Projects per year
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Dive into the research topics where Systems Biology is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
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Profiles
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dr. Herwig Bachmann
- Faculty of Science, Systems Biology - Assistant Professor
- AIMMS - Assistant Professor
Person: Academic
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dr. BM Bakker
- Faculty of Science, Systems Biology - Associate Professor
- AIMMS - Associate Professor
Person: Academic
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Julius Battjes
- Faculty of Science, Systems Biology - External PhD Candidate
- AIMMS - External PhD Candidate
Person: Academic
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Targeting metabolic pathways as treatment strategy in head and neck cancer
Haanstra, J. (Principal Investigator), Odendaal, C. (Project Researcher), Dalhuisen, R. (PhD candidate), Milou, H. (Project Researcher), Stigter-van Walsum, M. (Project Researcher), Poell, J. (Project Researcher), Teusink, B. (Project Researcher) & Brakenhoff, R. H. (Principal Investigator)
1/05/23 → 30/04/28
Project: Research
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EraSysApp: Integrating Modelling of Metabolism and Signalling towards an Application in Liver Cancer (Imomesic)
Haanstra, J., Teusink, B. & Olivier, B.
1/02/15 → 1/02/18
Project: Research
Research output
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Ocean Acidification Capacity Is Needed at All Levels to Develop a Multistakeholder Ocean Acidification Action Platform
Newton, J., Widdicombe, S., Isensee, K., Dupont, S., Flickinger, S., Grabb, K., Keister, E. F., Schoo, K., Kenworthy, A. & Valauri-Orton, A., Mar 2025, In: Oceanography. 38, 1, p. 1-2 2 p.Research output: Contribution to Journal › Comment / Letter to the editor › Academic
Open Access -
The IAEA Ocean Acidification International Coordination Centre Capacity Building Program: Empowering Member States to Address and Minimize the Impacts of Ocean Acidification
Dupont, S., Edworthy, C., Sánchez-Noguera, C., Metian, M., Friedrich, J., Flickinger, S., Bantelman, A., Galdino, C., Graba, F., Anghelici, O. & Hansson, L., Mar 2025, In: Oceanography. 38, 1, p. 1-3 3 p.Research output: Contribution to Journal › Comment / Letter to the editor › Academic
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Gestational hyperglycaemia impacts glucose control and insulin sensitivity in mouse offspring
Hribar, K., Fisher, J. C., Eichhorn, D., Smit, M., Kloosterhuis, N. J., Bakker, B. M., Oosterveer, M. H., Kruit, J. K. & van der Beek, E. M., 28 Feb 2025, (E-pub ahead of print) In: Scientific Reports. 15, 13 p., 7136.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
SLAM-seq reveals independent contributions of RNA processing and stability to gene expression in African trypanosomes
Luzak, V., Osses, E., Danese, A., Odendaal, C., Cosentino, R. O., Stricker, S. H., Haanstra, J. R., Erhard, F. & Siegel, T. N., 10 Feb 2025, In: Nucleic acids research. 53, 3, p. 1-16 16 p., gkae1203.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Bacterial diversity, bioactive peptides, and enhanced immunomodulatory effects in raw milk kefir made with defined starter cultures versus backslopping
Baars, T., van Esch, B., Diks, M., van Ooijen, L., Zhang, Z., Dekker, P., Boeren, S., Garssen, J., Hettinga, K. & Kort, R., May 2025, In: International Dairy Journal. 164, p. 1-9 9 p., 106202.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Courses
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Advocacy work on fossil fuel collaborations in academia
Verdonk, P. (Participant), Schaumburg, J. (Participant), Kaupa, C. (Participant), Debonne, N. (Participant), Doci, E. (Participant), Lemaire, K. (Participant), Maas, I. (Participant), Wens, M. (Participant), Ossebaard, H. (Participant), Leggett, J. (Participant), Verburg, P. H. (Participant), Pattberg, P. (Participant), Holland, M. (Participant), Iannuzzi, D. (Participant), Klaassen, P. (Participant), Kort, R. (Participant) & Blondeel, M. (Participant)
1 Jan 2023 → 15 Aug 2023Activity: Other
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Maximal growth rate requires minimal metabolic complexity
Daan de Groot (Speaker)
25 Jul 2017Activity: Lecture / Presentation › Academic
File -
A genomic approach to identifying mechanisms of dithiocarbamate toxicity in zebrafish
A.L. van Boxtel (Speaker), J.H. Kamstra (Speaker), P.H. Cenijn (Speaker), B. Pieterse (Speaker) & J. Legler (Speaker)
10 Sept 2008Activity: Lecture / Presentation › Academic
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Microarray analysis reveals an important mechanism of action of phenolic PBDEs
van Boxtel, A. L. (Speaker), Pieterse, B. (Speaker), Cenijn, P. H. (Speaker), Kamstra, J. H. (Speaker), Wagner, M. (Speaker), Marsh, G. (Speaker), Krab, K. (Speaker), Bergman, A. (Speaker), Brouwer, A. (Speaker) & Legler, J. (Speaker)
5 Aug 2008Activity: Lecture / Presentation › Academic
Prizes
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Lactic Acid Bacteria Industrial Platform (LABIP) Midterm career price for scientific excellence in industrially relevant research
Teusink, Bas (Recipient), 1 Sept 2014
Prize / Grant: Prize › Academic
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Targeting metabolic pathways as treatment strategy in head and neck cancer’
Brakenhoff, R.H. (Recipient) & Haanstra, Jurgen (Recipient), 2022
Prize / Grant: Grant › Academic
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Datasets
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Naturally Fermented Milk from Northern Senegal
Molenaar, D. (Creator), Diallo, A. M. (Contributor) & Kort, R. (Contributor), VU, 2022
DOI: 10.48338/vu01-2lt5v4, https://publication.yoda.vu.nl/full/VU01/2LT5V4.html
Dataset / Software: Dataset
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The Python Simulator for Cellular Systems: PySCeS (1.0.1)
Olivier, B. (Creator) & Rohwer, J. M. (Creator), Zenodo, 24 Feb 2022
DOI: 10.5281/zenodo.6260080, https://github.com/PySCeS/pysces/tree/1.0.1
Dataset / Software: Dataset
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Single molecule mRNA Fluorescent In Situ Hybridization combined to Immunofluorescence in S. cerevisiae: Dataset and quantification
Tutucci, E. (Creator), Singer, R. H. (Contributor) & Maekiniemi, A. (Contributor), Elsevier, 13 Apr 2020
Dataset / Software: Dataset
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Additional file 4: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Antwi, E. (Contributor), Haanstra, J. (Contributor), Ramasamy, G. (Contributor), Jensen, B. (Contributor), Droll, D. (Contributor), Rojas, F. (Contributor), Minia, I. (Contributor), Terrao, M. (Contributor), MercĂŠ, C. (Contributor), Matthews, K. (Contributor), Myler, P. (Contributor), Parsons, M. (Contributor) & Clayton, C. (Contributor), Unknown Publisher, 26 Apr 2016
DOI: 10.6084/m9.figshare.c.3636047_d8.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440323/1
Dataset / Software: Dataset
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Additional file 5: of A practical guide for probiotics applied to the case of antibiotic-associated diarrhea in The Netherlands
Agamennone, V. (Contributor), Krul, C. (Contributor), Rijkers, G. (Contributor) & Kort, R. (Contributor), Unknown Publisher, 6 Aug 2018
DOI: 10.6084/m9.figshare.6935117.v1, https://springernature.figshare.com/articles/Additional_file_5_of_A_practical_guide_for_probiotics_applied_to_the_case_of_antibiotic-associated_diarrhea_in_The_Netherlands/6935117/1
Dataset / Software: Dataset