Research Output 1989 2020

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Article
2015

Efficient computations with the likelihood ratio distribution

Kruijver, M. V., 2015, In : Forensic Science International-Genetics. 14, p. 116-124

Research output: Contribution to JournalArticleAcademicpeer-review

Forensic Genetics
Normal Distribution
Complex Mixtures

Equivalence after extension for compact operators on Banach spaces

van der Horst, S., Messerschmidt, M. & Ran, A. C. M., 2015, In : Journal of Mathematical Analysis and Applications. 431, 1, p. 136-149

Research output: Contribution to JournalArticleAcademicpeer-review

Banach spaces
Compact Operator
Mathematical operators
Equivalence
Banach space

Étale cohomology, cofinite generation, and p-adic L-functions

de Jeu, R. M. H. & Navilarekallu, T. V., 2015, In : Annales de l'Institut Fourier. 65, 6, p. 2331-2383 53 p.

Research output: Contribution to JournalArticleAcademicpeer-review

P-adic L-function
P-adic
Cohomology
Cohomology Group
Twist

Euclidean distance degrees of real algebraic groups

Draisma, J. & Baaijens, J. A., 2015, In : Linear Algebra and its Applications. 467, p. 174-187

Research output: Contribution to JournalArticleAcademicpeer-review

Every k-separable Cech-complete space is subcompact

van Mill, J. & Tkachuk, V. V., 2015, In : Revista De La Real Academia De Ciencias Exactas Fisicas Y Naturales Serie A-Matematicas. 109, 1, p. 65-71

Research output: Contribution to JournalArticleAcademicpeer-review

Compact Space
Subspace
Countable
Countable Tightness
Countable union

Factorization formulas for 2D critical percolation, revisited

Conijn, R. P., 2015, In : Stochastic Processes and Their Applications. 125, 11, p. 4102-4116

Research output: Contribution to JournalArticleAcademicpeer-review

Sum formula
Scaling Limit
Triangular Lattice
Factorization
Half-plane

Fast flux module detection using matroid theory.

Reimers, A. C., Bruggeman, F. J., Olivier, B. G. & Stougie, L., 2015, In : Journal of Computational Biology. 22, p. 414-424 5.

Research output: Contribution to JournalArticleAcademicpeer-review

Matroid
Fluxes
Metabolic Networks and Pathways
Module
Genome

Finiteness results for Abelian tree models

Draisma, J. & Eggermont, R. H., 2015, In : Journal of the European Mathematical Society. 17, 4, p. 711-738

Research output: Contribution to JournalArticleAcademicpeer-review

Finiteness
Symmetry Group
Equivariant
Stars
Star

Flow Laminarization and Acceleration by Suspended Particles

Bertsch, M., Hulshof, J. & Prostokishin, V. M., 2015, In : SIAM journal on applied mathematics. 75, 4, p. 1852-1883

Research output: Contribution to JournalArticleAcademicpeer-review

Extremes
Hurricanes
Asymptotic analysis
Formal Analysis
Laplace transforms

Fluid approximation of a call center model with redials and reconnects

Ding, S., Remerova, M., van der Mei, R. D. & Zwart, B., 2015, In : Performance Evaluation. 92, p. 24-39

Research output: Contribution to JournalArticleAcademicpeer-review

Call Centres
Customers
Fluid Limits
Fluid
Fluids

Generalized Fermat equations: A miscellany

Bennett, M. A., Chen, I., Dahmen, S. R. & Yazdani, S., 2015, In : International Journal of Number Theory. 11, 1, p. 1-28 28 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fermat
Galois Representations
Integer
Coprime
Appeal

G Protein–Coupled Receptor Signaling Networks from a Systems Perspective.

Roth, S., Kholodenko, B. N., Smit, M. J. & Bruggeman, F. J., 2015, In : Molecular Pharmacology. 88, 3, p. 604-616

Research output: Contribution to JournalArticleAcademicpeer-review

Systems Biology
G-Protein-Coupled Receptors
Biophysical Phenomena
Proteins
Biochemical Phenomena

Heavy-traffic limits for polling models with exhaustive service and non-FCFS service order policies

Vis, P., Bekker, R. & van der Mei, R. D., 2015, In : Advances in Applied Probability. 47, 4, p. 989-1014

Research output: Contribution to JournalArticleAcademicpeer-review

File

High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer

van den Broek, E., Dijkstra, M. J. J., Krijgsman, O., Sie, D. L. S., Haan, J. C., Traets, J. J. H., van de Wiel, M. A., Nagtegaal, I. D., Punt, C. J. A., Carvalho, B., Ylstra, B., Abeln, S., Meijer, G. A. & Fijneman, R. J. A., 2015, In : PLoS ONE. 10, 9, e0138141.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Chromosome Breakage
colorectal neoplasms
Colorectal Neoplasms
Genes
genes

HOMOLOGY OF NON-k-OVERLAPPING DISCS

Dobrinskaya, N. E. & Turchin, V., 2015, In : Homology, Homotopy and Applications. 17, 2, p. 261-290

Research output: Contribution to JournalArticleAcademicpeer-review

Operad
Bimodule
Algebraic Structure
Immersion
Overlapping

How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization.

Bosdriesz, E., Molenaar, D., Teusink, B. & Bruggeman, F. J., 2015, In : The FEBS Journal. 282, p. 2029-2044 10.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Ribosomes
Bacteria
Escherichia coli
Growth
Ribosomal Proteins

Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models.

Maarleveld, T. R., Wortel, M. T., Olivier, B. G., Teusink, B. & Bruggeman, F. J., 2015, In : PLoS Computational Biology. 7, 11, 4.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Metabolic Networks and Pathways
Optimality
Genome
genome
Genes

K-independent percolation on trees

Mathieu, P. & Temmel, C., 2015, In : Stochastic Processes and Their Applications. 122, 3, p. 1129-1153

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Method of moments
Moment Method
Minimality
Argumentation
Branching

Learning optimal policies in MDPs with value function discovery

Onderwater, M., Bhulai, S. & van der Mei, R. D., 2015, In : ACM Sigmetrics Performance Evaluation Review. 43, 2, p. 7-9

Research output: Contribution to JournalArticleAcademicpeer-review

Lossy gossip and the composition of metrics

Brouwer, A. E., Draisma, J. & Frenk, B. J., 2015, In : Discrete and Computational Geometry. 53(4), p. 890-913

Research output: Contribution to JournalArticleAcademicpeer-review

M-CSF Priming of Osteoclast Precursors Can Cause Osteoclastogenesis-Insensitivity, Which Can be Prevented and Overcome on Bone

de Vries, T. J., Schoenmaker, T., Aerts, D., Grevers, L. C., Souza, P. P. C., Nazmi, K., van de Wiel, M. A., Ylstra, B., van Lent, P. L., Leenen, P. J. M. & Everts, V., 2015, In : Journal of Cellular Physiology. 230, 1, p. 210-225

Research output: Contribution to JournalArticleAcademicpeer-review

Macrophage Colony-Stimulating Factor
Osteoclasts
Osteogenesis
Bone
Bone and Bones

Metabolism at Evolutionary Optimal States.

Rabbers, I., van Heerden, J. H., Nordholt, N., Bachmann, H., Teusink, B. & Bruggeman, F. J., 2015, In : Metabolites. 5, 2, p. 311-343

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing

Neerincx, M., Sie, D. L. S., van de Wiel, M. A., van Grieken, N. C. T., Burggraaf, J. D., Dekker, H., Eijk, P. P., Ylstra, B., Verhoef, C., Meijer, G. A., Buffart, T. E. & Verheul, H. M. W., 2015, In : Oncogenesis. 4, e170.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
MicroRNAs
Colorectal Neoplasms
Neoplasm Metastasis
Neoplasms
Cluster Analysis

Modeling failure of high performance fibers: on the prediction of long-term time-to-failure

Knoester, H., Hulshof, J. & Meester, R., 2015, In : Journal of Materials Science. 50, 19, p. 6277-6290

Research output: Contribution to JournalArticleAcademicpeer-review

Fibers
Maximum likelihood estimation
Economics
Monte Carlo simulation

Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism

Rybakova, E. N., Bruggeman, F. J., Tomaszewska, A., Mone, M. J., Carlberg, C. & Westerhoff, H. V., 2015, In : PLoS Computational Biology. 11, 4

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Ratchet
Bursting
Chromatin
Cycling
Transcription

Multi-tasking of biosynthetic and energetic functions of glycolysis explained by supply and demand logic.

van Heerden, J. H., Bruggeman, F. J. & Teusink, B., 2015, In : BioEssays. 37, p. 34-45 1.

Research output: Contribution to JournalArticleAcademicpeer-review

Multitasking
Glycolysis
Metabolic Networks and Pathways
Biosynthesis
Free energy

Noetherianity for infinite-dimensional toric varieties

Draisma, J., Eggermont, R. H., Krone, R. & Leykin, A., 2015, In : Algebra & Number Theory. 9, 8, p. 1857-1880

Research output: Contribution to JournalArticleAcademicpeer-review

Toric Varieties
Monoid
Monomial
kernel
Finiteness

On K_2 of certain families of curves

de Jeu, R. M. H. & Liu, H., 2015, In : International Mathematics Research Notices. 2015, 21, p. 10929-10958 30 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Number field
Curve
Genus
kernel
Real Quadratic Fields

On the control of queueing systems with aging state information

Onderwater, M., Bhulai, S. & van der Mei, R. D., 2015, In : Stochastic Models. 31, 4, p. 588-617

Research output: Contribution to JournalArticleAcademicpeer-review

Queueing System
Aging of materials
Controllers
Controller
Markov Decision Process

Optimal appointment scheduling in continuous time: the lag order approximation method

Vink, W., Kuiper, A., Kemper, B. & Bhulai, S., 2015, In : European Journal of Operational Research. 240, 1, p. 213-219

Research output: Contribution to JournalArticleAcademicpeer-review

Optimal Scheduling
Approximation Methods
Continuous Time
Scheduling
Schedule

Optimization of overflow policies in call centers

Koole, G. M., Nielsen, B. & Nielsen, T., 2015, (Accepted/In press) In : Probability in the Engineering and Informational Sciences.

Research output: Contribution to JournalArticleAcademicpeer-review

Call Centres
Overflow
Waiting Time
Optimization
Customers

Parameterization of Invariant Manifolds for Periodic Orbits I: Efficient Numerics via the Floquet Normal Form

Castelli, R., Lessard, J. P. & James, J. D. M., 2015, In : SIAM Journal on Applied Dynamical Systems. 14, 1, p. 132-167 36 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Invariant Manifolds
Parameterization
Numerics
Periodic Orbits
Normal Form

Parametric replenishment policies for inventory systems with lost sales and fixed order cost

Bijvank, M., Bhulai, S. & Huh, W. T., 2015, In : European Journal of Operational Research. 241, 2, p. 381-390

Research output: Contribution to JournalArticleAcademicpeer-review

Lost Sales
Inventory Systems
Sales
Inventory control
Costs

Planar Ising magnetization field I. Uniqueness of the critical scaling limit

Camia, F., Garban, C. & Newman, C. M., 2015, In : Annals of probability. 43, p. 528-571

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Scaling Limit
Ising
Magnetization
Ising Model
Uniqueness

p-Values should not be used for evaluating the strength of DNA evidence

Kruijver, M., Meester, R. & Slooten, K., 2015, In : Forensic Science International-Genetics. 16, p. 226-231

Research output: Contribution to JournalArticleAcademicpeer-review

Forensic Genetics
DNA

Rate-optimal Bayesian intensity smoothing for inhomogeneous Poisson processes

Belitser, E. N., Serra, P. & van Zanten, H., 2015, In : Journal of Statistical Planning and Inference. 166, p. 24-35

Research output: Contribution to JournalArticleAcademicpeer-review

Inhomogeneous Poisson Process
Optimal Rates
Splines
Intensity Function
Spline

Recursive tracking algorithm for a predictable time-varying parameter of a time series

Belitser, E. N. & Serra, P., 2015, In : Mathematical Methods of Statistics. 24, p. 243-265

Research output: Contribution to JournalArticleAcademicpeer-review

Revenue Management under customer choice behaviour with cancellations and overbooking.

Sierag, D. D., Koole, G. M., van der Mei, R. D., van der Rest, J. I. & Zwart, A. P., 2015, In : European Journal of Operational Research. 246, p. 170-185

Research output: Contribution to JournalArticleAcademicpeer-review

Rigorous Computation of a Radially Symmetric Localized Solution in a Ginzburg–Landau Problem

van den Berg, G. J. B., Groothedde, C. M. & Williams, J. F., 2015, In : SIAM Journal on Applied Dynamical Systems. 14, 1, p. 423-447

Research output: Contribution to JournalArticleAcademicpeer-review

Radially Symmetric Solutions
Swift-Hohenberg Equation
Ginzburg-Landau
Green's function
Integral equations

Rigorous numerics in dynamics

van den Berg, G. J. B. & Lessard, J. P., 2015, In : Notices of the American Mathematical Society. 62, p. 1057-1061

Research output: Contribution to JournalArticleAcademicpeer-review

Role of white-matter pathways in coordinating alpha oscillations in resting visual cortex

Hindriks, R., Woolrich, M., Luckhoo, H., Joensson, M., Mohseni, H., Kringelbach, M. L. & Deco, G., 2015, In : NeuroImage. 106, p. 328–339

Research output: Contribution to JournalArticleAcademicpeer-review

Semi-supervised adaptive-height snipping of the hierarchical clustering tree

Obulkasim, A., Meijer, G. A. & van de Wiel, M. A., 2015, In : BMC Bioinformatics. 16, 15.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Hierarchical Clustering
Cluster Analysis
Clustering algorithms
Auxiliary Information
Distance Measure

Sharpness versus robustness of the percolation transition in 2D contact processes

van den Berg, J., Bjornberg, J. & Heydenreich, M., 2015, In : Stochastic Processes and Their Applications. 125, p. 513-537

Research output: Contribution to JournalArticleAcademicpeer-review

Contact Process
Sharpness
Infection
Robustness
Vegetation

Shifted powers in binary recurrence sequences

Bennett, M. A., Dahmen, S. R., Mignotte, M. & Siksek, S., 2015, In : Mathematical Proceedings of the Cambridge Philosophical Society. 158, 2, p. 305-329 25 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Recurrence
Binary

Silence on the relevant literature and errors in implementation.

Bastiaens, P., Birtwistle, M. R., Blüthgen, N., Bruggeman, F. J., Cho, K. H., Cosentino, C., de la Fuente, A., Hoek, J. B., Kiyatkin, A., Klamt, S., Kolch, W., Legewie, S., Mendes, P., Naka, T., Santra, T., Sontag, E., Westerhoff, H. V. & Kholodenko, B. N., 2015, In : Nature Biotechnology. 33, 4, p. 336-339

Research output: Contribution to JournalArticleAcademicpeer-review

Simple forms and invariant subspaces of H-expansive matrices

Ran, A. C. M., Fourie, J. H., Groenewald, G. J. & Janse van Rensburg, D. B., 2015, In : Linear Algebra and its Applications. 470, p. 300-340

Research output: Contribution to JournalArticleAcademicpeer-review

Invariant Subspace
Maximal Invariant
Invertible matrix
Positive semidefinite
Symmetric matrix

Simulation-based optimization of staffing levels in an emergency department

Koole, G., Jouini, O., wargon, M., Ghanes, K. & Jemai, Z., 2015, In : Simulation. 91, 10, p. 942-953

Research output: Contribution to JournalArticleAcademicpeer-review

State space formulas for a suboptimal rational Leech problem II: Parametrization of all solutions

Frazho, A. E., ter Horst, S. & Kaashoek, M. A., 2015, In : Operator Theory: Advances and Applications. 244, p. 149-179

Research output: Contribution to JournalArticleAcademicpeer-review

Parametrization
State Space
Spectral Factorization
Algebraic Riccati Equation
Commutant

Stationary Coexistence of Hexagons and Rolls via Rigorous Computations

van den Berg, G. J. B., Deschênes, A., Lessard, J. P. & Mireles-James, J., 2015, In : SIAM Journal on Applied Dynamical Systems. 14, 2, p. 942-979

Research output: Contribution to JournalArticleAcademicpeer-review

Coexistence
Hexagon
Boundary value problems
Boundary Value Problem
Heteroclinic Solutions

Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure

Hanemaaijer, M. J., Roling, W. F. M., Olivier, B. G., Khandelwal, R. A., Teusink, B. & Bruggeman, F. J., 2015, In : Frontiers in Microbiology. 6, 213.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Metagenomics
Genome
Ecosystem
Theoretical Models
Occupational Health