Research Output 1989 2020

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2013

Analysis of small-sample clinical genomics studies using multi-parameter shrinkage: application to high-throughput RNA interference screening

van de Wiel, M., Menezes, R., van Olst, E. & van Beusechem, V. W., 2013, In : BMC Medical Genomics. 6, suppl 2, S1.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Reverse Genetics
Bayes Theorem
Statistical Models
Drug Discovery
Genomics

An empirical goodness-of-fit test for multivariate distributions

Mc Assey, M. P., 2013, In : Journal of Applied Statistics. 40, 5, p. 1120-1131 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Multivariate Distribution
Goodness of Fit Test
Mahalanobis Distance
Multivariate Models
Probability Model

A signature-based approach to comparisons among mulitple systems

Hollander, M., McAssey, M. P. & Samaniego, F. J., 2013, In : Journal of the Indian Statistical Association.

Research output: Contribution to JournalArticleAcademic

A simple index rule for efficient traffic splitting over parallel wireless networks with partial information

Bosman, J. W., Hoekstra, G., van der Mei, R. D. & Bhulai, S., 2013, In : Performance Evaluation. 70, 10, p. 889-899

Research output: Contribution to JournalArticleAcademicpeer-review

Partial Information
Wireless Networks
Wireless networks
Traffic
Network performance

Asymptotics of hybrid fluid queues with Levy input.

Debicki, K., Sierpinska, B. & Zwart, A. P., 2013, In : Journal of Applied Probability. 50, p. 103-113

Research output: Contribution to JournalArticleAcademicpeer-review

Fluid Queue
Lévy Process
Jump
Integrated
Queue

Asymptotics of the smallest singular value of a class of Toeplitz matrices and related rank one perturbations.

Ran, A. C. M. & Rabe, H., 2013, In : Integral Equations and Operator Theory. 77, p. 385-396

Research output: Contribution to JournalArticleAcademicpeer-review

Rank One Perturbation
Toeplitz matrix
Square matrix
Singular Values
Class

Bayesian analysis of RNA sequencing data by estimating multiple shrinkage priors

van de Wiel, M. A., Leday, G. G. R., Pardo, L. M., Rue, H., van der Vaart, A. W. & van Wieringen, W. N., 2013, In : Biostatistics. 14, 1, p. 113-128

Research output: Contribution to JournalArticleAcademicpeer-review

Bayesian Analysis
Shrinkage
Sequencing
Count
Design Effect

Bayesian recovery of the initial condition for the heat equation

Knapik, B. T., van der Vaart, A. W. & van Zanten, J. H., 2013, In : Communications in Statistics, Theory and Methods. 42, 7, p. 1294-1313

Research output: Contribution to JournalArticleAcademicpeer-review

File
Heat Equation
Smoothness
Initial conditions
Recovery
Coverage

Beilinson's Hodge conjecture for smooth varieties

de Jeu, R. M. H. & Lewis, J. D., 2013, In : Journal of K-Theory. 11, 2, p. 243-282 40 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Projective Variety

BK-type inequalities and generalized random-cluster representations

van den Berg, J. & Gandolfi, A., 2013, In : Probability Theory and Related Fields. 157, p. 157-181

Research output: Contribution to JournalArticleAcademicpeer-review

Gibbs Measure
Folding
Ising
Ising Model
Probability Distribution

Braided connecting orbits in parabolic equations via computational homology

van den Berg, G. J. B., Day, S. L. & van der Vorst, R. C. A. M., 2013, In : Journal of Differential Equations. 255, p. 1086-1108

Research output: Contribution to JournalArticleAcademicpeer-review

Connecting Orbits
Stationary Solutions
Parabolic Equation
Homology
Orbits

CD98 marks a subpopulation of head and neck squamous cell carcinoma cells with stem cell properties

de Kemp, S. R., Brink, A., Stigter-van Walsum, M., Damen, J. M. A., Rustenburg, F., Wu, T., van Wieringen, W. N., Schuurhuis, G. J., Braakhuis, B. J. M., Slijper, M. & Brakenhoff, R. H., 2013, In : Stem Cell Research. 10, 3, p. 477-488

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Neoplastic Stem Cells
Stem Cells
Epithelial Cells
Treatment Failure
Membrane Proteins

Coordinating Unspecified Living Kidney Donation and Transplantation Across the Blood-Type Barrier in Kidney Exchange

Glorie, K. M., De Klerk, M., Wagelmans, A. P. M., Van de Klundert, J. J., Zuidema, W. C., Claas, F. H. J. & Weimar, W., 2013, In : Transplantation.

Research output: Contribution to JournalArticleAcademicpeer-review

Kidney Transplantation
Tissue Donors
Kidney
Transplantation
Transplants

Corrected phase-type approximations of heavy-tailed risk models using perturbation analysis.

Vatamidou, E., Adan, I. J. B. F., Vlasiou, M. & Zwart, A. P., 2013, In : Insurance Mathematics & Economics. 53, p. 366-378

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Perturbation Analysis
Model Analysis
Approximation
Performance Measures
Series Expansion

Dimension (in)equalities and Holder continuous curves in fractal percolation

Joosten, M. T., Broman, E. I., Camia, F. & Meester, R. W. J., Sep 2013, In : Journal of Theoretical Probability. 26, 3, p. 836-855 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Fractal
Equality
Curve
Connected Components
Two Dimensions

Distributed State Estimation with Communication of Observations.

Ran, A. C. M. & van Schuppen, J. H., 2013, In : Linear Algebra and its Applications. 439, p. 600-612

Research output: Contribution to JournalArticleAcademicpeer-review

Distributed Estimation
State Estimation
State estimation
Covariance matrix
Linear Combination

DNA copy number profiling reveals extensive genomic loss in hereditary BRCA1 and BRCA2 ovarian carcinomas

Kamieniak, M. M., Munoz-Repeto, I., Rico, D., Osorio, A., Urioste, M., Garcia-Donas, J., Hernando, S., Robles-Diaz, L., Ramon, Y. C., Cazorla, A., Saez, R., Garcia-Bueno, J. M., Domingo, S., Borrego, S., Palacios, J., van de Wiel, M., Ylstra, B., Benitez, J. & Garcia, M. J., 2013, In : British Journal of Cancer. 108, 8, p. 1732-1742

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Carcinoma
DNA
Neoplasms
Carcinogenesis
Mutation

Doing More with Less: A Client-Centred Approach to Healthcare Logistics in a Nursing Home Setting

Moeke, D. & Verkooijen, L., 2013, In : Journal of Social Intervention. 22, 2, p. 167-187

Research output: Contribution to JournalArticleAcademicpeer-review

nursing home
logistics
costs
home care
empirical research

Ellis-Gohberg identities for certain orthogonal functions II: algebraic setting and asymmetric versions

Kaashoek, M. A. & van Schagen, F., 2013, In : Mathematical Proceedings of the Royal Irish Academy. 113A, 2, p. 107-129

Research output: Contribution to JournalArticleAcademicpeer-review

Entropy in Information Theory

Geiger, C. B., Kubin, G., Temmel, C. & Woess, W., 2013, In : TU Graz Research.

Research output: Contribution to JournalArticlePopular

Estimating the period of a cyclic non-homogeneous Poisson process

Belitser, E. N., Serra, P. & van Zanten, H., 2013, In : Scandinavian Journal of Statistics. 40, p. 204-218

Research output: Contribution to JournalArticleAcademicpeer-review

Non-homogeneous Poisson Process
Intensity Function
Call Centres
Estimator
Nuisance Parameter

Estimation of mutation probabilities for autosomal STR markers

Slooten, K. & Ricciardi, F., May 2013, In : Forensic Science International-Genetics. 7, 3, p. 337-344 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Mutation
Mutation Rate
Forensic Genetics
Genotype
Annual Reports

Evaluating extraordinarily large requests in a revenue management network

Haensel, A. & Koole, G. M., 2013, In : Journal of Revenue and Pricing Management. 12, 4, p. 320-338

Research output: Contribution to JournalArticleAcademicpeer-review

Resources
Revenue management
Revenue
Evaluation method
Evaluation

Existence of solutions to the diffusive VSC model

Hulshof, J., Nolet, R. W. & Prokert, G., 2013, In : SIAM Journal on Mathematical Analysis. 45, 2, p. 700-727 28 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Vesicles
Existence of Solutions
Cells
Cell Wall
Hölder Space

Exploration of the spontaneous fluctuating activity of single enzyme molecules

Schwabe, A., Maarleveld, T. R. & Bruggeman, F. J., 2013, In : FEBS Letters. 587, 17, p. 2744-2752

Research output: Contribution to JournalArticleAcademicpeer-review

Molecules
Enzymes
Enzyme activity
Enzyme kinetics
Transcription

Expression signature in peripheral blood cells for molecular diagnosis of head and neck squamous cell carcinoma

Braakhuis, B. J. M., Graveland, A. P., Dijk, F., Ylstra, B., van Wieringen, W. N., Leemans, C. R. & Brakenhoff, R. H., 2013, In : Oral Diseases. 19, 5, p. 452-455

Research output: Contribution to JournalArticleAcademicpeer-review

Blood Cells
Nuclear Family
Neck
Biomarkers
Eukaryotic Initiation Factor-2

Gene network requirements for regulation of metabolic gene expression to a desired state

Berkhout, J., Teusink, B. & Bruggeman, F. J., 2013, In : Scientific Reports. 3, p. 1417

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Gene Expression Regulation
Galactose
Metabolic Networks and Pathways
Noise

General power and sample size calculations for high-dimensional genomic data

van Iterson, M., van de Wiel, M., Boer, J. M. & Menezes, R., 2013, In : Statistical Applications in Genetics and Molecular Biology. 12, 4, p. 449-467

Research output: Contribution to JournalArticleAcademicpeer-review

Sample Size Calculation
Microarrays
Sample Size
Genomics
Effect Size

How biochemical constraints of cellular growth shape evolutionary adaptations in metabolism

Berkhout, J., Bosdriesz, E., Nikerel, E., Molenaar, D., de Ridder, D., Teusink, B. & Bruggeman, F. J., 2013, In : Genetics. 194, 2, p. 505-512

Research output: Contribution to JournalArticleAcademicpeer-review

Identification of Lethal microRNAs Specific for Head and Neck Cancer

van der Plas, M., de Kemp, S. R., de Maaker, M., van Wieringen, W. N., Ylstra, B., Agami, R., Cerisoli, F., Leemans, C. R., Braakhuis, B. J. M. & Brakenhoff, R. H., 2013, In : Clinical Cancer Research. 19, 20, p. 5647-5657

Research output: Contribution to JournalArticleAcademicpeer-review

Head and Neck Neoplasms
MicroRNAs
Ataxia Telangiectasia
Gene Expression Profiling
Neoplasms

Iso-elasticity and weighted α-fairness.

Borst, S., Walton, N. & Zwart, A. P., 2013, In : Performance Evaluation. 70, p. 995-1000

Research output: Contribution to JournalArticleAcademicpeer-review

Fairness
Utility Function
Elasticity
Bandwidth
Maximise

Jordan forms of real and complex matrices under rank one perturbations.

Ran, A. C. M., Mehl, C., Mehrmann, V. & Rodman, L., 2013, In : Operators and Matrices. 7, p. 381-398

Research output: Contribution to JournalArticleAcademicpeer-review

Rank One Perturbation
Jordan Form
Eigenvalue
Genericity
Multiplicity

Local symplectic field theory

Fabert, O., 2013, In : International Journal of Mathematics. 24, 5, 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Transversality
Field Theory
Symplectic Manifold
Algebraic Structure
Cover

Markdown policies for optimizing revenue towards optimal pricing in retail

Meijer, R., Bhulai, S. & Pieffers, M., 2013, In : Journal of Business and Retail Management Research. 8, 1, p. 42-52

Research output: Contribution to JournalArticleAcademicpeer-review

Mechanistic explanations and models in molecular systems biology

Boogerd, F. C., Bruggeman, F. J. & Richardson, R. C., 2013, In : Foundations of Science. 18, p. 725-744

Research output: Contribution to JournalArticleAcademicpeer-review

Systems Biology
Mechanistic Explanation
Mathematical Model
Articulation
Modeling

Methotrexate Normalizes Up-Regulated Folate Pathway Genes in Rheumatoid Arthritis

Blits, M., Jansen, G., Assaraf, Y. G., van de Wiel, M., Lems, W. F., Nurmohamed, M. T., van Schaardenburg, D., Voskuyl, A. E., Wolbink, G. J., Vosslamber, S. & Verweij, C. L., 2013, In : Arthritis & Rheumatism. 65, 11, p. 2791-2802

Research output: Contribution to JournalArticleAcademicpeer-review

Folic Acid
Methotrexate
Rheumatoid Arthritis
Genes
Blood Cells

Modeling Association Between Dna Copy Number and Gene Expression with Constrained Piecewise Linear Regression Splines

Leday, G. G. R., van der Vaart, A. W., van Wieringen, W. N. & van de Wiel, M., 2013, In : The Annals of Applied Statistics. 7, 2, p. 823-845

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Regression Splines
Linear regression
Gene expression
Piecewise Linear
Splines

Modeling the DNA copy number aberration patterns in observational high-throughput cancer data

van Wieringen, W. N., Ros, B. P. & Wilting, S. M., 2013, In : Statistical Applications in Genetics and Molecular Biology. 12, 2, p. 143-174

Research output: Contribution to JournalArticleAcademicpeer-review

Aberrations
Aberration
High Throughput
Cancer
DNA

On a class of matrix polynomial equations

Kaashoek, M. A. & Lerer, L., 2013, In : Linear Algebra and its Applications. 439, 3, p. 613-620

Research output: Contribution to JournalArticleAcademicpeer-review

Orthogonal Matrix Polynomials
Matrix Polynomial
Polynomial equation
Matrix Function
Matrix Equation

On properties of the algorithm for pursuing a drifting quantile

Belitser, E. N. & Serra, P., 2013, In : Automation and Remote Control. 74, p. 613-627

Research output: Contribution to JournalArticleAcademicpeer-review

Optimal pricing in retail: a Cox regression approach

Meijer, R. & Bhulai, S., 2013, In : International Journal of Retail and Distribution Management. 41, 4, p. 311-320

Research output: Contribution to JournalArticleAcademicpeer-review

Retail
Optimal pricing
Retailers
Design methodology
Dynamic pricing

Optimal resource allocation in survey designs

Calinescu, I. M., Bhulai, S. & Schouten, J. G., 2013, In : European Journal of Operational Research. 226, 1, p. 115-121

Research output: Contribution to JournalArticleAcademicpeer-review

Survey Design
Optimal Allocation
Resource Allocation
Resource allocation
Resources

Performance indicators for call centers with impatience

Jouini, O., Koole, G. M. & Roubos, A., 2013, In : IIE Transactions. 45, 3, p. 341-354

Research output: Contribution to JournalArticleAcademicpeer-review

Phase-locking of epileptic spikes to ongoing delta oscillations in non-convulsive status epilepticus

Hindriks, R., Meijer, H. G. E., van Gils, S. A. & van Putten, M. J. A. M., 2013, In : Frontiers in Systems Neuroscience. 7, 111.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

PLRS: a flexible tool for the joint analysis of DNA copy number and mRNA expression data

Leday, G. G. R. & van de Wiel, M., 2013, In : Bioinformatics. 29, 8, p. 1081-1082

Research output: Contribution to JournalArticleAcademicpeer-review

Messenger RNA
DNA
Genes
Gene Dosage
Atlases

Probabilistic strategies for familial DNA searching

Meester, R. W. J. & Slooten, K., 2013, In : Journal of the Royal Statistical Society. Series B. Statistical Methodology.

Research output: Contribution to JournalArticleAcademicpeer-review

Prior Probability
Posterior Probability
Likelihood Ratio
False Positive
Strategy

Rank one perturbations of H-positive real matrices.

Ran, A. C. M., Fourie, J. H., Groenewald, G. J. & Janse van Rensburg, D. B., 2013, In : Linear Algebra and its Applications. 439, p. 653-674

Research output: Contribution to JournalArticleAcademicpeer-review

Rank One Perturbation
Jordan Block
Eigenvalue
Structured Perturbations
Jordan Canonical Form

Regional differences in gene expression and promoter usage in aged human brains

Pardo, L. M., Rizzu, P., Francescatto, M., Vitezic, M., Leday, G. G. R., Simon Sanchez, J., Khamis, A., Takahashi, H., van de Berg, W. D. J., Medvedeva, Y. A., van de Wiel, M., Daub, C. O., Carninci, P. & Heutink, P., 2013, In : Neurobiology of Aging. 34, 7, p. 1825-1836

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Methylation
Gene Expression
Brain
Genes
Hippocampus

Rigorous numerics in floquet theory: Computing stable and unstable bundles of periodic orbits

Castelli, R. & Lessard, J. P., 2013, In : SIAM Journal on Applied Dynamical Systems. 12, 1, p. 204-245 42 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Floquet Theory
Numerics
Periodic Orbits
Normal Form
Fundamental Matrix

Scaling limits via excursion theory: Interplay between Crump-Mode-Jagers branching processes and Processor-Sharing queues.

Lambert, A., Simatos, F. & Zwart, A. P., 2013, In : Annals of Applied Probability. 23, p. 2357-2381

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Excursion Theory
Processor Sharing
Scaling Limit
Branching process
Queue