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Personal information

Biochemist & Software Engineer I am currently affiliated with the following institutions:

  • Data Manager, AIMMS, Vrije University Amsterdam, The Netherlands
  • Research Associate, Dept. Modelling of Biological Processes, Heidelberg University, Germany
  • Guest scientist, SBML Development Team, Caltech, USA


Education/Academic qualification

Biochemistry, PhD, University of Stellenbosch

1 Jan 200031 Dec 2004


  • QD Chemistry
  • Biochemistry
  • Systems Biology
  • Standards
  • Simulation
  • QA76 Computer software
  • Software Engineering
  • SBML
  • Python

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

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microbial communities Agriculture & Biology

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Selected Research Output 2002 2018

  • 32 Article
  • 1 Comment/Letter to the editor
  • 1 Review article
  • 1 PhD Thesis - Research external, graduation VU

Model-based quantification of metabolic interactions from dynamic microbial-community data

Hanemaaijer, M., Olivier, B. G., Röling, W. F. M., Bruggeman, F. J. & Teusink, B. 1 Mar 2017 In : PLoS One. 12, 3, e0173183

Research output: Contribution to journalArticle

Open Access
Microbial Interactions
Coculture Techniques
microbial communities
Open Access

Modeling and simulation tools: from systems biology to systems medicine

Olivier, B. G., Swat, M. J. & Mone, M. J. 2016 In : Methods in Molecular Biology. 1386, p. 441-463

Research output: Contribution to journalArticle

Top 10 metrics for life science software good practices.

Artaza, H., Chue Hong, N., Corpas, M., Corpuz, A., Hooft, R., Jimenez, R. C., Leskosek, B., Olivier, B. G., Stourac, J., Svobodova Varekova, R., van Parys, T. & Vaughan, D. 2016 In : F1000Research. 5, ELIXIR-2000

Research output: Contribution to journalArticle

Open Access

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints.

Olivier, B. G. & Bergmann, F. T. 2015 In : Journal of Integrative Bioinformatics. 12, p. 269 2

Research output: Contribution to journalArticle

Systems Biology
Genome Size