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Systems Biologist, Research Software Engineer and Data Steward at the AIMMS institute, Vrije University Amsterdam, The Netherlands (0.6 FTE).

Education/Academic qualification

Biochemistry, PhD, University of Stellenbosch

1 Jan 200031 Dec 2004

Keywords

  • QD Chemistry
  • Biochemistry
  • Systems Biology
  • Standards
  • Simulation
  • QA76 Computer software
  • Software Engineering
  • SBML
  • Python

Fingerprint Dive into the research topics where B.G. Olivier is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

  • 3 Similar Profiles
Genome Medicine & Life Sciences
Systems Biology Medicine & Life Sciences
Metabolic Networks and Pathways Medicine & Life Sciences
Boidae Medicine & Life Sciences
genome Earth & Environmental Sciences
Language Medicine & Life Sciences
Software Medicine & Life Sciences
Modeling Mathematics

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Research Output 2002 2019

  • 35 Article
  • 1 Comment / Letter to the editor
  • 1 Review article
  • 1 PhD Thesis - Research external, graduation VU

SBML Level 3 Package: Flux Balance Constraints version 2

Olivier, B. G. & Bergmann, F. T., 9 Mar 2018, In : Journal of Integrative Bioinformatics. 15, 1, p. 1-39 39 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Social Planning
Genome
Proteins

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core

Hucka, M., Bergmann, F. T., Dräger, A., Hoops, S., Keating, S. M., Le Novère, N., Myers, C. J., Olivier, B. G., Sahle, S., Schaff, J. C., Smith, L. P., Waltemath, D. & Wilkinson, D. J., 9 Mar 2018, In : Journal of Integrative Bioinformatics. 15, 1, p. 1-182 182 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Systems Biology
Language
Software
Biological Phenomena
Metabolic Networks and Pathways

Model-based quantification of metabolic interactions from dynamic microbial-community data

Hanemaaijer, M., Olivier, B. G., Röling, W. F. M., Bruggeman, F. J. & Teusink, B., 1 Mar 2017, In : PLoS ONE. 12, 3, e0173183.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Microbial Interactions
Coculture Techniques
microbial communities
Hydrogen
Wolinella

Constraint-based stochiometric modelling from single organisms to microbial communities.

Gottstein, W. G., Olivier, B. G., Bruggeman, F. J. & Teusink, B., 2016, In : Journal of the Royal Society Interface. 13, 124, 20160627.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Modeling and simulation tools: from systems biology to systems medicine

Olivier, B. G., Swat, M. J. & Mone, M. J., 2016, In : Methods in Molecular Biology. 1386, p. 441-463

Research output: Contribution to JournalArticleAcademicpeer-review