Research Output per year
Research Output 1978 2020
- 1 - 50 out of 964 results
- Publication Year, Title (descending)
2020
Long-term exposure of activated sludge in chemostats leads to changes in microbial communities composition and enhanced biodegradation of 4-chloroaniline and N-methylpiperazine
Poursat, B. A. J., van Spanning, R. J. M., Braster, M., Helmus, R., de Voogt, P. & Parsons, J. R., 1 Mar 2020, In : Chemosphere. 242, 125102.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Chemostats
chemostat
Sewage
Biodegradation
community composition
2019
Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S. J., Montalban-Lopez, M., De Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B. & Kuipers, O. P., 10 Jan 2019, In : BMC Evolutionary Biology. 19, 1, p. 1-15 15 p., 15.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
strength (mechanics)
glucose
mutation
chemostat
fitness
Bacterial community dynamics in lait caillé, a traditional product of spontaneous fermentation from Senegal
Groenenboom, A. E., Parker, M. E., De Vries, A., De Groot, S., Zobrist, S., Mansen, K., Milani, P., Kort, R., Smid, E. J. & Schoustra, S. E., 10 May 2019, In : PLoS ONE. 14, 5, e0215658.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Senegal
Probiotics
bacterial communities
Fermentation
probiotics
Biodegradation of metformin and its transformation product, guanylurea, by natural and exposed microbial communities
Poursat, B. A. J., van Spanning, R. J. M., Braster, M., Helmus, R., de Voogt, P. & Parsons, J. R., 30 Oct 2019, In : Ecotoxicology and Environmental Safety. 182, p. 1-10 10 p., 109414.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Chemostats
Metformin
Biodegradability
Biodegradation
Sewage
Child development, growth and microbiota: follow-up of a randomized education trial in Uganda
Atukunda, P., Muhoozi, G. K. M., van den Broek, T. J., Kort, R., Diep, L. M., Kaaya, A. N., Iversen, P. O. & Westerberg, A. C., Jun 2019, In : Journal of global health. 9, 1, p. 1-11 11 p., 010431.Research output: Contribution to Journal › Article › Academic › peer-review
Uganda
Microbiota
Child Development
Mothers
Education
Circular spectropolarimetric sensing of higher plant and algal chloroplast structural variations
Patty, C. H. L., Ariese, F., Buma, W. J., ten Kate, I. L., van Spanning, R. J. M. & Snik, F., May 2019, In : Photosynthesis Research. 140, 2, p. 129-139Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Circular spectropolarimetric sensing of life
Patty, C. H. L., 2019, 174 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Circular Spectropolarimetric Sensing of Vegetation in the Field: Possibilities for the Remote Detection of Extraterrestrial Life
Patty, C. H. L., Ten Kate, I. L., Buma, W. J., Van Spanning, R. J. M., Steinbach, G., Ariese, F. & Snik, F., 3 Oct 2019, In : Astrobiology. 19, 10, p. 1221-1229 9 p.Research output: Contribution to Journal › Article › Academic › peer-review
Exobiology
extraterrestrial life
circular polarization
vegetation
polarization
Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: Implications for in vivo dominance of the vaginal microbiota
Van Der Veer, C., Hertzberger, R. Y., Bruisten, S. M., Tytgat, H. L. P., Swanenburg, J., De Kat Angelino-Bart, A., Schuren, F., Molenaar, D., Reid, G., De Vries, H. & Kort, R., 29 Mar 2019, In : Microbiome. 7, 1, p. 1-14 14 p., 49.Research output: Contribution to Journal › Article › Academic › peer-review
File
Microbiota
Genomics
Glycogen
Glycosylation
Lactobacillus
De hygiënehypothese onder de loep
Croon, S., Rijkers, G., Budding, A., de Jong, E., Knol, E., Smits, H., Tool, B. & Kort, R., May 2019, In : Dutch Journal of Allergy, Asthma & Clinical Immunology (NTvAAKI). 19, p. 55-60 6 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Hygiene Hypothesis
Immune System
Hypersensitivity
Eczema
Immune System Diseases
Een praktische gids voor probiotica ter preventie van antibiotica-gerelateerde diarree in Nederland
Agamennone, V., Krul, C., Rijkers, G. & Kort, R., 8 Feb 2019, In : Pharmaceutisch Weekblad. 154, 6, p. 17-24 8 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Probiotics
Netherlands
Diarrhea
Anti-Bacterial Agents
Lactobacillus rhamnosus
Eighth annual conference of in VIVO planetary health: From challenges to opportunities
VIVO Planetary Health of the Worldwide Universities Network (WUN), 5 Nov 2019, In : International Journal of Environmental Research and Public Health. 16, 21, p. 1-62 62 p., 4302.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Health
Urban Renewal
Planets
Urbanization
Creativity
Genome annotation and antimicrobial properties of Bacillus toyonensis VU-DES13, isolated from the Folsomia candida gut
Agamennone, V., van Straalen, J., Brouwer, A., de Boer, T. E., Hensbergen, P. J., Zaagman, N., Braster, M., van Straalen, N. M., Roelofs, D. & Janssens, T. K. S., Mar 2019, In : Entomologia experimentalis et applicata. 167, 3, p. 269-285 17 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Folsomia candida
anti-infective properties
antibiotic resistance
genome
digestive system
Harmonizing semantic annotations for computational models in biology
Neal, M. L., König, M., Nickerson, D., Misirli, G., Kalbasi, R., Dräger, A., Atalag, K., Chelliah, V., Cooling, M. T., Cook, D. L., Crook, S., De Alba, M., Friedman, S. H., Garny, A., Gennari, J. H., Gleeson, P., Golebiewski, M., Hucka, M., Juty, N., Myers, C. & 8 others, 22 Mar 2019, In : Briefings in bioinformatics. 20, 2, p. 540-550 11 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Semantics
Research Personnel
Biota
Biological Science Disciplines
Theoretical Models
Improving Health and Wealth by Introduction of an Affordable Bacterial Starter Culture for Probiotic Yoghurt Production in Uganda
Westerik, N., Wacoo, A. P., Anyimo, E., Matovu, W., Reid, G., Kort, R. & Sybesma, W., 9 Jan 2019, In : Challenges. 10, 1Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
starter cultures
Uganda
yogurt
probiotics
entrepreneurship
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
Damiani, C., Maspero, D., Di Filippo, M., Colombo, R., Pescini, D., Graudenzi, A., Westerhoff, H. V., Alberghina, L., Vanoni, M. & Mauri, G., 28 Feb 2019, In : PLoS Computational Biology. 15, 2, p. 1-25 25 p., e1006733.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Population Model
RNA
Metabolism
cancer
Cancer
In vivo characterisation of fluorescent proteins in budding yeast
Botman, D., de Groot, D. H., Schmidt, P., Goedhart, J. & Teusink, B., 19 Feb 2019, In : Scientific Reports. 9, p. 1-14 14 p., 2234.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Saccharomycetales
Proteins
Codon
Yeasts
Saccharomyces cerevisiae
Microbial Communities in Sediments From Four Mildly Acidic Ephemeral Salt Lakes in the Yilgarn Craton (Australia) - Terrestrial Analogs to Ancient Mars
Aerts, J. W., van Spanning, R. J. M., Flahaut, J., Molenaar, D., Bland, P. A., Genge, M. J., Ehrenfreund, P. & Martins, Z., 6 May 2019, In : Frontiers in Microbiology. 10Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Modelling the variable incorporation of aromatic amino acids in the tyrocidines and analogous cyclodecapeptides
Vosloo, J. A., Snoep, J. L. & Rautenbach, M., 1 Dec 2019, In : Journal of Applied Microbiology. 127, 6, p. 1665-1676 12 p.Research output: Contribution to Journal › Article › Academic › peer-review
Tyrocidine
Aromatic Amino Acids
Peptides
Competitive Binding
Brevibacillus
Neural plasticity and adult neurogenesis: the deep biology perspective
Colangelo, A., Cirillo, G., Alberghina, L., Papa, M. & Westerhoff, H., 1 Feb 2019, In : Neural Regeneration Research. 14, 2, p. 201-205 5 p.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access
Neuronal Plasticity
Neurogenesis
Energy Metabolism
Growth Differentiation Factors
Mitochondrial Dynamics
NEW PROBIOTIC COMPOSITION FOR PREVENTION OF BACTERIAL VAGINOSIS
Kort, R. & van der Veer, C., 17 Jan 2019, 12 Jul 2018, Priority date 12 Jul 2017Research output: Patent › Academic
File
Phosphofructokinase controls the acetaldehyde-induced phase shift in isolated yeast glycolytic oscillators
Van Niekerk, D. D., Gustavsson, A. K., Mojica-Benavides, M., Adiels, C. B., Goksör, M. & Snoep, J. L., 31 Jan 2019, In : Biochemical Journal. 476, 2, p. 353-363 11 p.Research output: Contribution to Journal › Article › Academic › peer-review
Phosphofructokinases
Acetaldehyde
Melatonin
Phase shift
Yeast
Potential application of lactic acid starters in the reduction of aflatoxin contamination in fermented sorghum-millet beverages
Byakika, S., Mukisa, I. M., Wacoo, A. P., Kort, R., Byaruhanga, Y. B. & Muyanja, C., 15 Jan 2019, In : International Journal of Food Contamination. 6, 4Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Sorghum
Aflatoxins
Beverages
millets
aflatoxins
Probiotic Enrichment and Reduction of Aflatoxins in a Traditional African Maize-Based Fermented Food
Wacoo, A. P., Mukisa, I. M., Meeme, R., Byakika, S., Wendiro, D., Sybesma, W. & Kort, R., 25 Jan 2019, In : Nutrients. 11, 2Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Aflatoxins
fermented foods
Probiotics
aflatoxins
probiotics
Ranking network mechanisms by how they fit diverse experiments and deciding on E. coli's ammonium transport and assimilation network
Maeda, K., Westerhoff, H. V., Kurata, H. & Boogerd, F. C., 12 Apr 2019, In : NPJ systems biology and applications. 5, p. 1-11 11 p., 14.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Ammonium
Ammonium Compounds
Escherichia coli
Escherichia Coli
Ranking
Studying Glycolytic Oscillations in Individual Yeast Cells by Combining Fluorescence Microscopy with Microfluidics and Optical Tweezers
Gustavsson, A. K., Banaeiyan, A. A., van Niekerk, D. D., Snoep, J. L., Adiels, C. B. & Goksör, M., Mar 2019, In : Current Protocols in Cell Biology. 82, 1, p. 1-26 26 p., e70.Research output: Contribution to Journal › Article › Academic › peer-review
Optical Tweezers
Microfluidics
Fluorescence Microscopy
Yeasts
Lab-On-A-Chip Devices
Vaginal microbes in sexual health and disease
van der Veer, C., 11 Jan 2019, 285 p.Research output: PhD Thesis › PhD Thesis - Research external, graduation external › Academic
File
2018
11-Oxygenated androgen precursors are the preferred substrates for aldo-keto reductase 1C3 (AKR1C3): Implications for castration resistant prostate cancer
Barnard, M., Quanson, J. L., Mostaghel, E., Pretorius, E., Snoep, J. L. & Storbeck, K. H., Oct 2018, In : Journal of Steroid Biochemistry and Molecular Biology. 183, p. 192-201 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Castration
Androgens
Prostatic Neoplasms
Substrates
carbonyl reductase (NADPH)
A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways
Atashgahi, S., Hornung, B., Van Der Waals, M. J., Da Rocha, U. N., Hugenholtz, F., Nijsse, B., Molenaar, D., Van Spanning, R., Stams, A. J. M., Gerritse, J. & Smidt, H., 14 Mar 2018, In : Scientific Reports. 8, 1, p. 1-12 12 p., 4490.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Microbial Consortia
Benzene
Nitrates
Oxygen
Genes
Adaptation of microbial communities to emerging pollutants in chemostat systems
Poursat, B., Braster, M., Helmus, R., van Spanning, R., de Voogt, P. & Parsons, J., 18 Mar 2018, In : Abstracts of Papers - American Chemical Society. 255Research output: Contribution to Journal › Meeting Abstract › Academic
A mechanistic computational model reveals that plasticity of CD4+ T cell differentiation is a function of cytokine composition and dosage
Puniya, B. L., Todd, R. G., Mohammed, A., Brown, D. M., Barberis, M. & Helikar, T., 2 Aug 2018, In : Frontiers in Physiology. 9, AUGUST, p. 1-18 18 p., 878.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Cell Differentiation
Cytokines
T-Lymphocytes
Phenotype
Transcription Factors
A practical guide for probiotics applied to the case of antibiotic-associated diarrhea in The Netherlands
Agamennone, V., Krul, C. A. M., Rijkers, G. & Kort, R., 6 Aug 2018, In : Bmc Gastroenterology. 18, p. 1-12 12 p., 103.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Probiotics
Netherlands
Diarrhea
Anti-Bacterial Agents
Lactobacillus rhamnosus
Balance on many scales: growth and gene expression in Bacillus subtilis
Nordholt, N., 2018, 118 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
COSMIN guideline for systematic reviews of patient-reported outcome measures
Prinsen, C. A. C., Mokkink, L. B., Bouter, L. M., Alonso, J., Patrick, D. L., de Vet, H. C. W. & Terwee, C. B., 1 May 2018, In : Quality of Life Research. 27, 5, p. 1147-1157 11 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
File
Guidelines
Patient Reported Outcome Measures
Expert Testimony
Routine Diagnostic Tests
Health
Expanding the reach of probiotics through social enterprises
Reid, G., Kort, R., Alvarez, S., Bourdet-Sicard, R., Benoit, V., Cunningham, M., Saulnier, D. M., Van Hylckama Vlieg, J. E. T., Verstraelen, H. & Sybesma, W., 25 May 2018, In : Beneficial Microbes. 9, 5, p. 707-715 9 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Probiotics
Social Media
Economic Models
Prebiotics
Information Dissemination
Feasibility of a novel on-site detection method for aflatoxin in maize flour from markets and selected households in Kampala, Uganda
Wacoo, A. P., Wendiro, D., Nanyonga, S., Hawumba, J. F., Sybesma, W. & Kort, R., Aug 2018, In : Toxins. 10, 8, p. 1-12 12 p., 327.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Aflatoxins
Uganda
Flour
Zea mays
Immunosensors
Formulation and stabilization of an Arthrobacter strain with good storage stability and 4-chlorophenol-degradation activity for bioremediation
Bjerketorp, J., Röling, W. F. M., Feng, X. M., Garcia, A. H., Heipieper, H. J. & Håkansson, S., Feb 2018, In : Applied Microbiology and Biotechnology. 102, 4, p. 2031-2040 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Arthrobacter
Environmental Biodegradation
Soil
Chlorophenols
Controlled Environment
Hydrogen peroxide production by lactobacilli promotes epithelial restitution during colitis
Singh, A. K., Hertzberger, R. Y. & Knaus, U. G., Jun 2018, In : Redox Biology. 16, June, p. 11-20 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Lactobacillus
Colitis
Hydrogen Peroxide
Inflammatory Bowel Diseases
Recovery
Imaging linear and circular polarization features in leaves with complete Mueller matrix polarimetry
Patty, C. H. L., Luo, D. A., Snik, F., Ariese, F., Buma, W. J., ten Kate, I. L., van Spanning, R. J. M., Sparks, W. B., Germer, T. A., Garab, G. & Kudenov, M. W., Jun 2018, In : Biochimica et Biophysica Acta - General Subjects. 1862, 6, p. 1350-1363 14 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Circular polarization
Polarimeters
Veins
Acer
Imaging techniques
Integrative Systems Toxicology for Human Health
Sharma, R. P., 2018, 402 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Lactobacillus rhamnosus probiotic food as a tool for empowerment across the value chain in Africa
Westerik, N., Kort, R., Sybesma, W. & Reid, G., 10 Jul 2018, In : Frontiers in Microbiology. 9, JULY, p. 1-6 6 p., 1501.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access
Lactobacillus rhamnosus
Probiotics
Food
Streptococcus thermophilus
Translational Medical Research
libRCGA: a C library for real-coded genetic algorithms for rapid parameter estimation of kinetic models
Maeda, K., Boogerd, F. C. & Kurata, K., 13 Sep 2018, In : IPSJ Transactions on Bioinformatics. 11, p. 31-40 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Parameter estimation
Genetic algorithms
Kinetics
Constrained optimization
Stars
Low affinity uniporter carrier proteins can increase net substrate uptake rate by reducing efflux
Bosdriesz, E., Wortel, M. T., Haanstra, J. R., Wagner, M. J., De La Torre Cortés, P. & Teusink, B., 3 Apr 2018, In : Scientific Reports. 8, 1, p. 1-9 9 p., 5576.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Facilitated Diffusion
Facilitative Glucose Transport Proteins
Glycolysis
Saccharomyces cerevisiae
Carrier Proteins
Mens en bacterie
Kort, R., 1 Nov 2018, Ontwikkelingen in de Geneeskunde 2018 . Rotterdam: Erasmus MC, p. 70-76 7 p.Research output: Chapter in Book / Report / Conference proceeding › Chapter › Professional
File
Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats
Marozava, S., Vargas-López, R., Tian, Y., Merl-Pham, J., Braster, M., Meckenstock, R. U., Smidt, H., Röling, W. F. M. & Westerhoff, H. V., Jul 2018, In : Environmental Microbiology. 20, 7, p. 2652-2669 18 p.Research output: Contribution to Journal › Article › Academic › peer-review
Desulfitobacterium hafniense
Desulfitobacterium
Fumarates
chemostat
lactates
Microbial networks for bioremediation of chlorinated ethenes
Vargas Lopez, R., 2018, 214 p.Research output: PhD Thesis › PhD Thesis - Research VU, graduation VU › Academic
Open Access
File
Naturally fermented milk from northern Senegal: Bacterial community composition and probiotic enrichment with Lactobacillus rhamnosus
Parker, M., Zobrist, S., Donahue, C., Edick, C., Mansen, K., Nadjari, M. H. Z., Heerikhuisen, M., Sybesma, W., Molenaar, D., Diallo, A. M., Milani, P. & Kort, R., 21 Sep 2018, In : Frontiers in Microbiology. 9, September, p. 1-12 12 p., 2218.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
NET works after all? Engineering robustness through diversity
Mondeel, T. D. G. A., Astrologo, S., Zhang, Y. & Westerhoff, H. V., 2018, In : IFAC-PapersOnLine. 51, 19, p. 128-137 10 p.Research output: Contribution to Journal › Article › Academic › peer-review
Thermodynamics
Kinetics
Engineers
Planets
Transcription
Oxygen Activation and Energy Conservation by Cytochrome c Oxidase
Wikström, M., Krab, K. & Sharma, V., 14 Mar 2018, In : Chemical Reviews. 118, 5, p. 2469-2490 22 p.Research output: Contribution to Journal › Review article › Academic › peer-review
Open Access
Electron Transport Complex IV
Protons
Energy conservation
Chemical activation
Oxygen
Predictable irreversible switching between acute and chronic inflammation
Abudukelimu, A., Barberis, M., Redegeld, F. A., Sahin, N. & Westerhoff, H. V., 7 Aug 2018, In : Frontiers in Immunology. 9, AUGUST, p. 1-16 16 p., 1596.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Inflammation
Antigens
Fibroblasts
Phenotype
Antigen-Antibody Complex