Molecular Cell Physiology

Research Output 1978 2019

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Conference contribution
2014

Background reduction in a young interferometer biosensor

Mulder, H. K. P., Subramaniam, V. & Kanger, J. S., 21 Jul 2014, Optical Sensors, 2014. Optical Society of America (OSA)

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Biosensors
Interferometers
Refractive index
Sensors
Glucose
2011

Lagrangian Relaxation Applied to Sparse Global Network Alignment

El-Kebir, M., Heringa, J. & Klau, G. W., 2011, Pattern Recognition in Bioinformatics: 6th IAPR International Conference on PRIB 2011, Delft, The Netherlands, November 2-4, 2011, Proceedings. Loog, M., Wessels, L., Reinders, M. J. T. & de Ridder, D. (eds.). Berlin: Springer, p. 225-236 12 p. (Lecture Notes in Computer Science; vol. 7036).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Topology
Molecular interactions
Electric network analysis
Linear programming
Proteins
2006

Exploiting metabolic and gene-expression networks for drug design.

Haanstra, J. R., van Tuijl, J. H., van Nuland, R., Bouwman, J., Albert, M. A., Michels, P. A. M., Holzhutter, H. G., Westerhoff, H. V. & Bakker, B. M., 2006, Proceedings of the 11 th international congress of parasitology. Medimond, p. 91-96

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Systems Biology and the Silicon Cell: order out of chaos.

Westerhoff, H. V., 2006, 16th European Symposium on Computer aided process engineering and 97th international symposium on process systems engineering.. Marquardt, W. & Pantelides, C. (eds.). Amsterdam: Elsevier, p. 81-93

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

2003

A Million-Fold Speed Improvement in Genomic Repeats Detection.

Romein, J. W., Heringa, J. & Bal, H. E., 2003, SC. ACM, p. 20

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2002

BDI-Modelling of Intracellular Dynamics

Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2002, Proceedings of the First International Workshop on Bioinformatics and Multi-Agent Systems, BIXMAS'02. Williams, A. B. & Decker, K. (eds.). p. 15-23

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Bioinformatics, cellular flows, and calculation.

Westerhoff, H. V., Getz, W. M., van Verseveld, H. W., Hofmeyr, J. H. S. & Snoep, J. L., 2002, Bioinformatics and Genome Analysis. p. 221-243 23 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Extended abstract: BDI-Modelling of Intracellular Dynamics

Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2002, Proceedings of the First International Joint Conference on Autonomous Agents and Multi-Agent Systems, AAMAS'02. Castelfranchi, C. & Johnson, W. L. (eds.). ACM Press, p. 465-466

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Looking into a living cell.

van Borren, M., Brady, N., Ravelsloot, J. & Westerhoff, H. V., 2002, Fluorescence spectroscopy, imaging and probes. New tools in chemical and life sciences.. Kraayenhof, R., Visser, A. J. W. G. & Gerritsen, H. C. (eds.). Heidelberg, Germany: SpringerVerlag, p. 161-172 12 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2001

Temporal Modelling of the Dynamics of Intentional Bacterial Behaviour

Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2001, Proceedings of the 4h International Workshop on Information Processing in Cells and Tissues, IPCAT 2001. Cottam, R. (ed.). p. 177-188 12 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

The photocycle movie of photoactive yellow protein from nanoseconds to seconds

Ren, Z., Perman, B., Šrajer, V., Teng, T. Y., Pradervand, C., Bourgeois, D., Schotte, F., Ursby, T., Kort, R., Wulff, M. & Moffat, K., 2001, 2001 International Conference on Computational Nanoscience - ICCN 2001. Laudon, M. & Romanowicz, B. (eds.). p. 21-24 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Proteins
Crystallography
Chromophores
Structural analysis
Laser pulses
1997

Biocomplexity and the essence of the living state.

Somsen, O. J. G., van Grondelle, R. & Westerhoff, H. V., 1997, Complexity 2. p. 3-4

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

1996

Negative control by oxygen. How to perform metabolic control analysis in steady-sytate microbial cultures?

Boogerd, F. C., Pronk, AF., Snoep, J. L. & Westerhoff, H. V., 1996, BioThermoKinetics of the living cell. Westerhoff, HV., Snoep, JL., Sluse, FE., Wijker, JE. & Kholodenko, BN. (eds.). Biothermokinetics Press, p. 150-154 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1990

The use of moderately thermophilic, sulfur-oxidizing bacteria in the desulfurization of high-sulfur coals

Bos, P., Boogerd, F. C. & Kuenen, JG., 1990, First Int. Symp. on Bioprocessing of Coal. p. x-x

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1989

Removal of pyrite from coal by moderate and extreme thermophiles: evaluation of the consequences for oxygen and carbon dioxide mass transfer.

Boogerd, F. C., Bos, P., Heijnen, J. J. & Kuenen, J. C., 1989, Proceedings of the Workshop on Bioprocessing of Fossil Fuels. p. 165-181 16 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

The role of growth and maintenance in the oxidation of pyrite in batch culture by a moderately thermophilic, facultative chemolithoautotroph.

Boogerd, F. C., van Alphen, MMQ., van Anrooij, WJ., de Bruyn, JC., Bos, P. & Kuenen, JG., 1989, Proceedings of the Int. Symp. on Biohydrometallurgy . Salley, J., McCready, GL. & Wichlacz, L. (eds.). p. 735-751 16 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1982

Energy conservation during denitrification by Paracoccus denitrificans.

Boogerd, F. C., van Verseveld, H. W. & Stouthamer, A. H., 1982, Second European Bioenergetics Conference, short reports. L.B.T.M.-C.N.R.S.editeur, Villeurbanne, p. 273-274 2 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

1981

Energy conservation in aerobically and anaerobically grown Paracoccus denitrificans. The role of cytochrome c oxidase.

Krab, K., van Verseveld, H. W. & Boogerd, F. C., 1981, Vectorial reactions in electron and ion transport in mitochondria and bacteria. Palmieri, F. (ed.). Elsevier, p. 115-118 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic