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Personal information

Biochemist & Software Engineer I am currently affiliated with the following institutions:

  • Data Manager, AIMMS, Vrije University Amsterdam, The Netherlands
  • Research Associate, Dept. Modelling of Biological Processes, Heidelberg University, Germany
  • Guest scientist, SBML Development Team, Caltech, USA

 

Education/Academic qualification

Biochemistry, PhD, University of Stellenbosch

1 Jan 200031 Dec 2004

Keywords

  • QD Chemistry
  • Biochemistry
  • Systems Biology
  • Standards
  • Simulation
  • QA76 Computer software
  • Software Engineering
  • SBML
  • Python

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

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Selected Research Output 2002 2018

  • 33 Article
  • 1 Comment / Letter to the editor
  • 1 Review article
  • 1 PhD Thesis - Research external, graduation VU

Model-based quantification of metabolic interactions from dynamic microbial-community data

Hanemaaijer, M., Olivier, B. G., Röling, W. F. M., Bruggeman, F. J. & Teusink, B., 1 Mar 2017, In : PLoS ONE. 12, 3, e0173183

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Microbial Interactions
Coculture Techniques
microbial communities
Hydrogen
Wolinella

Constraint-based stochiometric modelling from single organisms to microbial communities.

Gottstein, W. G., Olivier, B. G., Bruggeman, F. J. & Teusink, B., 2016, In : Journal of the Royal Society Interface. 13, 124, 20160627

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Modeling and simulation tools: from systems biology to systems medicine

Olivier, B. G., Swat, M. J. & Mone, M. J., 2016, In : Methods in Molecular Biology. 1386, p. 441-463

Research output: Contribution to JournalArticleAcademicpeer-review

Top 10 metrics for life science software good practices.

Artaza, H., Chue Hong, N., Corpas, M., Corpuz, A., Hooft, R., Jimenez, R. C., Leskosek, B., Olivier, B. G., Stourac, J., Svobodova Varekova, R., van Parys, T. & Vaughan, D., 2016, In : F1000Research. 5, ELIXIR-2000

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints.

Olivier, B. G. & Bergmann, F. T., 2015, In : Journal of Integrative Bioinformatics. 12, p. 269 2

Research output: Contribution to JournalArticleAcademicpeer-review

Systems Biology
Language
Genome
Genome Size