If you made any changes in Pure these will be visible here soon.

Research Output 2000 2019

2019

Fast Segmentation through surface fairing (FastSURF): A novel semi-automatic hippocampus segmentation method

Bartel, F., Vrenken, H., van Herk, M., de Ruiter, M., Belderbos, J., Hulshof, J. & de Munck, J. C., 18 Jan 2019, In : PLoS ONE. 14, 1, p. 1-26 26 p., e0210641.

Research output: Contribution to JournalArticleAcademicpeer-review

hippocampus
Hippocampus
Atrophy
Workflow
Magnetic Resonance Spectroscopy

Predicting Optimal Strategies for Microbial Metabolic Pathways

Overal, G. B., 2019, 168 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2018

Maintaining maximal metabolic flux by gene expression control

Planqué, R., Hulshof, J., Teusink, B., Hendriks, J. C. & Bruggeman, F. J., 20 Sep 2018, In : PLoS Computational Biology. 14, 9, p. 1-20 20 p., e1006412.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Metabolites
Metabolic Networks and Pathways
Gene expression
Gene Expression
gene expression

Understanding start-up problems in yeast glycolysis

Overal, G. B., Teusink, B., Bruggeman, F. J., Hulshof, J. & Planqué, R., May 2018, In : Mathematical Biosciences. 299, May, p. 117-126 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Glycolysis
Start-up
glycolysis
Yeast
Yeasts
2017

A probabilistic approach on residual strength and damage buildup of high-performance fibers

Knoester, H., Hulshof, J. & Meester, R., 1 Feb 2017, In : Journal of Materials Science. 52, 4, p. 1898-1910 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fibers
Service life
Bearings (structural)
Aramid fibers
Experiments

Maintaining maximal metabolic rates by gene expression control

Planque, R., Hulshof, J., Teusink, B., Hendriks, J. C. & Bruggeman, F. J., 9 Mar 2017, In : bioRxiv.

Research output: Contribution to JournalArticleAcademicpeer-review

Probabilistic lifetime prediction with application to high-performance p-aramid fiber

Knoester, H., 2017, 121 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2015

Flow Laminarization and Acceleration by Suspended Particles

Bertsch, M., Hulshof, J. & Prostokishin, V. M., 2015, In : SIAM journal on applied mathematics. 75, 4, p. 1852-1883

Research output: Contribution to JournalArticleAcademicpeer-review

Extremes
Hurricanes
Asymptotic analysis
Formal Analysis
Laplace transforms

Modeling failure of high performance fibers: on the prediction of long-term time-to-failure

Knoester, H., Hulshof, J. & Meester, R., 2015, In : Journal of Materials Science. 50, 19, p. 6277-6290

Research output: Contribution to JournalArticleAcademicpeer-review

Fibers
Maximum likelihood estimation
Economics
Monte Carlo simulation
2014

Existence and linear stability of solutions of the ballistic VSC model

Hulshof, J., Nolet, R. W. & Prokert, G., 2014, In : Discrete and Continuous Dynamical Systems. Series S. 7, 1, p. 35-51 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Stability of Solutions
Linear Stability
Ballistics
First Eigenvalue
Vesicles

Fatal attraction in glycolysis: how Saccharomyces cerevisiae manages sudden transitions to high glucose.

van Heerden, J. H., Wortel, M. T., Bruggeman, F. J., Heijnen, J. J., Bollen, Y. J. M., Planque, R., Hulshof, J., O'Toole, T. G., Wahl, A. & Teusink, B., 2014, In : Microbial Cell. 1, 3, p. 103-106

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells.

van Heerden, J. H., Wortel, M. T., Bruggeman, F. J., Heijnen, J. J., Bollen, Y. J. M., Planque, R., Hulshof, J., O'Toole, T. G., Wahl, S. A. & Teusink, B., 2014, In : Science. 343, 6174, 1245114.

Research output: Contribution to JournalArticleAcademicpeer-review

Glycolysis
Substrate Cycling
Energy Metabolism
Hydrolysis
Adenosine Triphosphate

Metabolic states with maximal specific rate carry flux through an elementary flux mode.

Wortel, M. T., Peters, H., Hulshof, J., Teusink, B. & Bruggeman, F. J., 2014, In : The FEBS Journal. 28, p. 1547-1555

Research output: Contribution to JournalArticleAcademicpeer-review

Genes
Metabolic Networks and Pathways
Fluxes
Genome
Enzyme kinetics

Understanding bistability in yeast glycolysis using general properties of metabolic pathways.

Planque, R., Bruggeman, F. J., Teusink, B. & Hulshof, J., 2014, In : Mathematical Biosciences. 7492, p. 33-42

Research output: Contribution to JournalArticleAcademicpeer-review

Glycolysis
Bistability
glycolysis
Metabolic Networks and Pathways
Yeast
2013

Existence of solutions to the diffusive VSC model

Hulshof, J., Nolet, R. W. & Prokert, G., 2013, In : SIAM Journal on Mathematical Analysis. 45, 2, p. 700-727 28 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Vesicles
Existence of Solutions
Cells
Cell Wall
Hölder Space

Variational Modeling of Parabolic Free Boundary Problems

Zaal, M. M., 2013

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2012

Optimal Flood Control

Ran, A. C. M., Dickinson, P., Hulshof, J., Salmani, M. & Zaal, M. M., 2012, Proceedings of the Seventy-ninth European Study Group with Industry. Planqué, B., Bhulai, S., Hulshof, J., Kager, W. & Rot, T. (eds.). Amsterdam, p. 35-47

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2011

Energy concentration for 2-dimensional radially symmetric equivariant harmonic map heat flows

Bertsch, M., van der Hout, R. & Hulshof, J., 2011, In : Communications in Contemporary Mathematics. 13, 4, p. 675-695 20 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Equivariant Map
Harmonic Maps
Heat Flow
Bubble
Heat transfer

Parametric resonance and Hopf bifurcation analysis for a MEMS resonator

van der Avoort, C., van der Hout, R. & Hulshof, J., 2011, In : Physica D. Nonlinear Phenomena. 240, 11, p. 913-919 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Parametric Resonance
Hopf bifurcation
Bifurcation Analysis
Resonator
Micro-electro-mechanical Systems

Rigorous derivation of the Kuramoto-Sivashinsky equation from a 2D weakly nonlinear Stefan problem

Brauner, C. M., Hulshof, J. & Lorenzi, L., 2011, In : Interfaces and Free Boundaries. 13, p. 73-103 30 p., 1.

Research output: Contribution to JournalArticleAcademicpeer-review

Schmidt method
derivation
linear operators
free boundaries
liquid-solid interfaces

Travelling waves in a radiation-combustion free-boundary model for flame propagation

van den Berg, G. J. B., Elrofai, H. B. H. & Hulshof, J., 2011, In : Combustion Theory and Modelling. 15, p. 1-21

Research output: Contribution to JournalArticleAcademicpeer-review

free boundaries
flame propagation
Flame
Free Boundary
traveling waves
2010

A fully nonlinear equation for the flame front in a quasi-steady combustion model

Brauner, C-M., Hulshof, J., Lorenzi, L. & Sivashinsky, G. I., 2010, In : Discrete and Continuous Dynamical Systems. Series A. 27, 4, p. 1415-1446 32 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Fully Nonlinear Equations
Flame
Nonlinear equations
Combustion
Orbital Stability

Amplitude saturation of MEMS resonators explained by autoparametric resonance

van der Avoort, C., van der Hout, R., Bontemps, J. J. M., Steeneken, P. G., Le Phan, K., Fey, R. H. B., Hulshof, J. & van Beek, J. T. M., 2010, In : Journal of Micromechanics and Microengineering. 20, 10, p. 1-15 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

MEMS
Resonators
Electrostatic force
Equations of motion
Experiments
2009

How Hepatitis D Virus Can Hinder the Control of Hepatitis B Virus

Xiridiou, M., Borkent-Raven, B., Hulshof, J. & Wallinga, J., 2009, In : PLoS ONE. 4, 4, p. 1-10 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Hepatitis delta virus
Hepatitis Delta Virus
hepatitis D
Hepatitis B virus
Hepatitis D

Stability of the travelling wave in a 2D weakly nonlinear Stefan problem

Brauner, C-M., Hulshof, J. & Lorenzi, L., 2009, In : Kinetic and Related Models. 2, 1, p. 109-134 26 p.

Research output: Contribution to JournalArticleAcademicpeer-review

The radius of vanishing bubbles in equivariant harmonic map flow from {$D^2$} to {$S^2$}

Angenent, S. B., Hulshof, J. & Matano, H., 2009, In : SIAM Journal on Mathematical Analysis. 41, 3, p. 1121-1137

Research output: Contribution to JournalArticleAcademicpeer-review

Equivariant Map
Harmonic Maps
Bubble
Radius
Upper bound
2008

Integrable systems in Symplectic Geometry

Asadi, E., 2008

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

On the κ-θ model of cellular flames: existence in the large and asymptotics

Brauner, C-M., Frankel, M. L., Hulshof, J., Lunardi, A. & Sivashinsky, G. I., 2008, In : Discrete and Continuous Dynamical Systems. Series S. 1, 1, p. 27-39

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Stability of Radiative Propagating Flames

Elrofai, H. B. H., 2008

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Travelling waves for a combustion model coupled with hyperbolic radiation moment models

Hulshof, J. & Noble, P., 2008, In : Discrete and Continuous Dynamical Systems. Series B. 10, 1, p. 73-90

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2007

Mathematical Models for Flame Balls

Guyonne, V., 2007

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2006

Flame balls for a free boundary combustion model with radiative transfer

van den Berg, G. J. B., Guyonne, V. & Hulshof, J., 2006, In : SIAM journal on applied mathematics. 67, 1, p. 116-137 (electronic)

Research output: Contribution to JournalArticleAcademicpeer-review

Radiative Transfer
Radiative transfer
Flame
Free Boundary
Combustion

Mathematical techniques for neuromuscular analysis

Williams, J. F., Hek, G., Vardy, A., Rottschäfer, V., van den Berg, G. J. B. & Hulshof, J., 2006, Proceedings of the Fifty-Second European Study Group with Industry. Amsterdam: Centrum Wisk. Inform., p. 109-127 (CWI Syllabi).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Stability and attractors for the quasi-steady equation of cellular flames

Brauner, C-M., Frankel, M., Hulshof, J. & Roytburd, V., 2006, In : Interfaces and Free Boundaries. 8, 3, p. 301-316

Research output: Contribution to JournalArticleAcademicpeer-review

2005

Singularities at t=∞ in equivariant harmonic map flow

Angenent, S. B. & Hulshof, J., 2005, Geometric evolution equations. Providence, RI: American Mathematical Society, p. 1-15 (Contemp. Math.; no. 367).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

The speed law for highly radiative flames in a gaseous mixture with large activation energy

van den Berg, G. J. B., Brauner, C-M., Hulshof, J. & Lunardi, A., 2005, In : SIAM journal on applied mathematics. 66, 2, p. 408-432 (electronic)

Research output: Contribution to JournalArticleAcademicpeer-review

Activation Energy
Flame
Propagation Speed
Activation energy
Asymptotic analysis

Weakly nonlinear asymptotics of the κ-θ model of cellular flames: the Q-S equation

Brauner, C-M., Frankel, M., Hulshof, J. & Sivashinsky, G. I., 2005, In : Interfaces and Free Boundaries. 7, 2, p. 131-146

Research output: Contribution to JournalArticleAcademicpeer-review

2004

Multiplicity and stability of travelling wave solutions in a free boundary combustion-radiation problem

Baconneau, O., van den Berg, G. J. B., Brauner, C-M. & Hulshof, J., 2004, In : European Journal of Applied Mathematics. 15, 1, p. 79-102

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Traveling Wave Solutions
Free Boundary
Combustion
Multiplicity
Radiation

Stability in a two-dimensional combustion model

Hulshof, J. & Lorenzi, L., 2004, In : Interfaces and Free Boundaries. 6, 1, p. 1-29

Research output: Contribution to JournalArticleAcademicpeer-review

2003

A model problem for groundwater flow with dynamic capillary pressure: stability of travelling waves

Cuesta, C. & Hulshof, J., 2003, In : Nonlinear Analysis: Theory, Methods and Applications. 52, 4, p. 1199-1218

Research output: Contribution to JournalArticleAcademicpeer-review

Groundwater Flow
Groundwater flow
Capillarity
Burgers Equation
Traveling Wave

Formal asymptotics of bubbling in the harmonic map heat flow

van den Berg, G. J. B., Hulshof, J. & King, J. R., 2003, In : SIAM journal on applied mathematics. 63, 5, p. 1682-1717 (electronic)

Research output: Contribution to JournalArticleAcademicpeer-review

Nematic liquid crystals
Harmonic Maps
Heat Flow
Blow-up
Heat transfer

Integrable evolution equations: a Diophantine approach

van der Kamp, P. H., 2003

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Parametric dependence of exponents and eigenvalues in focusing porous media flows

Aronson, D. G., van den Berg, G. J. B. & Hulshof, J., 2003, In : European Journal of Applied Mathematics. 14, 4, p. 485-512

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Porous Media Flow
Porous Medium Equation
Porous materials
Exponent
Eigenvalue

Pseudo-parabolic equations with driving convection term

Cuesta, C., 2003

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

2001

Traveling waves for fourth order parabolic equations

van den Berg, G. J. B., Hulshof, J. & van der Vorst, R. C. A. M., 2001, In : SIAM Journal on Mathematical Analysis. 32, 6, p. 1342-1374

Research output: Contribution to JournalArticleAcademicpeer-review

2000

A general approach to stability in free boundary problems.

Brauner, C-M., Hulshof, J. & Lunardi, A., 2000, In : Journal of Differential Equations. 164, p. 16-48

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Free Boundary Problem
Fully Nonlinear
Boundary conditions
Stable and Unstable Manifolds
Nonlocal Problems

Dipoles and similarity solutions of the thin film equation in the half-line.

Bernis, F., Hulshof, J. & King, J. R., 2000, In : Nonlinearity. 13, p. 1-27

Research output: Contribution to JournalArticleAcademicpeer-review

Thin Film Equation
Similarity Solution
Dipole
Half line
Porosity

Infiltration in Porous Media with Dynamic Capillary Pressure: Travelling Waves.

van Duijn, C. J., Cuesta, C. & Hulshof, J., 2000, In : European Journal of Anaesthesiology. 11, p. 381-397

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

The "linear" limit of thin film flows as an obstacle-free boundary problem.

Bernis, F., Hulshof, J. & Quiros, F., 2000, In : SIAM journal on applied mathematics. 61, 3, p. 1062-1079

Research output: Contribution to JournalArticleAcademicpeer-review