Research Output 1995 2019

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2019

A combined cellomics and proteomics approach to uncover neuronal pathways to psychiatric disorder

Rosato, M., Gebuis, T., Paliukhovich, I., Stringer, S., Sullivan, P. F., Smit, A. B. & van Kesteren, R. E., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 199-215 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Proteomics
Psychiatry
Genes
Inborn Genetic Diseases
Cytology

Data-Independent acquisition (SWATH) mass spectrometry analysis of protein content in primary neuronal cultures

Gonzalez-Lozano, M. A. & Koopmans, F., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 119-127 9 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Mass spectrometry
Mass Spectrometry
Peptides
Proteins
Proteome

Dissection of rodent brain regions: Guided free-hand slicing and dissection of frozen tissue

Spijker, S., Faliagkas, L. & Rao-Ruiz, P., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 7-19 13 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Dissection
Rodentia
Brain
Hand
Tissue

Integrated immunoprecipitation: Blue native gel electrophoresis—mass spectrometry for the identification of protein subcomplexes

van der Spek, S. J. F., Smit, A. B. & Pandya, N. J., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 85-94 10 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Immunoprecipitation
Spectrometry
Spectrum Analysis
Gels
Proteins

Neuroproteomics: The methods

Li, K. W., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 1-6 6 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Neurology
Proteome
Proteomics
Nervous System
Research

Sample preparation for proteomics analysis: Filter-aided sample preparation (FASP) and single-pot solid-phase sample preparation (SP3)

Li, K. W., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 67-73 7 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Proteomics
Gels
Experiments

TMT-MS3-Enabled proteomic quantification of human IPSC-Derived neurons

Pandya, N. J., Avila, D., Dunkley, T., Jagasia, R. & Tzouros, M., 2019, Neuroproteomics. Li, K. W. (ed.). 2nd ed. Humana Press Inc., p. 103-117 15 p. (Neuromethods; vol. 146).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Induced Pluripotent Stem Cells
Stem cells
Proteomics
Neurons
Workflow
2018

A laser microdissection–liquid chromatography–tandem mass spectrometry workflow for post-mortem analysis of brain tissue

Hondius, D. C., Hoozemans, J. J. M., Rozemuller, A. J. M., Li, K. W. & Smit, A. B., 2018, Laser Capture Microdissection: Methods and Protocols. New York: Humana Press Inc, p. 371-383 13 p. (Methods in Molecular Biology; vol. 1723).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Workflow
Mass Spectrometry
Lasers
Brain
Brain Diseases

Neuronal life after death: electrophysiologic recordings from neurons in adult human brain tissue obtained through surgical resection or postmortem

Kramvis, I., Mansvelder, H. D. & Meredith, R. M., 2018, Brain Banking. Elsevier Science B.V., p. 319-333 15 p. (Handbook of Clinical Neurology; vol. 150).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Neurons
Brain
Autopsy
Neurophysiology
Temporal Lobe
2015

Diminished vagal and/or increased sympathetic activity in Post-Traumatic Stress Disorder. pp. 1-15

Agorastos, A., Kellner, M., Baker, D. G. & Stiedl, O., 2015, Comprehensive Guide to Post-Traumatic Stress Disorder. Martin, C. R., Preedy, V. R. & Patel, V. B. (eds.). Switzerland: Springer International Publishing, p. 1-15

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Passive avoidance

Ogren, S. O. & Stiedl, O., 2015, Encyclopedia of Psychopharmacology. Stolerman, I. P. & Price, L. H. (eds.). 2nd ed. Berlin Heidelberg: Springer-Verlag, Vol. 2. p. 1220-1228 9 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

2011

A 1D-PAGE/LC-ESI Linear Ion Trap Orbitrap MS Approach

Cheng, N., van der Schors, R. C. & Smit, A. B., 2011, Neuroproteomics. Li, K. W. (ed.). New York/Heidelberg: Humana Press, p. 159-168 317 p. (Neuromethods; no. 57).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Bioinformatics Procedures for Analysis of Quantitative Proteomics

van Nierop, P. & Loos, M., 2011, Neuroproteomics. Li, K. W. (ed.). New York/Heidelberg: Humana Press, p. 275-296 317 p. (Neuromethods; no. 57).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Dissection of Rodent Brain Regions

Spijker, S., 2011, Neuroproteomics. Li, K. W. (ed.). New York/Heidelberg: Humana Press, p. 23-26 317 p. (Neuromethods; no. 57).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

High-Throughput High-Content Functional Image Analysis

Blaas, E. & van Kesteren, R. E., 2011, Neuroproteomics. Li, K. W. (ed.). New York/Heidelberg: Humana Press, p. 211-227 317 p. (Neuromethods; no. 57).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Neuroproteomics: Deciphering Brain Function and Disorders

Li, K. W., 2011, Neuroproteomics. Li, K. W. (ed.). New York/Heidelberg: Human Press, p. 3-9 317 p. (Neuromethods; no. 57).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

SDS-PAGE Immunoblot Analysis

Klemmer, P., 2011, Neuroproteomics. Li, K. W. (ed.). New York/Heidelberg: Humana Press, p. 169-180 317 p. (Neuromethods; no. 57).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

2008

Peptidomics of Neurotransmitters

Li, K. W. & Smit, A. B., 2008, Proteomics of the Nervous System. Pfeiffer (ed.). Wiley-VCH Verlag GmbH & Co, p. 179-188

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Proteomics in the Synapse

Smit, A. B. & Li, K. W., 2008, Proteomics of the Nervous system. Pfeiffer (ed.). Wiley-VCH Verlag GmbH & Co, p. 167-177

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

2002

Glial regulation of cholinergic synaptic transmission by secretion of an acetylcholine-binding protein

Smit, A. B., 2002, The tripartite synapse - Glia in synaptic transmission, ch. 16. Volterra, A., Magistretti, P. & Haydon, P. (eds.). Oxford: Oxford University press, p. 212-223 12 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Neuropilin and class 3 semaphorins in nervous system regeneration

de Winter, F., Holtmaat, A. J. G. D. & Verhaagen, J., 2002, Neuropilin: From nervous system to vascular and tumor biology. Bagnard, D. (ed.). Kluwer Academic/Plenum publishers, p. 115-139 25 p. (Advances in experimental medicine and biology; no. 515).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Semaphorins: contributors to structural stability of hippocampal networks?

Holtmaat, A. J. G. D., de Winter, F., de Wit, J., Lopes da Silva, F. H. & Verhaagen, J., 2002, Plasticity in the adult brain: From genes to neurotherapy. Hofman, M. A., Boer, G. J., Holtmaat, A. J. G. D., van Someren, E. J. W., Verhaagen, J. & Swaab, D. F. (eds.). Amsterdam: Elsevier Science BV, p. 17-38 22 p. (Progress in Brain Research; no. 138).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

The 2.7 angstrom structure of AChBP, homologue of the ligand-binding domain of the nicotinic acetylcholine receptor

Brejc, K., van Dijk, W., Smit, A. B. & Sixma, T. K., 2002, Ion channels: From atomic resolution to functional genomics. Chicester, England: John Wiley & sons Litd, p. 22-32 11 p. (Novartis Foundation Symposium; no. 245).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

2001

Local protein synthesis in invertebrate axons: from dogma to dilemma

van Minnen, J. & Syed, N. I., 2001, Cell Polarity and Subcellular RNA Localization. Richter, D. (ed.). Heidelberg: Springer-Verlag, p. 175-196 22 p. (Results and Problems in Cell Differentiation; no. 34).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

1999

Detection of released egg-laying hormones from single cerebral ganglia of the pond snail Lymnaea stagnalis by means of capillary column liquid chromatography-mass spectrometry

Li, K. W., van der Schors, R. C., Jeffery, D. & Jorgenson, J. W., 1999, Recent developments in comparative endocrinology and neurobiology. Roubos, E. W., Wendelaar Bonga, S. E., Vaudry, H. & de Loof, A. (eds.). Maastricht: Shaker Publishing B.V., p. 363-366 4 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Methods towards detection of protein synthesis in dendrites and axons

van Minnen, J. & van Kesteren, R. E., 1999, Modern Techniques in Neuroscience Research. Windhorst, U. & Johansson, H. (eds.). Heidelberg: Springer-Verlag, p. 57-88 1350 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

1998

Molecular evolution of ligand-binding specificity in the vasopressin/oxytocin receptor family

van Kesteren, R. E. & Geraerts, W. P. M., 1998, Trends in comparative endocrinology and neurobiology: from molecular to integrative biology. Vaudry, H., Tonon, M. C., Roubos, E. W. & de Loof, A. (eds.). New York, USA: New York Academy of Sciences, p. 25-34 10 p. (Ann. NY Acad. Sci.; no. 839).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review