Molecular Cell Biology

Research Output

Chelation by histidine inhibits the vacuolar sequestration of nickel in roots of the hyperaccumulator Thlaspi caerulescens

Richau, K. H., Kozhevnikova, A. D., Seregin, I. V., Vooijs, R., Koevoets, P. L. M., Smith, J. A. C., Ivanov, V. B. & Schat, H., 2009, In : New Phytologist. 183, p. 106-116

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical contamination and the ecological quality of surface water.

Baas, J. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 1603-1607

Research output: Contribution to JournalArticleAcademicpeer-review

Child development, growth and microbiota: follow-up of a randomized education trial in Uganda

Atukunda, P., Muhoozi, G. K. M., van den Broek, T. J., Kort, R., Diep, L. M., Kaaya, A. N., Iversen, P. O. & Westerberg, A. C., Jun 2019, In : Journal of global health. 9, 1, p. 1-11 11 p., 010431.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Children and populations biobanks.

Gurwitz, D., Fortier, I., Lunshof, J. E. & Knoppers, B. M., 2009, In : Science. 325, p. 818-819

Research output: Contribution to JournalArticleAcademicpeer-review

Chromatography-mass spectrometry based analysis of biologically active endogenous carboxylic acids

Kloos, D., Lingeman, H., Mayboroda, O. A., Deelder, A. M., Niessen, W. M. A. & Giera, M., 2014, In : TrAC. Trends in Analytical Chemistry. 61, p. 17-28

Research output: Contribution to JournalArticleAcademicpeer-review

Chronic exposure to chlorpyrifos reveals two modes of action in the springtail Folsomia candida.

Jager, D. T., Crommentuijn, T., van Gestel, C. A. M. & Kooijman, S. A. L. M., 2007, In : Environmental Pollution. 145, p. 452-458

Research output: Contribution to JournalArticleAcademicpeer-review

Chronic fatigue syndrome: A matter of enzyme deficiencies?

vd Steen, W. J., 2000, In : Medical Hypotheses. 54, p. 853-854 2 p.

Research output: Contribution to JournalArticleAcademic

Chronic fatique syndrome: A matter of enzyme deficiencies?

vd Steen, W. J., 2000, In : Medical Hypotheses. 54, p. 853-854

Research output: Contribution to JournalArticleAcademicpeer-review

Chronic low back pain

van Tulder, M. & Koes, R. E., 2006, In : American Family Physician. 74, 9, p. 1577-1579 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Circular dichroism spectroscopy of fluorescent proteins.

Visser, N. V., Hink, M. A., Borst, J. W., Van der Krogt, G. N. M. & Visser, A. J. W. G., 2002, In : FEBS Letters. 521, p. 31-35

Research output: Contribution to JournalArticleAcademicpeer-review

Circular spectropolarimetric sensing of chiral photosystems in decaying leaves

Patty, C. H. L., Visser, L. J. J., Ariese, F., Buma, W. J., Sparks, W. B., van Spanning, R. J. M., Röling, W. F. M. & Snik, F., 1 Mar 2017, In : Journal of Quantitative Spectroscopy and Radiative Transfer. 189, p. 303-311 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Circular spectropolarimetric sensing of higher plant and algal chloroplast structural variations

Patty, C. H. L., Ariese, F., Buma, W. J., ten Kate, I. L., van Spanning, R. J. M. & Snik, F., May 2019, In : Photosynthesis Research. 140, 2, p. 129-139 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Circular spectropolarimetric sensing of life

Patty, C. H. L., 2019, 174 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VU

Open Access
File

Circular Spectropolarimetric Sensing of Vegetation in the Field: Possibilities for the Remote Detection of Extraterrestrial Life

Patty, C. H. L., Ten Kate, I. L., Buma, W. J., Van Spanning, R. J. M., Steinbach, G., Ariese, F. & Snik, F., 3 Oct 2019, In : Astrobiology. 19, 10, p. 1221-1229 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs

Mondeel, T. D. G. A., Ivanov, O., Westerhoff, H. V., Liebermeister, W. & Barberis, M., 3 Apr 2020, In : NPJ systems biology and applications. 6, 1, p. 1-15 15 p., 8.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Climate-induced changes in estuarine predator-prey systems: a DEB approach

Freitas, V., 2011, Ipskamp Drukkers. 192 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VU

Open Access
File

Clinical Perspective on the Vaginal Microbiome

Dols, J. A. M., 2016

Research output: PhD ThesisPhD Thesis - Research external, graduation VU

Open Access
File

Close encounters of nascent polypeptides during targeting and membrane insertion in Escherichia coli

Ullers, R. S., 2005, Enschede: Febodruk BV. 157 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VU

Cluster analysis and statistical comparison of molecular community profile data.

van Verseveld, H. W. & Roling, W. F. M., 2004, Molecular Microbiological Ecology Manual. Dordrecht (The Netherlands): Kluwer Academic Publishers, p. 1-24

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Clusters of reaction rates and concentrations in protein networks such as phosphotransferase system

Hardin, H. M., Zagaris, A., Willms, A. R. & Westerhoff, H. V., 2014, In : The FEBS Journal. 281, p. 531-548

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins

May, A., Pool, R., van Dijk, E., Bijlard, J., Abeln, S., Heringa, J. & Feenstra, K. A., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 326-34 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Colonization of PAH-contaminated dredged sediment by earthworms.

Eijsackers, H. J. P., Bruggeman, J., Harmsen, J., de Kort, T. & Schakel, A. H., 2009, In : Applied Soil Ecology. 43, p. 216-225

Research output: Contribution to JournalArticleAcademicpeer-review

Color-sensitive motility and methanol release responses in Rhodobacter sphaeroides

Kort, R., Crielaard, W., Spudich, J. L. & Hellingwerf, K. J., Jun 2000, In : Journal of Bacteriology. 182, 11, p. 3017-21 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Combination toxicology of copper, zinc, and cadmium in binary mixtures: Concentration-dependent antagonistic, nonadditive, and synergistic effect on root growth in Silene vulgaris.

Sharma, S. S., Schat, H., Vooijs, R. & van Heerwaarden, L. M., 1999, In : Environmental Toxicology and Chemistry. 18, 2, p. 348-355

Research output: Contribution to JournalArticleAcademicpeer-review

Combination toxicology of copper, zinc, and cadmium in binary mixtures: concentration-dependent antagonistic, nonadditive, and synergistic effects on root growth in Silene vulgaris.

Sharma, S. S., Schat, H., Vooijs, H. & van Heerwaarden, L. M., 1999, In : Environmental Toxicology and Chemistry. 18, p. 348-355

Research output: Contribution to JournalArticleAcademicpeer-review

Combination toxicology of metal enriched soils: physiological responses of a Zn- and Cd-resistant ecotype of Silene vulgaris on polymetallic soils.

Ernst, W. H. O., Nelissen, H. J. M. & ten Bookum, W. M., 2000, In : Environmental and Experimental Botany. 43, p. 55-71 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

COMBINE archive and OMEX format: One file to share all information to reproduce a modeling project

Bergmann, F. T., Adams, R., Moodie, S., Cooper, J., Glont, M., Golebiewski, M., Hucka, M., Laibe, C., Miller, A. K., Nickerson, D. P., Olivier, B. G., Rodriguez, N., Sauro, H. M., Scharm, M., Soiland-Reyes, S., Waltemath, D., Yvon, F. & Le Novere, N., 14 Dec 2014, In : BMC Bioinformatics. 15, p. 1-9 9 p., 326.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Combined effects of CO2 concentration and enhanced UV-B radiation on Faba bean.

Tosserams, M., Visser, A., Groen, M., Kalis, G., Magendans, E. & Rozema, J., 2001, In : Plant Ecology. 154, p. 195-210

Research output: Contribution to JournalArticleAcademicpeer-review

Combining bifurcation and sensitivity analysis for ecological models: Model analysis, and the allegory of the cave

van Voorn, GAK. & Kooi, B. W., 2017, In : European Physical Journal. Special Topics. 226, 9, p. 2101-2118 18 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Combining hydrogeochemical and microbial characterization for evaluating intrinsic bioremediation at old Dutch landfills.

van Breukelen, B. M., Röling, W. F. M., Braster, M., Soeteman, A., Groen, J. & van Verseveld, H. W., 1999, p. 77-86.

Research output: Contribution to ConferenceAbstractOther research output

Comment les genes teintes les fleurs.

Mol, J. N. M., 1999, In : Biofutur. 187, p. 28-31 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Comment on the ecophysiology of the Greenland shark, Somniosus microcephalus

Kooijman, S. A. L. M., 2017, In : Polar Biology. 40, 12, p. 2429-2533 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
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Community assembly, species richness and nestedness of arbuscular myucorrhizal fungi in agricultural soils.

Verbruggen, E., van der Heijden, M. G. A., Weedon, J. T., Kowalchuk, G. A. & Roling, W. F. M., 2012, In : Molecular Ecology. 21, p. 2341-2353

Research output: Contribution to JournalArticleAcademicpeer-review

Community flux balance analysis for microbial consortia at balanced growth

Khandelwal, R. A., Olivier, B. G., Roling, W. F. M., Teusink, B. & Bruggeman, F. J., 2013, In : PLoS ONE. 8, 5

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Comparative energetics of the 5 fish classes on the basis of dynamic energy budgets.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Journal of sea research. 94, p. 19-28

Research output: Contribution to JournalArticleAcademicpeer-review

Comparative genome analysis of Lactococcus lactis indicates niche adaptation and resolves genotype/phenotype disparity

Wels, M., Siezen, R., Van Hijum, S., Kelly, W. J. & Bachmann, H., 31 Jan 2019, In : Frontiers in Microbiology. 10, January, p. 1-18 18 p., 4.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: Implications for in vivo dominance of the vaginal microbiota

Van Der Veer, C., Hertzberger, R. Y., Bruisten, S. M., Tytgat, H. L. P., Swanenburg, J., De Kat Angelino-Bart, A., Schuren, F., Molenaar, D., Reid, G., De Vries, H. & Kort, R., 29 Mar 2019, In : Microbiome. 7, 1, p. 1-14 14 p., 49.

Research output: Contribution to JournalArticleAcademicpeer-review

File

Comparative physiological energetics of Mediterranean and North Atlantic loggerhead turtles

Marn, N., Jusup, M., Catteau, S., Kooijman, S. A. L. M. & Klanjšček, T., Jan 2019, In : Journal of sea research. 143, p. 100-118 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Comparative systems biology: from bacteria to man.

Teusink, B., Westerhoff, H. V. & Bruggeman, F. J., 2010, In : Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2, p. 519-532

Research output: Contribution to JournalArticleAcademicpeer-review

Comparing autotransporter β-domain configurations for their capacity to secrete heterologous proteins to the cell surface

Jong, W. S. P., Schillemans, M., ten Hagen-Jongman, C. M., Luirink, J. & van Ulsen, P., 7 Feb 2018, In : PLoS ONE. 13, 2, e0191622.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features

Pirovano, W. A., 2010, 138 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VU

Open Access
File

Comparing the regulatory behaviour of two cooperative, reversible enzyme mechanisms

Olivier, B. G., Rohwer, J. M., Snoep, J. L. & Hofmeyr, J. H. S., Sep 2006, In : Systems Biology. 153, 5, p. 335-337 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Comparison of (bio-)transformation methods for the generation of metabolite-like compound libraries of p38α MAP kinase inhibitors using high-resolution screening.

Falck, D., Pirkolachachi, F. R., Giera, M., Honing, M., Kool, J. & Niessen, W. M. A., 2014, In : Journal of Pharmaceutical and Biomedical Analysis. 88, p. 235-244

Research output: Contribution to JournalArticleAcademicpeer-review

Comparison of energization of complex I in membrane particles from Paracoccus denitrificans

Kotlyar, A. B., Albracht, S. & van Spanning, R. J. M., 1998, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1365, p. 53-57 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Comparison of landfarming amendments to improve bioremediation of petroleum hydrocarbons in Niger Delta soils

Brown, D. M., Okoro, S., van Gils, J., van Spanning, R., Bonte, M., Hutchings, T., Linden, O., Egbuche, U., Bruun, K. B. & Smith, J. W. N., 15 Oct 2017, In : Science of the Total Environment. 596-597, p. 284-292 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Comparison of organic matter degradation in several feedstuffs in the rumen as determined with the nylon bag and gas production techniques

Cone, J. W., Van Gelder, A. H., Bachmann, H. & Hindle, V. A., 29 Mar 2002, In : Animal Feed Science and Technology. 96, 1-2, p. 55-67 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Comparison of two ecotypes of the metal hyperaccumulator Thlaspi caerulescens (J. & C. PRESL) at the transcriptional level.

Plessl, M., Rigola, D., Hassinen, V. H., Tervahauta, A., Kaerenlampi, S., Schat, H., Aarts, M. G. M. & Ernst, D., 2010, In : Protoplasma. 239, p. 81-39 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
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Comparison of two screening level risk assessment approaches for six disinfectants and pharmaceuticals.

Wezel, A. P. V. & Jager, D. T., 2002, In : Chemosphere. 47, p. 1113-1128

Research output: Contribution to JournalArticleAcademicpeer-review

Compartmentation prevents a lether turbo-explosion of glycolysis in trypanosomes.

Haanstra, J. R., van Tuijl, J. H., Kessler, P., Reijnders, W. N. M., Michels, P. A. M., Westerhoff, H. V., Parsons, M. & Bakker, B. M., 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, p. 17718-17723

Research output: Contribution to JournalArticleAcademicpeer-review