Research Output per year
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Personal information
Systems Biologist, Research Software Engineer and Data Steward at the AIMMS institute, Vrije University Amsterdam, The Netherlands (0.6 FTE).
Education/Academic qualification
Biochemistry, PhD, University of Stellenbosch
1 Jan 2000 → 31 Dec 2004
Keywords
- QD Chemistry
- Biochemistry
- Systems Biology
- Standards
- Simulation
- QA76 Computer software
- Software Engineering
- SBML
- Python
Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.
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Network
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Selected Research Output 2002 2019
SBML Level 3 Package: Flux Balance Constraints version 2
Olivier, B. G. & Bergmann, F. T., 9 Mar 2018, In : Journal of Integrative Bioinformatics. 15, 1, p. 1-39 39 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Social Planning
Genome
Proteins
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core
Hucka, M., Bergmann, F. T., Dräger, A., Hoops, S., Keating, S. M., Le Novère, N., Myers, C. J., Olivier, B. G., Sahle, S., Schaff, J. C., Smith, L. P., Waltemath, D. & Wilkinson, D. J., 9 Mar 2018, In : Journal of Integrative Bioinformatics. 15, 1, p. 1-182 182 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Systems Biology
Language
Software
Biological Phenomena
Metabolic Networks and Pathways
Model-based quantification of metabolic interactions from dynamic microbial-community data
Hanemaaijer, M., Olivier, B. G., Röling, W. F. M., Bruggeman, F. J. & Teusink, B., 1 Mar 2017, In : PLoS ONE. 12, 3, e0173183.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Microbial Interactions
Coculture Techniques
microbial communities
Hydrogen
Wolinella
Constraint-based stochiometric modelling from single organisms to microbial communities.
Gottstein, W. G., Olivier, B. G., Bruggeman, F. J. & Teusink, B., 2016, In : Journal of the Royal Society Interface. 13, 124, 20160627.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Modeling and simulation tools: from systems biology to systems medicine
Olivier, B. G., Swat, M. J. & Mone, M. J., 2016, In : Methods in Molecular Biology. 1386, p. 441-463Research output: Contribution to Journal › Article › Academic › peer-review
Top 10 metrics for life science software good practices.
Artaza, H., Chue Hong, N., Corpas, M., Corpuz, A., Hooft, R., Jimenez, R. C., Leskosek, B., Olivier, B. G., Stourac, J., Svobodova Varekova, R., van Parys, T. & Vaughan, D., 2016, In : F1000Research. 5, ELIXIR-2000.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access