Research output per year
Research output per year
Personal profile
Personal information
Leen Stougie (PhD 1985 at Erasmus Universiteit Rotterdam) is part time full professor in Operations Research at the Vrije Universiteit Amsterdam since 2008. His main occupation is Senior Researcher and head of the Life Sciences and Health group at CWI (Centre for Mathematics and Computer Science) in Amsterdam. Leen has previously worked at the department of Mathematics at the TU Eindhoven.
Research
Operations Research, Combinatorial Optimization, Scheduling, Complexity, Approximation Algorithms, Computational Biology
Teaching
Ancillary activities
No ancillary activities
Ancillary activities are updated daily
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Elastic-Degenerate String Matching with 1 Error or Mismatch
Bernardini, G., Gabory, E., Pissis, S. P., Stougie, L., Sweering, M. & Zuba, W., Oct 2024, In: Theory of Computing Systems. 68, 5, p. 1442-1467 26 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Inferring phylogenetic networks from multifurcating trees via cherry picking and machine learning
Bernardini, G., van Iersel, L., Julien, E. & Stougie, L., Oct 2024, In: Molecular Phylogenetics and Evolution. 199, October, 12 p., 108137.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Connecting de Bruijn Graphs
Bernardini, G., Chen, H., Gørtz, I. L., Krogh, C., Loukides, G., Pissis, S. P., Stougie, L. & Sweering, M., 2024, 35th Annual Symposium on Combinatorial Pattern Matching (CPM 2024): [Proceedings]. Inenaga, S. & Puglisi, S. J. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, p. 1-16 16 p. 6. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 296).Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
Open Access -
A duality based 2-approximation algorithm for maximum agreement forest
Olver, N., Schalekamp, F., van der Ster, S., Stougie, L. & van Zuylen, A., Mar 2023, In: Mathematical Programming. 198, 1, p. 811-853 43 p.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Constructing phylogenetic networks via cherry picking and machine learning
Bernardini, G., van Iersel, L., Julien, E. & Stougie, L., 2023, In: Algorithms for Molecular Biology. 18, p. 1-28 28 p., 13.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Courses
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31st Annual Conference on Intelligent Systems For Molecular Biology (ISMB) (Event)
Leen Stougie (Member)
23 Jul 2023 → 27 Jul 2023Activity: Membership › Academic
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2023 ALGO conference
Leen Stougie (Organiser)
4 Sept 2023 → 8 Sept 2023Activity: Participating in or organising an event › Conference › Academic
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Member of the Doctorate Committee of the PhD-defense of Danny Blom, 15 December 2023, Technische Universiteit Eindhoven
Leen Stougie (Examiner)
15 Dec 2023Activity: PhD thesis Examination › PhD thesis examination
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Chair of the Doctorate committee of the PhD-defense of Irving van Heuven van Staereling, 20 September 2023, Vrije Universiteit
Leen Stougie (Examiner)
20 Sept 2023Activity: PhD thesis Examination › PhD thesis examination
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Scheduling over scenarios
Leen Stougie (Speaker)
5 Jun 2023 → 6 Jun 2023Activity: Lecture / Presentation › Academic
Prizes / Grants
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COFUND European Commission Marie Skłodowska-Curie Actions grant for project NETWORKS
Stougie, Leen (Recipient), 2020
Prize / Grant: Grant › Academic
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EU Horizon 2020 Research and Innovation Staff Exchange programme under the Marie Skłodowska-Curie grant to PANGAIA
Stougie, Leen (Recipient), 2020
Prize / Grant: Grant › Academic
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Marie Curie Itn Grant awarded to Alpaca Network
Stougie, Leen (Recipient), 11 Jun 2020
Prize / Grant: Grant › Academic
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NWO-GROOT grant for OPTIMAL project
Stougie, Leen (Recipient), 2 Jun 0001
Prize / Grant: Grant › Academic
Datasets
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Additional file 4 of Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2
Kelk, S. (Contributor), Stougie, L. (Contributor), Wallin, R. (Contributor) & van Iersel, L. (Contributor), figshare Academic Research System, 1 Jan 2021
DOI: 10.6084/m9.figshare.17141014.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Applicability_of_several_rooted_phylogenetic_network_algorithms_for_representing_the_evolutionary_history_of_SARS-CoV-2/17141014/1
Dataset / Software: Dataset
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MOESM1 of Enumeration of minimal stoichiometric precursor sets in metabolic networks
Andrade, R. (Creator), Wannagat, M. (Creator), Klein, C. C. (Creator), Acuña, V. (Contributor), Marchetti-Spaccamela, A. (Creator), Milreu, P. V. (Creator), Stougie, L. (Creator) & Sagot, M. (Contributor), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3618026_d1, https://figshare.com/articles/MOESM1_of_Enumeration_of_minimal_stoichiometric_precursor_sets_in_metabolic_networks/4384427
Dataset / Software: Dataset
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Additional file 2 of Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2
Stougie, L. (Contributor), Kelk, S. (Contributor), Wallin, R. (Contributor) & van Iersel, L. (Contributor), figshare Academic Research System, 1 Jan 2021
DOI: 10.6084/m9.figshare.17141005.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Applicability_of_several_rooted_phylogenetic_network_algorithms_for_representing_the_evolutionary_history_of_SARS-CoV-2/17141005/1
Dataset / Software: Dataset
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MOESM1 of Enumeration of minimal stoichiometric precursor sets in metabolic networks
Andrade, R. (Contributor), Wannagat, M. (Contributor), Klein, C. (Contributor), AcuĂąa, V. (Contributor), Marchetti-Spaccamela, A. (Contributor), Milreu, P. (Contributor), Stougie, L. (Contributor) & Sagot, M. (Contributor), Unknown Publisher, 19 Sept 2016
DOI: 10.6084/m9.figshare.c.3618026_d1.v1, https://springernature.figshare.com/articles/dataset/MOESM1_of_Enumeration_of_minimal_stoichiometric_precursor_sets_in_metabolic_networks/4384427/1
Dataset / Software: Dataset