Personal profile
Personal information
Research
The aim of my research
Understanding control and regulation of metabolism to reveal selective drug targets in pathogens and other disease-causing cells.
Current research topics
- Control and regulation in parasite metabolism (Trypanosoma brucei, Schistosoma mansoni)
- Metabolism of cancer cells (liver cancer, head- and neck cancer)
- Systematic design of cell culture media.
Some highlights of my research:
- In-depth analysis of glucose and amino acid metabolism in liver cancer cells (Nilsson, Haanstra et al., 2020)
- Experimental proof for the model hypothesis that compartmentation of glycolysis in Trypanosoma brucei is essential to prevent a metabolic catastrophe (Haanstra et al., 2008).
- Proof-of-principle that eukaryotic metabolism can be targeted with limited side-effects to host cells (Haanstra et al., 2017)
- Understanding control and regulation in gene expression of the eukaryote Trypanosoma brucei – ranging from a three-gene locus (Haanstra et al, 2008) to genome-wide (Antwi et al., 2016)
My experience spans a broad range in (systems) biology – from wetlab experimentation to computational modelling. Depending on the needs in the project I contributed experimental data (e.g. Nilsson, Haanstra et al., 2020, Bosdriesz et al., 2018), computational models and/or simulations (e.g. Leroux, Haanstra et al., 2013), or both (e.g. Haanstra et al., 2017, Haanstra et al., 2008)
Teaching
- Examiner and lecturer of the master course ‘From Genome to Function’ for students of the master Biomolecular Sciences
- Lecturer in the master course ‘Parasitology’ in which I teach the subject ‘Metabolism of Parasites’
- Internship supervisor bachelor and master internships 5-10 students each year
Management
- Program Director master Biomolecular Sciences. This master trains students to become independent researchers.
- Director Graduate School A-life
Ancillary activities
No ancillary activities
Ancillary activities are updated daily
Keywords
- QR Microbiology
- Trypanosoma brucei
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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SLAM-seq reveals independent contributions of RNA processing and stability to gene expression in African trypanosomes
Luzak, V., Osses, E., Danese, A., Odendaal, C., Cosentino, R. O., Stricker, S. H., Haanstra, J. R., Erhard, F. & Siegel, T. N., 10 Feb 2025, In: Nucleic acids research. 53, 3, p. 1-16 16 p., gkae1203.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis
Nilsson, A., Haanstra, J. R., Engqvist, M., Gerding, A., Bakker, B. M., Klingmüller, U., Teusink, B. & Nielsen, J., 12 May 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 19, p. 10294-10304 11 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
How much (ATP) does it cost to build a trypanosome? A theoretical study on the quantity of ATP needed to maintain and duplicate a bloodstream-form Trypanosoma brucei cell
Nascimento, J. F., Souza, R. O. O., Alencar, M. B., Marsiccobetre, S., Murillo, A. M., Damasceno, F. S., Girard, R. B. M. M., Marchese, L., Luévano-Martinez, L. A., Achjian, R. W., Haanstra, J. R., Michels, P. A. M. & Silbe, A. M., Jul 2023, In: PLos Pathogens. 19, 7, p. 1-35 35 p., e1011522.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Targeting pathogen metabolism without collateral damage to the host.
Haanstra, J. R., Gerding, A., Dolga, A. M., Sorgdrager, F. J., Buist-Homan, M., du Toit, F., Faber, K. N., Holzhutter, H. G., Szoor, B., Matthews, K. R., Snoep, J. L., Westerhoff, H. V. & Bakker, B. M., 2017, In: Scientific Reports. 7, 40406.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
The unusual kinetics of lactate dehydrogenase of Schistosoma mansoni and their role in the rapid metabolic switch after penetration of the mammalian host
Bexkens, M. L., Martin, O. M. F., Heuvel, J. M. V. D., Schmitz, M. G. J., Teusink, B., Bakker, B. M., Hellemond, J. J. V., Haanstra, J. R., Walkinshaw, M. D. & Tielens, A. G. M., Jun 2024, In: International Journal for Parasitology. 54, 7, p. 367-378 12 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Courses
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Targeting metabolic pathways as treatment strategy in head and neck cancer
Haanstra, J. (Principal Investigator), Odendaal, C. (Project Researcher), Dalhuisen, R. (PhD candidate), Milou, H. (Project Researcher), Stigter-van Walsum, M. (Project Researcher), Poell, J. (Project Researcher), Teusink, B. (Project Researcher) & Brakenhoff, R. H. (Principal Investigator)
1/05/23 → 30/04/28
Project: Research
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Aimms Star graduate programme
van Boxtel, C. (Project Researcher), Bebelman, M. (Project Researcher), Steenhuis, M. (Project Researcher), Ortega Ugalde, S. (Project Researcher) & Haanstra, J. (Principal Investigator)
1/09/15 → 1/09/20
Project: Research
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EraSysApp: Integrating Modelling of Metabolism and Signalling towards an Application in Liver Cancer (Imomesic)
Haanstra, J. (Project Researcher), Teusink, B. (Principal Investigator) & Olivier, B. (Project Researcher)
1/02/15 → 1/02/18
Project: Research
Prizes / Grants
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Targeting metabolic pathways as treatment strategy in head and neck cancer’
Brakenhoff, R. H. (Recipient) & Haanstra, J. (Recipient), 2022
Prize / Grant: Grant › Academic
Datasets
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Additional file 1: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Antwi, E. (Contributor), Haanstra, J. (Contributor), Ramasamy, G. (Contributor), Jensen, B. (Contributor), Droll, D. (Contributor), Rojas, F. (Contributor), Minia, I. (Contributor), Terrao, M. (Contributor), MercĂŠ, C. (Contributor), Matthews, K. (Contributor), Myler, P. (Contributor), Parsons, M. (Contributor) & Clayton, C. (Contributor), Unknown, 26 Apr 2016
DOI: 10.6084/m9.figshare.c.3636047_d18.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440353/1
Dataset / Software: Dataset
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Additional file 17: Table S3. of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Antwi, E. B. (Creator), Haanstra, J. R. (Creator), Ramasamy, G. (Contributor), Jensen, B. (Creator), Droll, D. (Creator), Rojas, F. (Creator), Minia, I. (Creator), Terrao, M. (Creator), Mercé, C. (Contributor), Matthews, K. (Creator), Myler, P. J. (Creator), Parsons, M. (Creator) & Clayton, C. (Creator), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3636047_d2, https://figshare.com/articles/Additional_file_17_Table_S3_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440305
Dataset / Software: Dataset
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Additional file 4: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Antwi, E. B. (Creator), Haanstra, J. R. (Creator), Ramasamy, G. (Contributor), Jensen, B. (Creator), Droll, D. (Creator), Rojas, F. (Creator), Minia, I. (Creator), Terrao, M. (Creator), Mercé, C. (Contributor), Matthews, K. (Creator), Myler, P. J. (Creator), Parsons, M. (Creator) & Clayton, C. (Creator), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3636047_d8, https://figshare.com/articles/Additional_file_4_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440323
Dataset / Software: Dataset
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Additional file 6: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Antwi, E. (Contributor), Haanstra, J. (Contributor), Ramasamy, G. (Contributor), Jensen, B. (Contributor), Droll, D. (Contributor), Rojas, F. (Contributor), Minia, I. (Contributor), Terrao, M. (Contributor), MercĂŠ, C. (Contributor), Matthews, K. (Contributor), Myler, P. (Contributor), Parsons, M. (Contributor) & Clayton, C. (Contributor), Unknown, 26 Apr 2016
DOI: 10.6084/m9.figshare.c.3636047_d1.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440302/1
Dataset / Software: Dataset
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Additional file 14: Table S2. of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Antwi, E. (Contributor), Haanstra, J. (Contributor), Ramasamy, G. (Contributor), Jensen, B. (Contributor), Droll, D. (Contributor), Rojas, F. (Contributor), Minia, I. (Contributor), Terrao, M. (Contributor), Mercé, C. (Contributor), Matthews, K. (Contributor), Myler, P. (Contributor), Parsons, M. (Contributor) & Clayton, C. (Contributor), Unknown, 26 Apr 2016
DOI: 10.6084/m9.figshare.c.3636047_d3.v1, https://springernature.figshare.com/articles/dataset/Additional_file_14_Table_S2_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440308/1
Dataset / Software: Dataset