19932008
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Research Output 1993 2008

2008

Across the inner membrane and beyond: Signal peptide-mediated protein transport via the Tat and autotransporter pathways of Escherichia coli

Jong, W. S., 2008, Amsterdam. 148 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Characterization of the evolutionarily conserved role of Escherichia coli YidC in membrane protein biogenesis

van Bloois, D. W., 2008, Amsterdam. 171 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2006

Distinct requirements for translocation of the N-tail and C-tail of the Escherichia coli inner membrane protein CyoA.

van Bloois, D. W., Haan, G. J., de Gier, J-W., Oudega, B. & Luirink, S., 2006, In : Journal of Biological Chemistry. 14, 281

Research output: Contribution to JournalArticleAcademic

Open Access
File
Escherichia coli
Membrane Proteins
Protein Subunits
Capsid Proteins
Membranes

Iron uptake in Vibrio anguillarum. Regulation, siderophore biosynthesis and transport of iron-siderophore complexes

Stork, M., 2006, 152 p.

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Molecular insight into the pathogenetic synergy between E. coli and B. fragilis in secondary peritonitis

Sijbrandi, R., 2006, 170 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Sequence-specific interactions of nascent Escherichia coli polypeptides with trigger factor and signal recognition particle.

Ullers, R. S., Houben, E. N. G., Oudega, B., Harms, N. & Luirink, S., 2006, In : Journal of Biological Chemistry. 281, 20, p. 13999-144005 7 p.

Research output: Contribution to JournalArticleAcademic

Open Access
File
Signal Recognition Particle
Escherichia coli
Protein Sorting Signals
Anchors
Peptides
2005

Characterization of an iron-regulated alpha-enolase of Bacteroides fragilis

Sijbrandi, R., den Blaauwen, T., Tame, J. R. H., Oudega, B., Luirink, S. & Otto, B. R., 2005, In : Microbes and Infection. 7, p. 9-18 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Bacteroides fragilis
Phosphopyruvate Hydratase
Iron
Plasminogen
Proteins

Close encounters of nascent polypeptides during targeting and membrane insertion in Escherichia coli

Ullers, R. S., 2005, Enschede: Febodruk BV. 157 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli

Otto, B. R., Sijbrandi, R., Luirink, S., Oudega, B., Heddle, J. G., Mizutani, K., Park, S. Y. & Tame, J. R. H., 2005, In : Journal of Biological Chemistry. 280, p. 17339-17345 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Escherichia coli Proteins
Heme
Hemoglobins
Peptide Hydrolases
Crystal structure

Early encounters of a nascent membrane protein : specificity and timing of contacts inside and outside the ribosome

Houben, E. N. G., Zarivach, R., Brunner, J., Oudega, B. & Luirink, S., 2005, In : Journal of Cell Biology. 170, p. 27-35 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Ribosomes
Membrane Proteins
Signal Recognition Particle
Peptidyl Transferases
Molecular Probes

From ribosome to membrane : sequential interactions of Escherichia coli inner membrane proteins during biogenesis

Houben, E. N. G., 2005, Enschede: Febodruk bv Enschede. 142 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Signal peptide hydrophobicity is critical for early stages in protein export by Bacillus subtilis

van Zanen, L. F., Houben, E. N. G., Meima, R. B., Tjalsma, H., Jongbloed, J. D. H., Westers, T. M., Oudega, B., Luirink, S., Dijl, J. M. & Quax, W. J., 2005, In : The FEBS Journal. 272, p. 4617-4630 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Bacilli
Hydrophobicity
Protein Sorting Signals
Bacillus subtilis
Hydrophobic and Hydrophilic Interactions

The Sec-independent function of Escherichia coli YidC is evolutionary conserved and essential

van Bloois, D. W., Nagamori, S., Koningstein, G. M., Ullers, R. S., Preuss, M., Oudega, B., Harms, N., Kaback, H. R. & Luirink, S., 2005, In : Journal of Biological Chemistry. 280, p. 12996-13003 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Escherichia coli
Thylakoid Membrane Proteins
Membranes
Assays
Protein Transport
2004

F1F0 ATP synthase subunit c is targeted by SRP to YidC in the Escherichia coli inner membrane.

van Bloois, D. W., Haan, G. J., Gier de, J. W., Oudega, B. & Luirink, S., 2004, In : FEBS Letters. 576, p. 97-100 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Escherichia coli
Membrane Proteins
Membranes
F1F0-ATP synthase

The two membrane segments of leader peptidase partition one by one into the lipid bilayer via a Sec/YidC interface.

Houben, E. N. G., ten Hagen-Jongman ten, C. M., Brunner, J., Oudega, B. & Luirink, S., 2004, In : EMBO Reports. 5, p. 970-975 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Lipid bilayers
Lipid Bilayers
Membranes
Lipids
Molecular biology

Trigger factor interacts with the signal peptide of nascent Tat substrates but does not play a critical role in tat-mediated export.

Jong, W. S., ten Hagen-Jongman ten, C. M., Genevaux, P., Brunner, J., Oudega, B. & Luirink, S., 2004, In : European Journal of Biochemistry. 271, p. 4779-4787 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Protein Sorting Signals
Arginine
Substrates
Protein Transport
Ribosomes
2003

A conserved function of YidC in the biogenesis of respiratory chain complexes.

van der Laan, M., Urbanus, M. L., ten Hagen-Jongman ten, C. M., Nouwen, N., Oudega, B., Harms, N., Driessen, A. J. M. & Luirink, S., 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, p. 5801-5806 6 p.

Research output: Contribution to JournalArticleAcademic

Inosine Monophosphate
Electron Transport
Proton-Motive Force
Capsid Proteins
Bacteriophages

Escherichia coli YidC, an evolutionary conserved facilitator of membrane protein integration.

Urbanus, M. L., 2003, Amsterdam: Thesis.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Export of bacteriocins

Oudega, B., 2003, Protein Secretion Pathways in Bacteria. Boston/Dordrecht/London: Kluwer Academic Publishers, p. 233-248 16 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Interplay of signal recognition particle and trigger factor at L23 near the nascent chain exit site on the Escherichia coli ribosome

Ullers, R. S., Houben, E. N. G., Raine, A., ten Hagen-Jongman ten, C. M., Ehrenberg, M., Brunner, J., Oudega, B., Harms, N. & Luirink, S., 2003, In : Journal of Cell Biology. 161, p. 679-684 6 p.

Research output: Contribution to JournalArticleAcademic

Open Access
File
Signal Recognition Particle
Ribosomes
Escherichia coli
Membrane Proteins
Protein Sorting Signals

Protein Targeting to the Inner Membrane

Luirink, S. & Oudega, B., 2003, Protein Secretion Pathways in Bacteria. Boston/Dordrecht/London: Kluwere Academic Publishers, p. 1-21 21 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Signal recognition particle (SRP)- mediated targeting and Sec-dependent translocation of an extracellular E. coli protein.

Sijbrandi, R., Urbanus, M. L., ten Hagen-Jongman ten, C. M., Bernstein, H. D., Oudega, B., Otto, B. R. & Luirink, S., 2003, In : Journal of Biological Chemistry. 278, p. 4654-4659 6 p.

Research output: Contribution to JournalArticleAcademic

Open Access
File
Signal Recognition Particle
Escherichia coli Proteins
Hemoglobins
Peptide Hydrolases
Membranes
2002

Characterization and crystallization of a novel hemoglobinase from pathogenic Escherichia coli.

Tame, J. R. H., van Dooren, S. J. M., Oudega, B. & Otto, B. R., 2002, In : Acta Crystallographica Section D. Biological Crystallography. D58, p. 843-845 2 p.

Research output: Contribution to JournalArticleAcademic

Escherichia coli hemoglobin protease autotransporter contributes to synergistic abscess formation and heme-dependent growth of Bacteroides fragilis.

Otto, B. R., van Dooren, S. J. M., Dozois, C. M., Luirink, S. & Oudega, B., 2002, In : Infection and Immunity. 70, p. 5-10 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Bacteroides fragilis
Heme
Abscess
Intraabdominal Infections
Hemoglobins

Targeting, isertion and localization of E. coli YidC.

Urbanus, M. L., Froderberg, L., Drew, D., Bjork, P., de Gier, J-W., Brunner, J., Oudega, B. & Luirink, S., 2002, In : Journal of Biological Chemistry. 277, p. 12718-12723 5 p.

Research output: Contribution to JournalArticleAcademic

Open Access
File
Escherichia coli
Membrane Proteins
Signal Recognition Particle
Poles
Membranes

Type IV fimbriae of Xanthomonas hyacinthi: characterization and application for the detection of yellow disease in hyacinths

van Doorn, J., 2002

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

YidC and SecY mediate membrane insertion of a Type I transmembrane domain.

Houben, E. N. G., Urbanus, M. L., Van der laan, M., ten Hagen-Jongman ten, C. M., Driessen, A. J. M., Brunner, J., Oudega, B. & Luirink, S., 2002, In : Journal of Biological Chemistry. 277, p. 35880-35886 6 p.

Research output: Contribution to JournalArticleAcademic

Open Access
File
Membrane Proteins
Membranes
Escherichia coli
Lipids
Ribosomes
2001

Analysis of the type IV fimbrial-subunit gene fimA of Xanthomonas: application in PCR-mediated detection of yellow disease in hyacinths.

van Doorn, J., Hollinger, T. & Oudega, B., 2001, In : Applied and Environmental Microbiology. 67, p. 598-607 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Biosynthesis of K88 fimbriae in Escherichia coli: interaction of tip-subunit FaeC with the periplasmic chaperone FaeE and the outer membrane usher FaeD.

Mol, O., Oudhuis, W. C., Oud, R. P. C., Sijbrandi, R., Luirink, S., Harms, N. & Oudega, B., 2001, In : Journal of Molecular Microbiology and Biotechnology. 3, p. 135-142 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Chaperones in secretion pathways of Escherichia coli

Harms, N., Luirink, S. & Oudega, B., 2001, Molecular chaperones in the cell (Frontiers in Molecular Biology). Lund, ED. P. A. (ed.). Oxford University press, 25 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Purification of the autotransporter protein Hbp of Escherichia coli.

van Dooren, S. J. M., Tame, J. R. H., Luirink, S., Oudega, B. & Otto, B. R., 2001, In : FEMS Microbiology Letters. 205, p. 147-150 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Hemoglobins
Peptide Hydrolases
Escherichia coli
Proteins
Heme

Sec-dependent membrane insertion: sequentail interaction of nascent FtsQ with SecY and YidC.

Urbanus, M. L., Scottie, P. A., Froderberg, L., Saaf, A., de Gier, J-W., Brunner, J., Samulelson, T., Dalbey, R. E., Oudega, B. & Luirink, S., 2001, In : EMBO Reports. 2, p. 524-529 5 p.

Research output: Contribution to JournalArticleAcademic

The early interaction of the outer membrane protein PhoE with the periplasmic chaperone Skp occurs at the cytoplasmic membrane.

Harms, N., Koningstein, G., Dontje, W., Muller, M., Oudega, B., Luirink, S. & Cock, H., 2001, In : Journal of Biological Chemistry. 276, p. 18804-18811 7 p.

Research output: Contribution to JournalArticleAcademic

Open Access
File
Membrane Proteins
Cell Membrane
Membranes
Proteins
Tetrahydrofolate Dehydrogenase
2000

Anionic phospholipids are involed in membrane association of the recognition particle receptor FtsY and stimulate its GTPase activity.

de Leeuw, E. P. H., te Kaat, K., Moser, C., Menestrina, G., Demel, R., Kruyff, B., Oudega, B., Luirink, S. & Sinning, I., 2000, In : EMBO Journal. 19, p. 531-541

Research output: Contribution to JournalArticleAcademicpeer-review

Functional analysis of Escherichia coli FtsY in signal recognition particle mediated protein targeting

de Leeuw, E. P. H., 2000, 141 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Nascent Lep insert into the Escherichia coli inner membrane in the vicinity of YidC, SecA.

Houben, E. N. G., Scotti, P. A., Valent, Q. A., Brunner, J., de Gier, J-W., Oudega, B. & Luirink, S., 2000, In : FEBS Letters. 476, p. 229-233

Research output: Contribution to JournalArticleAcademicpeer-review

Die casting inserts
Escherichia coli
Membranes
Membrane Proteins
Signal Recognition Particle

The F4 fimbrial antigen of Escherichia coli and its receptors.

Van den Broeck, W., Cox, E., Oudega, B. & Goddeeris, B., 2000, In : Veterinary Microbiology. 71, p. 223-244

Research output: Contribution to JournalArticleAcademicpeer-review

Escherichia coli
antigens
Phenotype
Antigens
receptors

YidC, the E. coli homologue of mitochondrial Oxa 1 p, is a component of the Sec tranlocase

Scotti, P. A., Urbanus, M. L., Brunner, J., de Gier, J-W., von Heyne, G., van der Does, F. E. E., Driessen, A. J. M., Oudega, B. & Luirink, S., 2000, In : EMBO Journal. 19, p. 542-549

Research output: Contribution to JournalArticleAcademicpeer-review

1999

Development and application of pathovar-specific monoclonal antibodies that recognize the lipopolysaccharide O-antigen and the type IV fimbriae of Xanthomonas hyacinthi.

van Doorn, J., Ojanen-Reuhs, T., Hollinger, T., Reuhs, B. L., Schots, A., Boonekamp, P. M. & Oudega, B., 1999, In : Applied and Environmental Microbiology. 65, p. 4171-4180 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Epitope tagging analysis of the outer membrane folding the molecular usher FaeD involved in K88 fimbriae biosynthesis in Escherichia coli.

Harms, N., Oudhuis, W. C., Eppens, E. A., Koster, M., Luirink, S., Valent, Q. A. & Oudega, B., 1999, In : Journal of Molecular Microbiology and Biotechnology. 1, p. 319-325 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Identification of Tn10 insertions in the dsbA gene affecting Escherichia coli K-12 biofilm formation.

Genevaux, P., Bauda, P., DuBow, M. S. & Oudega, B., 1999, In : FEMS Microbiology Letters. 173, 2, p. 403-409 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Identification of Tn10 insertions in the rfaG, rfaP and galU genes involved in lipopolysaccharide core biosynthesis that affect Escherichia coli K-12 adhesion.

Genevaux, P., Bauda, P., DuBow, M. S. & Oudega, B., 1999, In : Archives of Microbiology. 172, p. 1-8 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Biosynthesis
Escherichia coli
Lipopolysaccharides
Adhesion
Genes

Molecular characterization of Escherichia coli FtsE and FtsX.

de Leeuw, E. P. H., Graham, B., Philips, G. J., ten Hagen-Jongman ten, C. M., Oudega, B. & Luirink, S., 1999, In : Molecular Microbiology. 31, p. 983-993 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Membrane Proteins
Salts
Escherichia coli
ATP-Binding Cassette Transporters
Membranes

mrp: a multigene, multifunctional locus in Bacillus subtilis with roles in resistance to cholate and to Na+ and in pH homeostasis.

Ito, M., Guffanti, A. A., Oudega, B. & Krulwich, T. A., 1999, In : Journal of Bacteriology. 181, p. 2394-2402 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

SecA is not required for SRP-mediated targeting and initial membrane insertion of a nascent inner membrane protein.

Scotti, P. A., Valent, Q. A., Manting, E. H., Urbanus, M. L., Driessen, A. J. M., Oudega, B. & Luirink, S., 1999, In : Journal of Biological Chemistry. 274, p. 29883-29888 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Signal Recognition Particle
Membrane Proteins
Membranes
Guanosine Triphosphate
Ribosomes

SRP-mediated protein targeting in Escherichia coli

Valent, Q. A., 1999, 123 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

1998

Characterisation of a haemoglobin protease secreted by pathogenic Escherichia coli.

Otto, B. R., van Dooren, S. J. M., Nuijens, J. H., Luirink, S. & Oudega, B., 1998, In : Journal of Experimental Medicine. 188, p. 1091-1103 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Hemoglobins
Peptide Hydrolases
Escherichia coli
Heme
IgA-specific serine endopeptidase

Genetic and phenotypic analysis of Escherichia coli K-12 Adhesion to inanimate surface.

Genevaux, P., 1998, 93 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation externalAcademic

The E. coli ERP and SecB targeting pathway converge at the translocon

Valent, Q. A., Scotti, P. A., High, S., de Gier, J-W. L., von Heijne, G., Lentzen, G., Wintermeyer, W., Oudega, B. & Luirink, S., 1998, In : EMBO Journal. 17, p. 2504-2512 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Signal Recognition Particle
Enterprise resource planning
Escherichia coli
Membranes
Proteins