Molecular Cell Biology

Research Output 1978 2020

Filter
Conference contribution
2018

An integrated model quantitatively describing metabolism, growth and cell cycle in budding yeast

Palumbo, P., Vanoni, M., Papa, F., Busti, S., Wortel, M., Teusink, B. & Alberghina, L., 2018, Artificial Life and Evolutionary Computation - 12th Italian Workshop, WIVACE 2017, Revised Selected Papers. Springer/Verlag, p. 165-180 16 p. (Communications in Computer and Information Science; vol. 830).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Integrated Model
Cell Cycle
Metabolism
Yeast
Cells

Constraint-based models of microbial physiology: Surprisingly versatile

Teusink, B., Planqué, B., Molenaar, D. & Bruggeman, F., 1 Jan 2018, 10th International Conference on Simulation and Modelling in the Food and Bio-Industry 2018, FOODSIM 2018. Eurosis, p. 5-10 6 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

microbial physiology
Physiology
Fluxes
Microbiological Phenomena
Growth
2014

Background reduction in a young interferometer biosensor

Mulder, H. K. P., Subramaniam, V. & Kanger, J. S., 21 Jul 2014, Optical Sensors, 2014. Optical Society of America (OSA)

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Biosensors
Interferometers
Refractive index
Sensors
Glucose

Petri nets are a biologist's best friend

Bonzanni, N., Feenstra, K. A., Fokkink, W. J. & Heringa, J., 2014, Formal Methods in Macro-Biology: First International Conference, FMMB 2014, Nouméa, New Caledonia, September 22-24, 2014. Proceedings. Springer/Verlag, p. 102-116 15 p. (Lecture Notes in Computer Science; vol. 8738)( Lecture Notes in Bioinformatics book sub series (LNBI); vol. 8738).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

File
Concurrency
Petri nets
Petri Nets
Cell Differentiation
Stem Cells
2011

Lagrangian Relaxation Applied to Sparse Global Network Alignment

El-Kebir, M., Heringa, J. & Klau, G. W., 2011, Pattern Recognition in Bioinformatics: 6th IAPR International Conference on PRIB 2011, Delft, The Netherlands, November 2-4, 2011, Proceedings. Loog, M., Wessels, L., Reinders, M. J. T. & de Ridder, D. (eds.). Berlin: Springer, p. 225-236 12 p. (Lecture Notes in Computer Science; vol. 7036).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Topology
Molecular interactions
Electric network analysis
Linear programming
Proteins
2010

Parameter Tuning in Evolving Simulated Robot Controllers in the TEEM Environment

Arifin, A., Kruijne, W., Nedev, D. G. & Smit, S. K., 2010, Proceedings of BeNeLEARN 2010.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2008

A community of researchers

van Rens, L., Harms, N., van Muijlwijk-Koezen, J. E. & Beishuizen, J. J., 2008, Paper presented at ESERA. Malmö

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

2006

Exploiting metabolic and gene-expression networks for drug design.

Haanstra, J. R., van Tuijl, J. H., van Nuland, R., Bouwman, J., Albert, M. A., Michels, P. A. M., Holzhutter, H. G., Westerhoff, H. V. & Bakker, B. M., 2006, Proceedings of the 11 th international congress of parasitology. Medimond, p. 91-96

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Systems Biology and the Silicon Cell: order out of chaos.

Westerhoff, H. V., 2006, 16th European Symposium on Computer aided process engineering and 97th international symposium on process systems engineering.. Marquardt, W. & Pantelides, C. (eds.). Amsterdam: Elsevier, p. 81-93

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

2003

A Million-Fold Speed Improvement in Genomic Repeats Detection.

Romein, J. W., Heringa, J. & Bal, H. E., 2003, SC. ACM, p. 20

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2002

BDI-Modelling of Intracellular Dynamics

Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2002, Proceedings of the First International Workshop on Bioinformatics and Multi-Agent Systems, BIXMAS'02. Williams, A. B. & Decker, K. (eds.). p. 15-23

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Bioinformatics, cellular flows, and calculation.

Westerhoff, H. V., Getz, W. M., van Verseveld, H. W., Hofmeyr, J. H. S. & Snoep, J. L., 2002, Bioinformatics and Genome Analysis. p. 221-243 23 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Extended abstract: BDI-Modelling of Intracellular Dynamics

Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2002, Proceedings of the First International Joint Conference on Autonomous Agents and Multi-Agent Systems, AAMAS'02. Castelfranchi, C. & Johnson, W. L. (eds.). ACM Press, p. 465-466

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Looking into a living cell.

van Borren, M., Brady, N., Ravelsloot, J. & Westerhoff, H. V., 2002, Fluorescence spectroscopy, imaging and probes. New tools in chemical and life sciences.. Kraayenhof, R., Visser, A. J. W. G. & Gerritsen, H. C. (eds.). Heidelberg, Germany: SpringerVerlag, p. 161-172 12 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2001

Temporal Modelling of the Dynamics of Intentional Bacterial Behaviour

Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2001, Proceedings of the 4h International Workshop on Information Processing in Cells and Tissues, IPCAT 2001. Cottam, R. (ed.). p. 177-188 12 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

The photocycle movie of photoactive yellow protein from nanoseconds to seconds

Ren, Z., Perman, B., Šrajer, V., Teng, T. Y., Pradervand, C., Bourgeois, D., Schotte, F., Ursby, T., Kort, R., Wulff, M. & Moffat, K., 2001, 2001 International Conference on Computational Nanoscience - ICCN 2001. Laudon, M. & Romanowicz, B. (eds.). p. 21-24 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Proteins
Crystallography
Chromophores
Structural analysis
Laser pulses
2000

Anthocyanin modifiaction in ornamental plants

Mol, J. N. M., 2000, 2000 Years of Natural Products Research Past, Present and Future. Luijendijk, T. J. C. (ed.). Leiden: Phytoconsult, p. 163-170 8 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Identiteit van en pluriformiteit in en rondom de school. Module I & II

Miedema, S. & Bakker, C., 2000, P.C. opleiding schoolleider primair onderwijs. Deel 1: Onderwijskundig leiderschap.. van Hardeveld, G. (ed.). Zwolle/Amersfoort: Windesheim/CPS, p. 1-40 40 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1999

How genes paint flowers.

Mol, J. N. M., Grotewold, E. & Koes, R. E., 1999, Proceedings of the IX International Congress on Plant Tissue and Cell Culture. Jerusalem, p. 597-600 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

1997

Biocomplexity and the essence of the living state.

Somsen, O. J. G., van Grondelle, R. & Westerhoff, H. V., 1997, Complexity 2. p. 3-4

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

1996

Negative control by oxygen. How to perform metabolic control analysis in steady-sytate microbial cultures?

Boogerd, F. C., Pronk, AF., Snoep, J. L. & Westerhoff, H. V., 1996, BioThermoKinetics of the living cell. Westerhoff, HV., Snoep, JL., Sluse, FE., Wijker, JE. & Kholodenko, BN. (eds.). Biothermokinetics Press, p. 150-154 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1990

The use of moderately thermophilic, sulfur-oxidizing bacteria in the desulfurization of high-sulfur coals

Bos, P., Boogerd, F. C. & Kuenen, JG., 1990, First Int. Symp. on Bioprocessing of Coal. p. x-x

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1989

Removal of pyrite from coal by moderate and extreme thermophiles: evaluation of the consequences for oxygen and carbon dioxide mass transfer.

Boogerd, F. C., Bos, P., Heijnen, J. J. & Kuenen, J. C., 1989, Proceedings of the Workshop on Bioprocessing of Fossil Fuels. p. 165-181 16 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

The role of growth and maintenance in the oxidation of pyrite in batch culture by a moderately thermophilic, facultative chemolithoautotroph.

Boogerd, F. C., van Alphen, MMQ., van Anrooij, WJ., de Bruyn, JC., Bos, P. & Kuenen, JG., 1989, Proceedings of the Int. Symp. on Biohydrometallurgy . Salley, J., McCready, GL. & Wichlacz, L. (eds.). p. 735-751 16 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1982

Energy conservation during denitrification by Paracoccus denitrificans.

Boogerd, F. C., van Verseveld, H. W. & Stouthamer, A. H., 1982, Second European Bioenergetics Conference, short reports. L.B.T.M.-C.N.R.S.editeur, Villeurbanne, p. 273-274 2 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1981

Energy conservation in aerobically and anaerobically grown Paracoccus denitrificans. The role of cytochrome c oxidase.

Krab, K., van Verseveld, H. W. & Boogerd, F. C., 1981, Vectorial reactions in electron and ion transport in mitochondria and bacteria. Palmieri, F. (ed.). Elsevier, p. 115-118 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic