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic