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Research Output 1993 2019

2019

Semi-Supervised Learning using Differentiable Reasoning

van Krieken, E., Acar, E. & van Harmelen, F., 2019, (Accepted/In press) In : IFCoLog Journal of Logic and its Applications.

Research output: Contribution to JournalSpecial issue (editing)Academicpeer-review

2018

Detecting erroneous identity links on the web using network metrics

Raad, J., Beek, W., van Harmelen, F., Pernelle, N. & Saïs, F., 2018, The Semantic Web – ISWC 2018 - 17th International Semantic Web Conference, 2018, Proceedings. Suárez-Figueroa, M. C., Presutti, V., Kaffee, L-A., Simperl, E., Sabou, M., Vrandecic, D., Celino, I. & Bontcheva, K. (eds.). Springer/Verlag, p. 391-407 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11136 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Semantic Web
Thing
Metric
Community Structure
Date

Détection de liens d'identité erronés en utilisant la détection de communautés dans les graphes d'identité

Raad, J., Beek, W., Pernelle, N., Saïs, F. & Van Harmelen, F., Jul 2018, In : Ingenierie des Systemes d'Information. 23, 3-4, p. 95-118 24 p.

Research output: Contribution to JournalReview articleAcademicpeer-review

Interfacing with external heterogeneous data: RISIS Deliverable 7.4

Khalili, A., van den Besselaar, P. A. A., de Graaf, K. A., Idrissou, O. A. K. & van Harmelen, F., 2018, Amsterdam: Vrije Universtiteit.

Research output: Book / ReportReportAcademic

Network metrics for assessing the quality of entity resolution between multiple datasets

Idrissou, O. A. K., van Harmelen, F. & van den Besselaar, P. A. A., 2018, Knowledge Engineering and Knowledge Management: 21st International Conference, EKAW 2018 . Faron Zucker, C., Ghidini, C., Napoli, A. & Toussaint, Y. (eds.). Basel: Springer Nature Switzerland AG, Vol. 11313. p. 147-162 15 p. (Lecture Notes in Artificial Intelligence).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
File
Semantic Web
Innovation

Recent advances in extracting and processing rich semantics from medical texts

Denecke, K. & van Harmelen, F., 3 Aug 2018, In : Artificial Intelligence in Medicine.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

sameAs.cc: The Closure of 500M owl:sameAs Statements

Beek, W., Raad, J., Wielemaker, J. & van Harmelen, F., 2018, The Semantic Web - 15th International Conference, ESWC 2018, Proceedings. Springer/Verlag, p. 65-80 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10843 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Mints
Semantic Web
Web services
Closure
Equivalence

The 'K' in 'Semantic Web' Stands for 'Knowledge'

Beek, W. G. J., 2018, 252 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

The Lenticular Lens: Customized linking and link modification (the SMS disambiguation service): RISIS Deliverable 25.4

Idrissou, O. A. K., Khalili, A., Hoekstra, R. J., Carretta Zamborlini, V., van Harmelen, F. & van den Besselaar, P. A. A., 2018, Amsterdam: Vrije Universtiteit.

Research output: Book / ReportReportAcademic

User-centric pattern mining on knowledge graphs: An archaeological case study

Wilcke, W. X., de Boer, V., de Kleijn, M. T. M., van Harmelen, F. A. H. & Scholten, H. J., 1 Jan 2018, (Accepted/In press) In : Journal of Web Semantics.

Research output: Contribution to JournalArticleAcademicpeer-review

Pipelines
Association rules
Transparency
Data mining
Data structures
2017

Analyzing interactions on combining multiple clinical guidelines

Zamborlini, V., Da Silveira, M., Pruski, C., ten Teije, A., Geleijn, E., van der Leeden, M., Stuiver, M. & van Harmelen, F., 21 Mar 2017, In : Artificial Intelligence in Medicine.

Research output: Contribution to JournalArticleAcademicpeer-review

Reusability
Knowledge representation
Patient rehabilitation
Scalability
Health

An empirical study on how the distribution of ontologies affects reasoning on the web

Bazoobandi, H. R., Urbani, J., van Harmelen, F. & Bal, H., 2017, The Semantic Web – ISWC 2017 - 16th International Semantic Web Conference, Proceedings. Springer/Verlag, Vol. 10587 LNCS. p. 69-86 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10587 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Empirical Study
Ontology
Reasoning
Inclusion
HTML

An Ontology Model for Narrative Image Annotation in the Field of Cultural Heritage

Xu, L., Meroño-Peñuela, A., Huang, Z. & van Harmelen, F., 2017, Workshop on Humanities in the Semantic Web: Proceedings of the 2nd Workshop on Humanities in the SEmantic web (WHiSe 2017) : co-located with 16th International Semantic Web Conference (ISWC 2017). Adamou, A., Daga, E. & Isaksen, L. (eds.). CEUR, p. 117-122 6 p. (CEUR Workshop Proceedings; vol. 2104).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ontology
Semantics
Reusability
Painting
Pixels

ARIADNE: Final Report on Data Mining

Wilcke, W. X., de Boer, V., van Harmelen, F. A. H., de Kleijn, M. T. M., Wansleeben, M., Dimitropoulos, H. & Wright, H. (ed.), 2017, Ariadne. (ARIADNE; no. D16.3)

Research output: Book / ReportReportAcademic

networking
semantics
expert
infrastructure
experiment

Constructing disease-centric knowledge graphs: A case study for depression (short version)

Huang, Z., Yang, J., van Harmelen, F. & Hu, Q., 2017, Artificial Intelligence in Medicine - 16th Conference on Artificial Intelligence in Medicine, AIME 2017, Proceedings. Springer/Verlag, Vol. 10259 LNAI. p. 48-52 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10259 LNAI).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Graph in graph theory
Disorder
Query
Resources
Knowledge

Constructing Knowledge Graphs of Depression

Huang, Z., Yang, J., van Harmelen, F. & Hu, Q., 2017, Health Information Science - 6th International Conference, HIS 2017, Proceedings. Springer/Verlag, Vol. 10594 LNCS. p. 149-161 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10594 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Graph in graph theory
Medicine
Genes
Decision making
Drugs

Detecting New Evidences for Evidence-Based Medical Guidelines with Journal Filtering

Hu, Q., Huang, Z., ten Teije, A. & van Harmelen, F., 2017, Knowledge Representation for Health Care: HEC 2016 International Joint Workshop, KR4HC/ProHealth 2016, Munich, Germany, September 2, 2016, Revised Selected Papers. Riaño, D., Lenz, R. & Reichert, M. (eds.). Cham: Springer/Verlag, Vol. 10096 LNAI. p. 120-132 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10096 LNAI).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Filtering
Search engines
Health care
Updating
Recommendations

Enriching scientometrics with linked data: the SMS platform

Idrissou, O. A. K., Khalili, A., van den Besselaar, P. A. A., de Graaf, K. A., Loizou, A. & van Harmelen, F., 2017.

Research output: Contribution to ConferencePaperAcademic

Generalizing the Detection of Clinical Guideline Interactions Enhanced with LOD

Carretta Zamborlini, V., Hoekstra, R., Da Silveira, M., Pruski, C., ten Teije, A. & van Harmelen, F., 2017, Biomedical Engineering Systems and Technologies: 9th International Joint Conference, BIOSTEC 2016, Rome, Italy, February 21--23, 2016, Revised Selected Papers. Fred, A. & Gamboa, H. (eds.). Cham: Springer International Publishing Switzerland, p. 360-386 27 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Improving social research using heterogeneous data: the SMS platform

van den Besselaar, P. A. A., Khalili, A., van Harmelen, F. & de Graaf, K. A., 2017.

Research output: Contribution to ConferencePosterAcademic

Is my:sameAs the same as your:sameAs?

Idrissou, A. K., Hoekstra, R., van Harmelen, F., Khalili, A. & van den Besselaar, P., 2017, The ninth international conference on knowledge capture: k-cap 2017.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Lenses
Semantic Web
Metadata
Chemical analysis

Is my:sameAs the same as your:sameAs? Lenticular lenses for context-specific identity

Idrissou, A. K., Hoekstra, R., Van Harmelen, F., Khalili, A. & Van Den Besselaar, P., 4 Dec 2017, Proceedings of the Knowledge Capture Conference, K-CAP 2017. Association for Computing Machinery, Inc, p. 1-8 8 p. 23

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Lenses
Social sciences
Semantic Web
Metadata
Chemical analysis

Knowledge-Driven Paper Retrieval to Support Updating of Clinical Guidelines

Carretta Zamborlini, V., Hu, Q., Huang, Z., Da Silveira, M., Pruski, C., ten Teije, A. C. M. & van Harmelen, F. A. H., 2017, Knowledge Representation for Health Care: HEC 2016 International Joint Workshop, KR4HC/ProHealth 2016, Munich, Germany, September 2, 2016, Revised Selected Papers. Riaño, D., Lenz, R. & Reichert, M. (eds.). Cham: Springer International Publishing Switzerland, p. 71-89 19 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Knowledge Representation for Clinical Guidelines: with applications to Multimorbidity Analysis and Literature Search

Carretta Zamborlini, V., 2017, 238 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Logics for causal inference under uncertainty

Magliacane, S., 2017, 159 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Opening the SMS platform to users: Deliverable D7.2 - RISIS project

van den Besselaar, P. A. A., Khalili, A., de Graaf, K. A., Idrissou, O. A. K. & van Harmelen, F., 2017, RISIS. 46 p.

Research output: Book / ReportReportAcademic

Data integration
Innovation

Semantically Mapping Science (SMS) Platform

Khalili, A., van den Besselaar, P., Al Koudous, I., de Graaf, K. A. & van Harmelen, F., 2017, SemSci 2017: Enabling Open Semantic Science. CEUR Workshop Proceedings, p. 1-6 6 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

SMS: a platform for linking and enriching data for science and innovation studies: An example

van den Besselaar, P. A. A., Khalili, A., Idrissou, O. A. K., de Graaf, K. A. & van Harmelen, F., 2017.

Research output: Contribution to ConferencePaperAcademic

User-Driven Pattern Mining on knowledge graphs: an Archaeological Case Study

Wilcke, W. X., de Boer, V. & van Harmelen, F., 9 Jun 2017. 2 p.

Research output: Contribution to ConferenceAbstractAcademic

Open Access
File
expert
paradigm
experiment
community
2016

A Contextualised Semantics for owl: sameAs

Beek, W. G. J., Schlobach, K. S. & van Harmelen, F. A. H., 2016, The Semantic Web. Latest Advances and New Domains - 13th International Conference, ESWC 2016, Heraklion, Crete, Greece, May 29 - June 2, 2016, Proceedings. Springer/Verlag, Vol. 9678. p. 405-419 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9678).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Semantics
Semantic Web
Linked Data
Assertion
Reuse

Adaptive Linked Data-Driven Web Components: Building Flexible and Reusable Semantic Web Interfaces - Building Flexible and Reusable Semantic Web Interfaces

Khalili, A., Loizou, A. & van Harmelen, F. A. H., 2016, The Semantic Web. Latest Advances and New Domains - 13th International Conference, ESWC 2016, Heraklion, Crete, Greece, May 29 - June 2, 2016, Proceedings. Springer, Vol. 9678. p. 677-692 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9678).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Linked Data
Semantic Web
Data-driven
Facings
Query languages

A Deep Neural Network for Link Prediction on Knowledge Graphs

Wilcke, W. X., de Boer, V., van Harmelen, F. A. H. & de Kleijn, M. T. M., 2016. 2 p.

Research output: Contribution to ConferenceAbstractAcademic

Open Access
File

Are names meaningful? Quantifying social meaning on the semantic web

de Rooij, S., Beek, W., Bloem, P., van Harmelen, F. & Schlobach, S., 2016, The Semantic Web - 15th International Semantic Web Conference, ISWC 2016, Proceedings. Springer/Verlag, Vol. 9981 LNCS. p. 184-199 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9981 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Semantic Web
Statistical Model
Quantify
Information Content
Meaning

A Task-based Comparison of Linguistic and Semantic Document Retrieval Methods in the Medical Domain

Shafahi, M., Hu, Q., Afsarmanesh, H., Huang, Z., ten Teije, A. C. M. & van Harmelen, F. A. H., 2016, In : CEUR Workshop Proceedings. 1613

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Linguistics
Semantics
Experiments

A topic-centric approach to detecting new evidences for evidence-based medical guidelines

Hu, Q., Huang, Z., ten Teije, A., van Harmelen, F., Marshall, M. S. & Dekker, A., 2016, HEALTHINF 2016 - 9th International Conference on Health Informatics, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016. SciTePress, p. 282-289 8 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Search engines
Experiments

Generalizing the Detection of Internal and External Interactions in Clinical Guidelines

Carretta Zamborlini, V., Hoekstra, R., Da Silveira, M., Pruski, C., ten Teije, A. & van Harmelen, F., 2016, HEALTHINF 2016 - 9th International Conference on Health Informatics, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016. SciTePress, p. 105-116 12 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Medical problems
Merging

Inferring recommendation interactions in clinical guidelines

Carretta Zamborlini, V., Hoekstra, R., Da Silveira, M., Pruski, C., ten Teije, A. C. M. & van Harmelen, F. A. H., 2016, In : Semantic Web. 7, 4, p. 421-446 26 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Drug interactions
Medical problems
Semantic Web

Interview with Frank van Harmelen on "Linked Data and Business Information Systems"

Auer, S. & van Harmelen, F., Oct 2016, In : Business & Information Systems Engineering. 58, 5, p. 371-373

Research output: Contribution to JournalArticleProfessional

Knowledge Services Using Rule-Based Formalization for Eligibility Criteria of Clinical Trials

Huang, Z., Hu, Q., ten Teije, A. C. M., van Harmelen, F. A. H. & Ait-Mokhtar, S., 2016, Health Information Science - 5th International Conference, HIS 2016, Proceedings. Springer/Verlag, Vol. 10038 LNCS. p. 49-61 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10038 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Logic programming
Reusability
Terminology
Formalization
Clinical Trials

LOD Laundromat: Why the Semantic Web needs centralization (even if we don't like it)

Beek, W., Rietveld, L., Schlobach, S. & van Harmelen, F., 1 Mar 2016, In : IEEE Internet Computing. 20, 2, p. 78-81 4 p., 7420493.

Research output: Contribution to JournalArticleAcademicpeer-review

Semantic Web

Publishing and Consuming Linked Data

Rietveld, L. J., 2016

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Refining Statistical Data on the Web

Merono Penuela, A., 2016

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

SCRY: Extending SPARQL with custom data processing methods for the life sciences

Stringer, B., Meroño-peñuela, A., Abeln, S., van Harmelen, F. & Heringa, J., 2016, In : CEUR Workshop Proceedings. 1795, p. 1-10 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

SMS: a linked open data infrastructure for science and innovation studies.

van den Besselaar, P., Khalili, A., Idrissou, O., Schlobach, K. S. & van Harmelen, F. A. H., 2016, Peripheries, Frontiers and Beyond; proceedings of the 21st STI Conference. Rafols, I. (ed.). University Valencia, p. 106-114 9 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

SWISH for prototyping clinical guideline interactions theory

Carretta Zamborlini, V., Wielemaker, J., Da Silveira, M., Pruski, C., ten Teije, A. & van Harmelen, F. A. H., 2016, In : CEUR Workshop Proceedings. 1795

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Semantic Web
Experiments

Towards an open data infrastructure for STI data. OECD Blue Sky Conference, Gent, September 2016

van den Besselaar, P., Khalili, A., de Graaf, K. A., Idrissou, O., Loizou, A., Schlobach, K. S. & van Harmelen, F. A. H., 2016.

Research output: Contribution to ConferencePaperOther research output

2015

A Compact In-Memory Dictionary for RDF data

Bazoubandi, H. R., de Rooij, S., Urbani, J., ten Teije, A., van Harmelen, F. & Bal, H., 2015, The Semantic Web: Latest Advances and New Domains - 12th European Semantic Web Conference, ESWC 2015, Proceedings. Springer/Verlag, Vol. 9088. p. 205-220 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9088).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Glossaries
Data storage equipment
Prefix
Data structures
Data Structures

Analyzing Recommendations Interactions in Clinical Guidelines: Impact of action type hierarchies and causation beliefs

Carretta Zamborlini, V., Da Silveira, M., Pruski, C., ten Teije, A. & van Harmelen, F., 2015, Artificial Intelligence in Medicine - 15th Conference on Artificial Intelligence in Medicine, AIME 2015, Proceedings. Springer/Verlag, Vol. 9105. p. 317-326 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9105).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Clinical Guidelines
Causation
Reusability
Scalability
Recommendations