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Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Sequence Alignment Medicine & Life Sciences
Chromosome Breakage Medicine & Life Sciences
Molecular Dynamics Simulation Medicine & Life Sciences
Proteins Medicine & Life Sciences
Nucleotides Medicine & Life Sciences
Molecular dynamics Engineering & Materials Science
Colorectal Neoplasms Medicine & Life Sciences
Transcription Factors Medicine & Life Sciences

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Research Output 2015 2018

  • 6 Article
  • 1 Chapter
  • 1 Conference contribution

Motif-Aware PRALINE: Improving the alignment of motif regions: Improving the alignment of motif regions

Dijkstra, M., Bawono, P., Abeln, S., Feenstra, K. A., Fokkink, W. & Heringa, J., 1 Nov 2018, In : PLoS Computational Biology. 14, 11, p. 1-19 19 p., e1006547.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Sequence Alignment
sequence alignment
Alignment
Multiple Sequence Alignment
Benchmarking

The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein

Dijkstra, M. J. J., Fokkink, W. J., Heringa, J., van Dijk, E. & Abeln, S., 17 Nov 2018, In : Molecular Physics. 116, 21-22, p. 3173-3180 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
globules
folding
Molten materials
Hot Temperature
proteins

Detection of structural variants and recurrent breakpoint genes in colorectal adenoma-to-carcinoma progression

van den Broek, E., Dijkstra, M. J. J., Voorham, Q. J. M., Carvalho, B., van de Wiel, M. A., Abeln, S., Meijer, G. A. & Fijneman, R. J. A., Feb 2017, In : Cancer Research. 77

Research output: Contribution to JournalArticleAcademic

Multiple sequence alignment

Bawono, P., Dijkstra, M., Pirovano, W., Feenstra, A., Abeln, S. & Heringa, J., 2017, Methods in Molecular Biology: Volume I: Data, Sequence Analysis, and Evolution. Humana Press Inc, Vol. 1525. p. 167-189 23 p. (Methods in Molecular Biology; vol. 1525).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Sequence Alignment
Sequence Analysis
Proteins
Nucleotides
Research Personnel

ConBind: Motif-aware cross-species alignment for the identification of functional transcription factor binding sites

Lelieveld, S. H., Schütte, J., Dijkstra, M. J. J., Bawono, P., Kinston, S. J., Göttgens, B., Heringa, J. & Bonzanni, N., 5 May 2016, In : Nucleic Acids Research. 44, 8, p. e72

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Sequence Alignment
Transcription Factors
Nucleotides
Binding Sites
Nucleic Acid Regulatory Sequences