prof. dr. F.J. Bruggeman

prof. dr.

20002019
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Research Output 2000 2019

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2011

From silicon cell to silicon human.

Westerhoff, H. V., Verma, M., Bruggeman, F. J., Kolodkin, A. N., Swat, M., Hayes, N., Nardelli, M., Bakker, B. M. & Snoep, J. L., 2011, BetaSys, Stystems Biology 2. Booss-Bavrbek, B., Klosgen, B., Larsen, J., Pociot, F. & Renstrom, E. (eds.). Springer Science + Business Media., p. 439-460

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Modelling approaches in systems biology, including Silicon Cell models.

Kolodkin, A. N., Boogerd, F. C., Bruggeman, F. J. & Westerhoff, H. V., 2011, Systems Biology and Livestock Science. te Pas, M. F. W., Woelders, H. & Bannink, A. (eds.). Wiley-Blackwell, p. 31-51

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Origins of stochastic intracellular processes and consequences for cell-to-cell variability and cellular survival strategies

Schwabe, A., Dobrzynski, M., Rybakova, E. N., Verschure, P. & Bruggeman, F. J., 2011, Methods in Enzymology. Jameson, D., Verma, M. & Westerhoff, H. V. (eds.). Burlington: Academic Press, p. 597-625 (Methods in Systems Biology; no. 50).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

2010

Systems Biology: towards realistic and useful models of molecular networks.

Bruggeman, F. J., Kolodkin, A. N., Rybakova, E. N., Mone, M. J. & Westerhoff, H. V., 2010, Nuclear receptors. Current concepts and future challenges.. Bunce, C. M. & Campbell, M. J. (eds.). Springer Science+Bunsiness Media BV, p. 439-453 (Proteins and Cell Regulation).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

2008

Silicon cell models: construction, analysis, and reduction.

Bruggeman, F. J., Hardin, H. M., Schuppen, J. H. & Westerhoff, H. V., 2008, Biosimulation in Drug Development.. Bertau, M., Mosekilde, E. & Westerhoff, H. V. (eds.). Weinheim, Germany: Wiley-VCH Verlag GmbH, KGaA, p. 403-423

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

2007

Afterthoughts as foundations for systems biology.

Boogerd, F. C., Bruggeman, F. J., Hofmeyr, J. H. S. & Westerhoff, H. V., 2007, Systems Biology - Philosophical Foundations. Boogerd, F. C., Bruggeman, F. J., Hofmeyr, J-HS. & Westerhoff, H. V. (eds.). Amsterdam The Netherlands: Elsevier, p. 321-336 342 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Introduction to Systems Biology.

Bruggeman, F. J., Hornberg, J. J., Boogerd, F. C. & Westerhoff, H. V., 2007, Plant Systems Biology. Baginsky, S. & Fernie, A. R. (eds.). Experientia Supplementum, p. 1-19

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Systems Biology and the reconstruction of the Cell: from molecular components to integral function.

Bruggeman, F. J., Rossell Aragort, S. L., van Eunen, K., Bouwman, J., Westerhoff, H. V. & Bakker, B. M., 2007, Subcellular fractionation and proteomics.. Bertrand, E. & Faupel, M. (eds.). Dordrecht The Netherlands: Springer, p. 239-262

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Towards philosophical foundations of Systems Biology: introduction.

Boogerd, F. C., Bruggeman, F. J., Hofmeyr, J. H. S. & Westerhoff, H. V., 2007, Systems Biology - Philosophical Foundations. Boogerd, F. C., Bruggeman, F. J., Hofmeyr, J-HS. & Westerhoff, H. V. (eds.). Amsterdam The Netherlands: Elsevier, p. 3-20 342 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

2005

Interaktion von Biologie und Wissenschaftsphilosophie: Erklarungen emergenten Verhaltens von Zellen

Bruggeman, F. J., Boogerd, F. C., Westerhoff, H. V., Richardson, R. C. & Stephan, A., 2005, Einfuhrung in die Philosophie der Biologie.. Krohs, U. & Toepher, G. (eds.). p. 379-400

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Introduction to computational models of biochemical reaction networks.

Bruggeman, F. J., Bakker, B. M., Hornberg, J. J. & Westerhoff, H. V., 2005, Computational Systems Biology. Kriete, A. & Eils, R. (eds.). London: Elsevier Academic Press, p. 127-148

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

2000

Is the signal transduction network emanating from the EGP receptor bistable in vivo

Bruggeman, F. J., Boogerd, F. C., Hornberg, J. J., Lankelma, J., Somsen, O. J. G. & Westerhoff, H. V., 2000, Animating the cellular map.. Hofmeyr, J-HS., Rohwer, J. M. & Snoep, J. L. (eds.). STellenbosch - South Africa: Stellenbosch University Press, p. 159-163

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review