Research Output 1989 2020

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Article
2014

Lattice structures for attractors I

Kalies, W. D., Mischaikow, K. & van der Vorst, R. C. A. M., 2014, In : Journal of computational and applied mathematics. 1, 2, p. 307-338

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells.

van Heerden, J. H., Wortel, M. T., Bruggeman, F. J., Heijnen, J. J., Bollen, Y. J. M., Planque, R., Hulshof, J., O'Toole, T. G., Wahl, S. A. & Teusink, B., 2014, In : Science. 343, 6174, 1245114.

Research output: Contribution to JournalArticleAcademicpeer-review

Glycolysis
Substrate Cycling
Energy Metabolism
Hydrolysis
Adenosine Triphosphate

LQ control for coordinated linear systems.

Ran, A. C. M., van Schuppen, J. H. & Kempker, P., 2014, In : IEEE Transactions on Automatic Control. 59, p. 851-862

Research output: Contribution to JournalArticleAcademicpeer-review

Linear systems
State feedback

Lumpings of Markov chains, entropy rate preservation, and higher-order lumpability

Geiger, C. B. & Temmel, C., 2014, In : Journal of Applied Probability.

Research output: Contribution to JournalArticleAcademicpeer-review

Mean Square Convergence Rates for Maximum (Quasi) Likelihood Estimation.

den Boer, A. V. & Zwart, A. P., 2014, In : Stochastic Systems. 4, p. 1-29

Research output: Contribution to JournalArticleAcademicpeer-review

Mechanistic stochastic model of histone modification pattern formation.

Annink-Groenen, L. C. M., Maarleveld, T. R., Verschure, P. J. & Bruggeman, F. J., 2014, In : Epigenetics & Chromatin. 7, p. 30

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Histone Code
Chromatin
Gene Expression Regulation
Genes
Nucleosomes

Metabolic states with maximal specific rate carry flux through an elementary flux mode.

Wortel, M. T., Peters, H., Hulshof, J., Teusink, B. & Bruggeman, F. J., 2014, In : The FEBS Journal. 28, p. 1547-1555

Research output: Contribution to JournalArticleAcademicpeer-review

Genes
Metabolic Networks and Pathways
Fluxes
Genome
Enzyme kinetics

Modelling of Trends in Twitter Using Retweet Graph Dynamics

ten Thij, M. C., Ouboter, T., Worm, D. T. H., van den Berg, J. L., Bhulai, S. & Litvak, N., 2014, In : Lecture Notes in Computer Science. 2014, 8882, p. 132-147

Research output: Contribution to JournalArticleAcademicpeer-review

Dynamic Graphs
Graph in graph theory
Modeling
Connected Components
User Behavior

Morse-Conley-Floer homology

Rot, T. O. & van der Vorst, R. C. A. M., 2014, In : Journal of Topology and Analysis. 6, 3, p. 305-338

Research output: Contribution to JournalArticleAcademicpeer-review

Floer Homology
Homology
Morse Function
Transversality
Gradient Flow

Mutation models for DVI analysis

Ricciardi, F. & Slooten, K., 2014, In : Forensic Science International: Genetics. 11, 1, p. 85-95 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Disaster Victims
Mutation
DNA
Ireland
Alleles

On structural properties of the value function for an unbounded jump Markov process with an application to a processor-sharing retrial queue

Bhulai, S., Brooms, A. C. & Spieksma, F. M., 2014, In : Queueing Systems. 76, 4, p. 425-446

Research output: Contribution to JournalArticleAcademicpeer-review

Markov Jump Processes
Retrial Queue
Processor Sharing
Value Function
Structural Properties

On the accuracy of phase-type approximations of heavy-tailed risk models.

Vatamidou, E., Adan, I. J. B. F., Vlasiou, M. & Zwart, A. P., 2014, In : Scandinavian Actuarial Journal. 6, p. 510-534

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Ruin Probability
Approximation
Completely Monotone
Phase-type Distribution
Probability of Ruin

On the destruction of minimal foliations

Mramor, B. & Rink, B. W., 2014, In : Proceedings of the London Mathematical Society. 108, p. 704-737

Research output: Contribution to JournalArticleAcademicpeer-review

Recurrence relation
Foliation
Twist Map
Lamination
Rotation number

On the equation $a^3+b^{3n}=c^2$

Bennett, M. A., Chen, I., Dahmen, S. R. & Yazdani, S., 2014, In : Acta Arithmetica. 163, 4, p. 327-343 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Coprime
Integer

On the preceding paper by R.B. Leech

Kaashoek, M. A. & Rovnyak, J., 2014, In : Integral Equations and Operator Theory. 78, 1, p. 75-77 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Operator Inequality
Analytic function
Factorization
History

On two-queue Markovian polling systems with exhaustive service.

Dorsman, J. L., Boxma, O. J. & van der Mei, R. D., 2014, In : Queueing Systems. 78, p. 287-311

Research output: Contribution to JournalArticleAcademicpeer-review

Polling Systems
Queue Length Distribution
Queue
Waiting Time Distribution
Polling

Optimal strategies for familial searching

Kruijver, M., Meester, R., Slooten, K. & Meester, R. W. J., 2014, In : Forensic Science International: Genetics. 13, p. 90-103 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Databases
Nucleic Acid Databases
Crime
Ireland
Decision Making

Optimization of stress response through the nuclear receptor-mediated cortisol signalling network.

Kolodkin, A., Sahin, N., Phillips, A., Hood, S. R., Bruggeman, F. J., Westerhoff, H. V. & Plant, N., 2014, In : Nature Communications. 4

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Cytoplasmic and Nuclear Receptors
Hydrocortisone
optimization
Biological Adaptation
affinity

Perfect powers expressible as sums of two fifth or seventh powers

Dahmen, S. R. & Siksek, S., 2014, In : Acta Arithmetica. 164, 1, p. 65-100 36 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Signature
Fermat
Integer
Diophantine equation
Descent

Random fluid limit of an overloaded polling model.

Remerova, M., Foss, S. & Zwart, A. P., 2014, In : Advances in Applied Probability. 46, 1, p. 76-101

Research output: Contribution to JournalArticleAcademicpeer-review

Fluid Limits
Polling
Multitype Branching Process
Applied Probability
M/G/1 Queue

Real and complex invariant subspaces for matrices which are positive real in an indefinite inner product space.

Ran, A. C. M., Fourie, J. H., Groenewald, G. J. & Janse van Rensburg, D. B., 2014, In : Electronic Journal of Linear Algebra. 27, p. 124-145

Research output: Contribution to JournalArticleAcademicpeer-review

Recursive estimation of conditional spatial medians and conditional quantiles

Belitser, E. N. & Serra, P., 2014, In : Sequential Analysis. 33, p. 519-538

Research output: Contribution to JournalArticleAcademicpeer-review

Conditional Quantiles
Recursive Estimation
Multivariate Distribution
Recursive Algorithm
Upper bound

Robust minimality of iterated function systems with two generators

Homburg, A. J. & Nassiri, M., 2014, In : Ergodic theory and dynamical systems. 34, 6, p. 1914-1929

Research output: Contribution to JournalArticleAcademicpeer-review

Iterated Function System
Minimality
Diffeomorphisms
Generator
Skew Product

Scale and skill mix efficiencies in nursing home staffing: Inside the black box

Moeke, D., Koole, G. M. & Verkooijen, L. H. E. C., 2014, In : Health Systems. 3, p. 18-28

Research output: Contribution to JournalArticleAcademicpeer-review

Shearer's measure and stochastic domination of product measures

Temmel, C., 2014, In : Journal of Theoretical Probability.

Research output: Contribution to JournalArticleAcademicpeer-review

Stochastic Domination
Product Measure
Finite Graph
Domination
Graph

Simultaneously learning and optimizing by controlled variance pricing.

den Boer, A. V. & Zwart, A. P., 2014, In : Management Science. 60, p. 770-783

Research output: Contribution to JournalArticleAcademicpeer-review

Pricing
Pricing policy
Demand model
Taboo
Time scales

Species interactions and the structure of complex communication networks

Tobias, J. A., Planque, R., Cram, D. & Seddon, N., 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 3, p. 1020-1025 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

State space formulas for a suboptimal rational Leech problem I: Maximum entropy solution

Frazho, A. E., ter Horst, S. & Kaashoek, M. A., 2014, In : Integral Equations and Operator Theory. 79, 4, p. 533-553

Research output: Contribution to JournalArticleAcademicpeer-review

Entropy Solution
Strictly positive
Maximum Entropy
State Space

State space formulas for stable rational matrix solutions of a Leech problem

Frazho, A. E., ter Horst, S. & Kaashoek, M. A., 2014, In : Indagationes Mathematicae. 25, p. 250-274

Research output: Contribution to JournalArticleAcademicpeer-review

State Space
Matrix Function
Rational function

Stochastic simulation of prokaryotic two component signaling indicates stochasticity-induced active-locking and growth rate dependent bistability.

Wei, K., Moinat, M., Maarleveld, T. R. & Bruggeman, F. J., 2014, In : Molecular BioSystems. 10, 9, p. 2338-2346

Research output: Contribution to JournalArticleAcademicpeer-review

Growth
Cell Division
Signal Transduction
Gene Expression
Population

Submodels in Carnap's early axiomatics revisited

Loeb, I., 2014, In : Erkenntnis. 79, 2, p. 405-429

Research output: Contribution to JournalArticleAcademicpeer-review

Axioms
Predicate
Axiom
Axiomatics
Rudolf Carnap

Sufficient Conditions for Uniform Bounds in Abstract Polymer Systems and Explorative Partition Schemes

Temmel, C., 2014, In : Journal of Statistical Physics.

Research output: Contribution to JournalArticleAcademicpeer-review

Uniform Bound
partitions
Polymers
Partition
Spanning Subgraph

The combined evidential value of autosomal and Y-chromosomal DNA profiles obtained from the same sample

Meester, R. W. J., Zoete, J., Sjerps, M. & Cator, E., 2014, In : International Journal of Legal Medicine. 128, p. 897-904

Research output: Contribution to JournalArticleAcademicpeer-review

DNA
Crime
Berlin
Fathers
Tissue Donors

The inverse problem for Ellis-Gohberg orthogonal matrix functions

Kaashoek, M. A. & van Schagen, F., 2014, In : Integral Equations and Operator Theory. 80, 4, p. 527-555

Research output: Contribution to JournalArticleAcademicpeer-review

Orthogonal matrix
Orthogonal Functions
Matrix Function
Inverse Problem
Scalar

The Ising magnetization exponent on Z2 is 1/15

Camia, F., Garban, C. & Newman, C. M., 2014, In : Probability Theory and Related Fields. 160, p. 175-187

Research output: Contribution to JournalArticleAcademicpeer-review

Ising
Magnetization
Exponent
Triangular Lattice
Critical Exponents

The laminations of a crystal near an anti-continuum limit

Knibbeler, V., Mramor, B. & Rink, B. W., 2014, In : Nonlinearity. 27, p. 927-952

Research output: Contribution to JournalArticleAcademicpeer-review

Lamination
Continuum Limit
laminates
Crystal
Twist Map

The predicament of the African wild dog, Lycaon pictus, is less precarious than claimed

Koetsier, T. & Jongeling, T. B., 2014, In : African Journal of Ecology . 52, p. 466–470 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

kleptoparasitism
energy budget
expenditure
food
dog

The Transition from Formula-Centered to Concept-Centered Mathematics: Bolzano's Purely Analytic Proof as a Case Study

Loeb, I. & Roski, S. P., 2014, In : Philosophia Scientiae. 18, 1, p. 113-131

Research output: Contribution to JournalArticleAcademicpeer-review

The VICI project "Long "Range Stochastics Dynamics

Meester, R. W. J., 2014, In : Nieuw archief voor de wiskunde. 15, p. 198-207

Research output: Contribution to JournalArticleAcademicpeer-review

Towards Transfinite Type Theory: Rereading Tarski's Wahrheitsbegriff

Loeb, I., 2014, In : Synthese. 191, 10, p. 2281-2299

Research output: Contribution to JournalArticleAcademicpeer-review

language
universalism
edition
Rereading
Language

Understanding bistability in yeast glycolysis using general properties of metabolic pathways.

Planque, R., Bruggeman, F. J., Teusink, B. & Hulshof, J., 2014, In : Mathematical Biosciences. 7492, p. 33-42

Research output: Contribution to JournalArticleAcademicpeer-review

Glycolysis
Bistability
glycolysis
Metabolic Networks and Pathways
Yeast

Uniting model theory and the universalist tradition of logic: Carnap's early axiomatics

Loeb, I., 2014, In : Synthese. 191, 12, p. 2815-2833

Research output: Contribution to JournalArticleAcademicpeer-review

model theory
language
theory formation
Model Theory
Logic
2013

(In-)Stability of singular equivariant solutions to the Landau-Lifshitz-Gilbert equation

van den Berg, G. J. B. & Williams, J. F., 2013, In : European Journal of Applied Mathematics. 24, p. 921-948

Research output: Contribution to JournalArticleAcademicpeer-review

Landau-Lifshitz Equation
Equivariant
Blow-up Solution
Ferromagnet
Harmonic Maps

A dichotomy theorem for minimizers of monotone recurrence relations

Mramor, B. & Rink, B. W., 2013, In : Ergodic theory and dynamical systems. 34 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Global Minimizer
Dichotomy
Recurrence relation
Minimizer
Monotone

Altered microRNA expression associated with chromosomal changes contributes to cervical carcinogenesis

Wilting, S. M., Snijders, P. J. F., Verlaat, W., Jaspers, A., van de Wiel, M. A., van Wieringen, W. N., Meijer, G. A., Kenter, G. G., Yi, Y., le Sage, C., Agami, R., Meijer, C. J. L. M. & Steenbergen, R. D. M., 2013, In : Oncogene. 32, p. 106-116

Research output: Contribution to JournalArticleAcademicpeer-review

MicroRNAs
Carcinogenesis
Squamous Cell Carcinoma
Uterine Cervical Neoplasms
Chromosomal Instability

Amplified Hopf bifurcations in feed-forward networks

Rink, B. W. & Sanders, J. A., 2013, In : SIAM Journal on Applied Dynamical Systems. 12, 2, p. 1135-1157

Research output: Contribution to JournalArticleAcademicpeer-review

Feedforward Networks
Hopf bifurcation
Hopf Bifurcation
Dynamical systems
Feedforward

Analysis of a two-layered network with correlated queues by means of the Power-Series Algorithm

Dorsman, J. L., van der Mei, R. D. & Vlasiou, M., 2013, In : Performance Evaluation. 70, p. 1072-1089

Research output: Contribution to JournalArticleAcademicpeer-review

Power series
Queue
Telecommunication traffic
Queue Length
Traffic

Analysis of small-sample clinical genomics studies using multi-parameter shrinkage: application to high-throughput RNA interference screening

van de Wiel, M., Menezes, R., van Olst, E. & van Beusechem, V. W., 2013, In : BMC Medical Genomics. 6, suppl 2, S1.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Reverse Genetics
Bayes Theorem
Statistical Models
Drug Discovery
Genomics

An empirical goodness-of-fit test for multivariate distributions

Mc Assey, M. P., 2013, In : Journal of Applied Statistics. 40, 5, p. 1120-1131 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Multivariate Distribution
Goodness of Fit Test
Mahalanobis Distance
Multivariate Models
Probability Model

A signature-based approach to comparisons among mulitple systems

Hollander, M., McAssey, M. P. & Samaniego, F. J., 2013, In : Journal of the Indian Statistical Association.

Research output: Contribution to JournalArticleAcademic