J.M. Kooter

dr.

19982019
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Research Output 1998 2019

  • 18 Article
  • 3 PhD Thesis - Research VU, graduation VU
  • 1 Chapter
2019

Mistaken identity: Paracetamol induces amino acid starvation through mimicry of tyrosine and changes ubiquitin homeostasis

Huseinovic, A., 2019, 202 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
2018

Acetaminophen reduces the protein levels of high affinity amino acid permeases and causes tryptophan depletion

Huseinovic, A., Dekker, S. J., Boogaard, B., Vermeulen, N. P. E., Kooter, J. M. & Vos, J. C., Oct 2018, In : Amino Acids. 50, 10, p. 1377-1390 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Amino Acid Transport Systems
Acetaminophen
Tryptophan
Proteins
Yeast

Drug toxicity profiling of a Saccharomyces cerevisiae deubiquitinase deletion panel shows that acetaminophen mimics tyrosine

Huseinovic, A., van Dijk, M., Vermeulen, N. P. E., van Leeuwen, F., Kooter, J. M. & Vos, J. C., Mar 2018, In : Toxicology in Vitro. 47, p. 259-268 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Acetaminophen
Drug-Related Side Effects and Adverse Reactions
Yeast
Toxicity
Saccharomyces cerevisiae
2017

The effect of acetaminophen on ubiquitin homeostasis in Saccharomyces cerevisiae

Huseinovic, A., van Leeuwen, J., van Welsem, T., Stulemeijer, I., van Leeuwen, F., Vermeulen, N. P. E., Kooter, J. M. & Vos, J. C., 14 Mar 2017, In : PLoS ONE. 12, 3, p. 1-19 19 p., e0173573.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
acetaminophen
Acetaminophen
ubiquitin
Ubiquitin
Yeast
2015

Longitudinal assessment of DNA methylation changes during HPVE6E7-induced immortalization of primary keratinocytes

Schütze, D. M., Kooter, J. M., Wilting, S. M., Meijer, C. J. L. M., Quint, W. G. V., Snijders, P. J. F. & Steenbergen, R. D. M., 2015, In : Epigenetics. 10, 1, p. 73-81

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
DNA Methylation
Keratinocytes
Methylation
Growth
APC Genes

Zebrafish as a model to study the role of DNA methylation in environmental toxicology

Kamstra, J. H., Aleström, P., Kooter, J. M. & Legler, J., 2015, In : Environmental Science and Pollution Research International. 22, 21, p. 16262-16276

Research output: Contribution to JournalArticleAcademicpeer-review

Ecotoxicology
methylation
toxicology
Zebrafish
DNA Methylation
2010

hTERT promoter activity and CpG methylation in HPV-induced carcinogenesis

de Wilde, J., Kooter, J. M., Overmeer, R. M., Kramer, D., Meijer, C. J. L. M., Snijders, P. J. F. & Steenbergen, R. D. M., 2010, In : BMC Cancer. 10, 14 p., 271.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Methylation
Carcinogenesis
Telomerase
Uterine Cervical Neoplasms
DNA Methylation
2007

A single transgene locus triggers both transcriptional and post-transcriptional silencing through double-stranded RNA production

Mourrain, P., van Blokland, R., Kooter, J. & Vaucheret, H., 2007, In : Planta. 225, 2, p. 365-379

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Double-Stranded RNA
double-stranded RNA
Transgenes
transgenes
loci

Differentially methylated alleles in a distinct region of the human interleukin-1alpha promoter are associated with allele-specific expression of IL-1alpha in CD4+ T cells

Rietschoten van, J. G., Verzijlbergen, K. F., Gringhuis, S. I., Kraan, T. C., Bayley, J. P., Wierenga, E. A., Jones, P. A., Kooter, J. M. & Verweij, C. W., 2007, In : Blood. 108, p. 2143-21497 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

2006

A single transgene locus triggers both transcriptional and post-transcriptional silencing through double-stranded RNA production.

Mourrain, P., van Blokland, H. J. M., Kooter, J. M. & Vaucheret, H., 2006, In : Planta. 225, p. 365-379

Research output: Contribution to JournalArticleAcademic

Double-Stranded RNA
double-stranded RNA
Transgenes
transgenes
loci

Differentially methylated alleles in a distinct region of the human interleukin-1alpha promoter are associated with allele-specific expression of IL-1alpha in CD4+ T cells.

van Rietschoten, J. G. I., Verzijlbergen, K. F., Gringhuis, S. I., Kraan, T. C., Bayley, J. P., Wierenga, E. A., Jones, P. A., Kooter, J. M. & Verweij, C. L., 2006, In : Blood. 108, p. 2143-2149 7 p.

Research output: Contribution to JournalArticleAcademic

2005

RNA interference: double-stranded RNAs and the processing machinery.

Kooter, J. M., 2005, Plant Epigenetics. P.Meyer (ed.). Blackwell, p. 33-68 28 p. (Annual Plant Reviews; no. 19).

Research output: Chapter in Book / Report / Conference proceedingChapterProfessional

2002

Characterisation of RNAs associated with post-transcriptional silencing of flower pigmentation genes in Petunia hybrida

Muskens, M., 2002, M.Muskens.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

2001

Guiding gene silencing

Matzke, M. A., Matzke, A. J. M. & Kooter, J. M., 2001, In : Science. 293, p. 1080-1083

Research output: Contribution to JournalArticleAcademicpeer-review

Role of inverted repeats, heterochromatin and DNA methylation in post-transsriptional gene silencing

Vissers, A. P. A., 2001, 154 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Transcriptional and posttranscriptional gene silencing are mechanistically related

Sijen, T., Vijn, I., Rebocho, A. B., van Blokland, R., Roelofs, D., Mol, J. N. & Kooter, J. M., 20 Mar 2001, In : Current Biology. 11, 6, p. 436-40 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Double-Stranded RNA
double-stranded RNA
Gene Silencing
gene silencing
RNA Interference

Transcriptional and posttranscriptional silencing are mechanistically related

Sijen, L. M. T., Vijn, I. M. C., Barulho Rebocho, A., van Blokland, H. J. M., Roelofs, D., Mol, J. N. M. & Kooter, J. M., 2001, In : Current Biology. 11, p. 436-440

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Double-Stranded RNA
double-stranded RNA
Gene Silencing
gene silencing
RNA Interference
2000

Distinct features of post-transcriptional gene silencing by antisense transgenes in single copy and inverted T-DNA repeat loci.

Stam, M., de Bruin, R. A. M., van Blokland, H. J. M., van der Hoorn, R., Mol, J. N. M. & Kooter, J. M., 2000, In : Plant Journal. 21, p. 27-42 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

naringenin-chalcone synthase
RNA Interference
RNA interference
Transgenes
transgenes

Post-transcriptional gene-silencing: RNAs on the attack or on the defense

Sijen, L. M. T. & Kooter, J. M., 2000, In : BioEssays. 22, p. 520-531 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Role of inverted DNA repeats in transcriptional and post-transcriptional gene silencing.

Muskens, M., Vissers, A. P. A., Mol, J. N. M. & Kooter, J. M., 2000, In : Plant Molecular Biology. 43, p. 243-260 18 p.

Research output: Contribution to JournalArticleAcademicpeer-review

1999

Listening to the silent genes: Transgene silencing, gene regulation and pathogen control.

Kooter, J. M., Matzke, M. A. & Meyer, P., 1999, In : Trends in Plant Science. 4, 9, p. 340-347 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

gene silencing
transgenes
epigenetics
pathogens
viroids
1998