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Research Output 1986 2018

Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development

Bonzanni, N., Krepska, E., Feenstra, K. A., Fokkink, W. J., Kielmann, T., Bal, H. E. & Heringa, J., 15 Aug 2009, In : Bioinformatics. 25, 16, p. 2049-56 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Predictive Modeling
Biological Phenomena
Developmental Biology
Caenorhabditis elegans
MicroRNAs

eyeDentify: Multimedia Cyber Foraging from a Smartphone

Kemp, R., Palmer, N. O., Kielmann, T., Seinstra, F. J., Drost, N., Maassen, J. & Bal, H. E., 2009, IEEE International Symposium on Multimedia (ISM2009).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

High-throughput Multicast Communication for Grid Applications

den Burger, M. D., 2009

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
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Ibis: Real-World Problem Solving using Real-World Grids

Bal, H. E., Drost, N., Kemp, R., Maassen, J., van Nieuwpoort, R. V., van Reeuwijk, C. & Seinstra, F. J., 2009, Proceedings of the the 23rd International Parallel & Distributed Processing Symposium (IPDPS 2009) - Sixth High-Performance Grid Computing Workshop (HPGC 2009). {Rome, Italy}

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Mapping and synchronizing streaming applications on Cell processors

Nijhuis, M. H. J., Bos, H. J., Bal, H. E. & Augonnet, C., 2009, International Conference on High Performance Embedded Architectures & Compilers.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Solving Challenges of Mobile Computing Using Grid techniques

Palmer, N. O., Kemp, R., Kielmann, T. & Bal, H. E., 2009, hotmobile.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2008

Design Issues for Qualitative Modelling of Biological Cells with Petri Nets

Krepska, E., Bonzanni, N., Feenstra, K. A., Fokkink, W. J., Kielmann, T., Bal, H. E. & Heringa, J., 2008, In : Lecture Notes in Computer Science. 5054, p. 48-62

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
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Experiences with Fine-grained Distributed Supercomputing on a 10G Testbed

Verstoep, K., Maassen, J., Bal, H. E. & Romein, J. W., 2008, Proc. 8th IEEE Int. Symp. on Cluster Computing and the Grid (CCGRID'08). Lyon, France, p. 376-383

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

High Performance Computing and Grids in Action, Vol. 16 of Advances in Parallel Computing (Ed. L. Grandinetti

Cappello, F. & Bal, H. E., 2008, Unknown. IOP Press Amsterdam

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

HITP: A Transmission Protocol for Scalable High-Performance Distributed Storage

Giacomin, P., Bassi, A., Seinstra, F. J., Kielmann, T. & Bal, H. E., 2008, Proceedings of the 14th International Euro-Par Conference (Euro-Par 2008). {Las Palmas de Gran Canaria, Canary Islands, Spain}, p. 950-960

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Measuring in Virtual Reality: A Case Study in Dentistry

Germans, D. M., Spoelder, H. J. W., Renambot, L. P. M., Bal, H. E., van Daatselaar, S. & van der Stelt, P. F., 2008, In : IEEE Transactions on Instrumentation and Measurement. 57, 4, p. 1177-1184

Research output: Contribution to JournalArticleAcademicpeer-review

dentistry
Dentistry
virtual reality
Virtual reality
canals

Modeling Just-in-Time Communication in Distributed Real-Time Multimedia Applications

Yang, R., van der Mei, R. D., Roubos, D., Seinstra, F. J., Koole, G. M. & Bal, H. E., 2008, Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008). {Lyon, France}

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Resource Tracking in Parallel and Distributed Applications (poster)

Drost, N., van Nieuwpoort, R. V., Maassen, J. & Bal, H. E., 2008, Proc. of 17th IEEE International Symposium on High-Performance Distributed Computing (HPDC). Bosten, MA, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

The Ibis Project: Simplifying Grid Programming and Deployment

Bal, H. E., Maassen, J., van Nieuwpoort, R. V., Kielmann, T., Drost, N., Jacobs, C., Seinstra, F. J. & Kemp, R., 2008, European Projects Showcase, special track at the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

The Ibis Project: Simplifying Grid Programming and Deployment

Bal, H. E., Maassen, J., van Nieuwpoort, R. V., Kielmann, T., Drost, N., Jacobs, C. J. H., Seinstra, F. J. & Kemp, R., 2008, European Projects Showcase, special track at the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2007

A component-based coordination language for efficient reconfigurable streaming applications

Nijhuis, M. H. J., Bos, H. J. & Bal, H. E., 2007, Proc. of International Conference on Parallel Processing (ICPP'07). Xian, China

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

ARRG: Real-World Gossiping

Drost, N., Ogston, E. F. Y. L., van Nieuwpoort, R. V. & Bal, H. E., 2007, Proceedings of The 16th IEEE International Symposium on High-Performance Distributed Computing (HPDC). Monterey, CA, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Handling complexity and change in grid computing

Wrzesinska, G., 2007, Amsterdam, The Netherlands.

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
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Lessons learned from building and calibrating the ICWall, a stereo tiled display: Research Articles

van der Schaaf, T., Germans, D. M., Bal, H. E. & Koutek, M., 2007, In : Computer Animation and Virtual Worlds. 18, 3, p. 193-210

Research output: Contribution to JournalArticleAcademicpeer-review

Display devices
Calibration
Depth perception
Tile
Application programming interfaces (API)

Parallel processing of large datasets from nanoLC-FTICR-MS measurements

van der Burgt, Y. E. M., Taban, I. M., Konijnenburg, M., Biskup, M., Duursma, M. C., Heeren, R. M. A., Rompp, A., van Nieuwpoort, R. V. & Bal, H. E., 2007, In : Journal of the American Society for Mass Spectrometry. 18, p. 152-161

Research output: Contribution to JournalArticleAcademicpeer-review

Processing
Distributed computer systems
Noise abatement
Proteomics
Calibration

Self-adaptive Applications on the Grid

Wrzesinska, G., Maassen, J. & Bal, H. E., 2007, ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP'07). San Jose, CA, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Smartsockets: solving the connectivity problems in grid computing

Maassen, J. & Bal, H. E., 2007, HPDC '07: Proceedings of the 16th international symposium on High performance distributed computing. New York, NY, USA: ACM, p. 1-10

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

SP@CE - An SP-based programming model for consumer electronics streaming applications

Varbanescu, A. L., Nijhuis, M., Escribano, A. G., Sips, H., Bos, H. & Bal, H., 1 Dec 2007, Languages and Compilers for Parallel Computing - 19th International Workshop, LCPC 2006, Revised Papers. Vol. 4382 LNCS. p. 33-48 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4382 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Consumer electronics
Streaming
Programming Model
Electronics
Multimedia Streaming

User-Friendly and Reliable Grid Computing Based on Imperfect Middleware

van Nieuwpoort, R. V., Kielmann, T. & Bal, H. E., 2007, Proceedings of the ACM/IEEE Conference on Supercomputing (SC'07).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2006

Adaptive Load Balancing for Divide-and-Conquer Grid Applications

van Nieuwpoort, R. V., Maassen, J., Wrzesinska, G., Kielmann, T. & Bal, H. E., 2006, In : Journal of supercomputing.

Research output: Contribution to JournalArticleAcademicpeer-review

Fault-tolerant Scheduling of Fine-grained Tasks in Grid Environments

Wrzesinska, G., van Nieuwpoort, R. V., Maassen, J., Kielmann, T. & Bal, H. E., 2006, In : High performance computing applications. 20, 1, p. 103-114

Research output: Contribution to JournalArticleAcademicpeer-review

Fault-tolerant
Scheduling
Grid
Fault tolerance
Fault Tolerance

ICWall: a calibrated stereo tiled display from commodity components

van der Schaaf, T., Germans, D. M., Koutek, M. & Bal, H. E., 2006, VRCIA '06: Proceedings of the 2006 ACM international conference on Virtual reality continuum and its applications. New York, NY, USA: ACM, p. 289-296

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Parallel Particle Rendering: a Performance Comparison between Chromium and Aura

van der Schaaf, T., Koutek, M. & Bal, H. E., 2006, 6th Eurographics Symposium on Parallel Graphics and Visualization. p. 137-144

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Satin++: Divide-and-Share on the Grid

Wrzesinska, G., Maassen, J., Verstoep, K. & Bal, H. E., 2006, Second IEEE International Conference on e-Science and Grid Computing (e-Science'06). Amsterdam, The Netherlands

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Simple Locality-Aware Co-allocation in Peer-to-Peer Supercomputing

Drost, N., van Nieuwpoort, R. V. & Bal, H. E., 2006, GP2P: Sixth International Workshop on Global and Peer-2-Peer Computing. Singapore

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

SP@CE - An SP-based Programming Model for Consumer Electronics Streaming Applications

Varbanescu, A. L., Nijhuis, M. H. J., Gonzalez-Escribano, A., Sips, H. J., Bos, H. J. & Bal, H. E., 2006, Languages and Compilers for Parallel Computing (LCPC'06), accepted for publication. New Orleans, Louisiana, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Supporting Reconfigurable Parallel Multimedia Applications

Nijhuis, M. H. J., Bos, H. J. & Bal, H. E., 2006, Proceedings of Euro-Par'06 (distinguished paper). Dresden, Germany: Springer-Verlag LNCS

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2005

Balanced Multicasting: High-throughput Communication for Grid Applications

den Burger, M. D., Kielmann, T. & Bal, H. E., 2005, Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing. Seattle, CA, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Developing Java Grid Applications with Ibis

van Reeuwijk, C., van Nieuwpoort, R. V. & Bal, H. E., 2005, Euro-Par 2005. p. 411-420

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Developing Java Grid Applications with Ibis

van Reeuwijk, K., van Nieuwpoort, R. & Bal, H. E., 2005, Proc. of the 11th International Euro-Par Conference. Lisbon, Portugal, p. 411-420

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Fault-Tolerance, Malleability and Migration for Divide-and-Conquer Applications on the Grid.

Wrzesinska, G., van Nieuwpoort, R. V., Maassen, J. & Bal, H. E., 2005, Proc. of 19th International Parallel and Distributed Processing Symposium. Denver, CO, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ibis: a Flexible and Efficient Java based Grid Programming Environment

van Nieuwpoort, R. V., Maassen, J., Wrzesinska, G., Hofman, R., Jacobs, C. J. H., Kielmann, T. & Bal, H. E., 2005, In : Concurrency and Computation: Practice and Experience. 17, 7-8, p. 1079-1107

Research output: Contribution to JournalArticleAcademicpeer-review

Programming Environments
Java
Grid
Network protocols
Grid computing

NetIbis: An Efficient and Dynamic Communication System for Heterogeneous Grids

Aumage, O. G. V., Hofman, R. & Bal, H. E., 2005, Proc. of 5rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2005). Cardiff, UK

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Object combining: a new aggressive optimization for object intensive programs: Research Articles

Veldema, R. S., Jacobs, C. J. H., Hofman, R. F. H. & Bal, H. E., 2005, In : Concurrency and Computation: Practice and Experience. 17, 5-6, p. 439-464

Research output: Contribution to JournalArticleAcademicpeer-review

Optimization
Data storage equipment
Data structures
Managers
Object

Robust distributed systems - achieving self-management through inference

de Bruijn, W. J., Bos, H. J. & Bal, H. E., 2005, Proceedings of First International IEEE WoWMoM Workshop on Autonomic Communications and Computing, ACC2005. Taormina, Italy

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Satin: Simple and Efficient Java-based Grid Programming

van Nieuwpoort, R. V., Maassen, J., Kielmann, T. & Bal, H. E., 2005, In : Scalable Computing: Practice and Experience. 6, 3, p. 19-32

Research output: Contribution to JournalArticleAcademicpeer-review

Transparent Fault Tolerance for Grid Applications.

Garbacki, P., Biskupski, B. & Bal, H. E., 2005, EGC. Sloot, P. M. A., Hoekstra, A. G., Priol, T., Reinefeld, A. & Bubak, M. (eds.). Springer, p. 671-680 (Lecture Notes in Computer Science).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2004

A High Performance Java Middleware with a Real Application

Huet, F., Caromel, D. & Bal, H. E., 2004, SC '04: Proceedings of the 2004 ACM/IEEE conference on Supercomputing. Washington, DC, USA, p. 2

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Blueprint for a New Computing Infrastructure (2nd ed.)

Bal, H. E., Casanova, H., Dongarra, J. & Matsuoka, S., 2004, Unknown. Morgan Kaufmann, p. 463-489

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Cluster communication protocols for parallel-programming systems

Verstoep, K., Bhoedjang, R. A. F., Rühl, T., Bal, H. E. & Hofman, R., 2004, In : ACM Transactions on Computer Systems. 22, 3, p. 281-325

Research output: Contribution to JournalArticleAcademicpeer-review

Parallel programming
Interfaces (computer)
Computer systems
Network protocols
Firmware

Wide-Area Communication for Grids: An Integrated Solution to Connectivity, Performance and Security Problems

Denis, A., Aumage, O. G. V., Hofman, R., Verstoep, K., Kielmann, T. & Bal, H. E., 2004, 13th HPDC. Honolulu, Hawaii, USA

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2003

A Million-Fold Speed Improvement in Genomic Repeats Detection.

Romein, J. W., Heringa, J. & Bal, H. E., 2003, SC. ACM, p. 20

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

CCJ: Object-based Message Passing and Collective Communication in Java

Nelisse, A. H. W., Maassen, J., Kielmann, T. & Bal, H. E., 2003, In : Concurrency and Computation: Practice and Experience. 15, 3-5, p. 341-369

Research output: Contribution to JournalArticleAcademicpeer-review

Compiler and Runtime Optimizations for Fine-Grained Distributed Shared Memory Systems

Veldema, R. S., 2003

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
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