Eko Aditya Rifai

Master of Science, Apoteker

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I am currently a PhD student in biomolecular simulation and modelling under supervision of Dr. Daan P. Geerke. My research project is about predicting protein – ligand interactions and binding affinities by developing Linear Interaction Energy (LIE) models. 

Education/Academic qualification

Bioinformatics, Master, University of Glasgow


Apoteker, Universitas Indonesia


Pharmacy, Bachelor, Universitas Indonesia


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Research Output 2017 2019

  • 5 Article
  • 1 PhD Thesis - Research VU, graduation VU

A Comparative Linear Interaction Energy and MM/PBSA Study on SIRT1-Ligand Binding Free Energy Calculation

Rifai, E. A., van Dijk, M., Vermeulen, N. P. E., Yanuar, A. & Geerke, D. P., 11 Sep 2019, In : Journal of Chemical Information and Modeling. p. 4018-4033 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Sirtuin 1
Molecular mechanics
Free energy

Applicability and performance of linear interaction energy based binding affinity calculation

Rifai, E. A., 2019, 183 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
Open Access
Free energy
free energy
Drug Design
Molecular Dynamics Simulation

eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations

Capoferri, C. L., van Dijk, M., Rustenburg, A. S., Wassenaar, T., Kooi, D. P., Rifai, E. A., Vermeulen, N. P. E. & Geerke, D. P., 2017, In : Journal of Cheminformatics. 9, 58, p. 1-13 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Free energy

In silico screening of antimalarial from indonesian medicinal plants database to plasmepsin target

Rifai, E. A., Hayun, H. & Yanuar, A., 1 Oct 2017, In : Asian Journal of Pharmaceutical and Clinical Research. 10, Special Issue October, p. 130-133 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Medicinal Plants
Computer Simulation

Activities 2017 2017

AIMMS (Organisational unit)

Eko Aditya Rifai (Member)
2017 → …

Activity: MembershipAcademic


LPDP grant

Eko Aditya Rifai (Recipient), 2014



Shukri Award

Eko Aditya Rifai (Recipient), 26 Oct 2019


Pharmaceutical Preparations