Nico van Straalen

prof. dr.

19962019
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Research Output 1996 2019

2019

Antimicrobial activity and carbohydrate metabolism in the bacterial metagenome of the soil-living invertebrate Folsomia candida

Agamennone, V., Le, N. G., van Straalen, N. M., Brouwer, A. & Roelofs, D., 13 May 2019, In : Scientific Reports. 9, p. 1-13 13 p., 7308.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Metagenome
Microbiota
Carbohydrate Metabolism
Invertebrates
Candida

Fate and effects of two pesticide formulations in the invertebrate Folsomia candida using a natural agricultural soil

Simões, T., Novais, S. C., Natal-da-Luz, T., Leston, S., Rosa, J., Ramos, F., Pouca, A. S. V., Freitas, A., Barbosa, J., Roelofs, D., Sousa, J. P., van Straalen, N. M. & Lemos, M. F. L., 20 Jul 2019, In : Science of the Total Environment. 675, p. 90-97 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

glyphosate
tetrachloroisophthalonitrile
Candida
Herbicides
Pesticides

From laboratory to the field: Validating molecular markers of effect in Folsomia candida exposed to a fungicide-based formulation

Simões, T., Novais, S. C., Natal-da-Luz, T., Renaud, M., Leston, S., Ramos, F., Römbke, J., Roelofs, D., van Straalen, N. M., Sousa, J. P. & Lemos, M. F. L., 1 Jun 2019, In : Environment International. 127, p. 522-530 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
fungicide
gene
biomarker
pesticide
morphogenesis

Genome annotation and antimicrobial properties of Bacillus toyonensis VU-DES13, isolated from the Folsomia candida gut

Agamennone, V., van Straalen, J., Brouwer, A., de Boer, T. E., Hensbergen, P. J., Zaagman, N., Braster, M., van Straalen, N. M., Roelofs, D. & Janssens, T. K. S., Mar 2019, In : Entomologia experimentalis et applicata. 167, 3, p. 269-285 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Folsomia candida
anti-infective properties
antibiotic resistance
genome
digestive system

Integrated omics to add ecological relevance to risk assessment of pesticides

da Silva Simões, T. F., 2019, 160 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate

Swart, E., de Boer, T. E., Chen, G., Vooijs, R., van Gestel, C. A. M., van Straalen, N. M. & Roelofs, D., 1 Sep 2019, In : Environmental Pollution. 252, p. 399-408 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Daphnia
Metabolism
Plastics
Candida
Hemoglobin

Using time-lapse omics correlations to integrate toxicological pathways of a formulated fungicide in a soil invertebrate

Simões, T., Novais, S. C., Natal-da-Luz, T., Devreese, B., de Boer, T., Roelofs, D., Sousa, J. P., van Straalen, N. M. & Lemos, M. F. L., Mar 2019, In : Environmental Pollution. 246, p. 845-854 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fungicides
tetrachloroisophthalonitrile
Invertebrates
Toxicology
Soil
2018

An integrative omics approach to unravel toxicity mechanisms of environmental chemicals: effects of a formulated herbicide

Simões, T., Novais, S. C., Natal-da-Luz, T., Devreese, B., de Boer, T., Roelofs, D., Sousa, J. P., van Straalen, N. M. & Lemos, M. F. L., 27 Jul 2018, In : Scientific Reports. 8, p. 1-12 12 p., 11376.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
herbicides
toxicity
glyphosate
proteomics
Folsomia candida

Antimicrobial activity in culturable gut microbial communities of springtails

Agamennone, V., Roelofs, D., van Straalen, N. M. & Janssens, T. K. S., Sep 2018, In : Journal of Applied Microbiology. 125, 3, p. 740-752 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Invertebrates
Soil
Bacteria
Drug Industry
Drug Discovery

Decision-making in a storm of discontent Regulation of pesticides such as glyphosate needs to include societal assessment

Van Straalen, N. M. & Legler, J., 1 Jun 2018, In : Science. 360, 6392, p. 958-960 3 p.

Research output: Contribution to JournalReview articleAcademicpeer-review

glyphosate
pesticide
decision making
European Commission
DDT

Diversity and functions of bacteria associated with springtails

Agamennone, V., 2018, 160 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Exploring DNA methylation patterns in copper exposed Folsomia candida and Enchytraeus crypticus

Noordhoek, J. W., Koning, J., Mariën, J., Kamstra, J., Amorim, M. J. B., van Gestel, C. A. M., van Straalen, N. M. & Roelofs, T. F. M., Jan 2018, In : Pedobiologia. 66, January, p. 52-57

Research output: Contribution to JournalArticleAcademicpeer-review

Enchytraeus
Folsomia candida
methylation
DNA methylation
copper

Factors influencing bioavailability and toxicity of lead in the soil invertebrate Enchytraeus crypticus

Zhang, L., 2018, 194 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
Open Access
File
Plantago
Plantago lanceolata
Phosphorus
mycorrhizal fungi
Fungi

Het madeliefje buigt haar kopje voor de grafiek

van Straalen, N. M., 2018, Tijdrit met de Aarde. Tuininga, E-J. & van Dieren, W. (eds.). Den Haag: Schuttelaar & Partners, p. 160-162 3 p.

Research output: Chapter in Book / Report / Conference proceedingChapterProfessional

Long-term effects of engineered nanomaterials: Soil ecotoxicological and molecular approaches

Noordhoek, J. W., 2018, 140 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Metagenomic analysis of bacterial community structure and diversity of lignocellulolytic bacteria in Vietnamese native goat rumen

Do, T. H., Dao, T. K., Nguyen, K. H. V., Le, N. G., Nguyen, T. M. P., Le, T. L., Phung, T. N., van Straalen, N. M., Roelofs, D. & Truong, N. H., May 2018, In : Asian-Australasian journal of animal sciences. 31, 5, p. 738-747 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Bacteroidetes
Bacterial Structures
Metagenomics
Firmicutes
Rumen

Metagenomic insights into lignocellulose-degrading genes through Illuminabased de novo sequencing of the microbiome in vietnamese native goats’ rumen

Do, T. H., Le, N. G., Dao, T. K., Nguyen, T. M. P., Le, T. L., Luu, H. L., Nguyen, K. H. V., Nguyen, V. L., Le, L. A., Phung, T. N., van Straalen, N. M., Roelofs, D. & Truong, N. H., Mar 2018, In : The Journal of general and applied microbiology. 64, 3, p. 108-116 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Metagenomics
Microbiota
Rumen
Goats
Open Reading Frames

No effect of selected engineered nanomaterials on reproduction and survival of the springtail Folsomia candida

Noordhoek, J. W., Verweij, R. A., van Gestel, C. A. M., van Straalen, N. M. & Roelofs, D., Feb 2018, In : Environmental Science: Nano. 5, 2, p. 564-571 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Candida
Nanostructured materials
toxicity
Soils
Toxicity

Phenotypic and transcriptional responses associated with multi-generation exposure of Folsomia candida to engineered nanomaterials

Noordhoek, J. W., Pipicelli, F., Barone, I., Franken, O., Montagne-Wajer, K., Marien, J., Verweij, R. A., van Gestel, C. A. M., van Straalen, N. M. & Roelofs, D., 1 Oct 2018, In : ENVIRONMENTAL SCIENCE-NANO. 5, 10, p. 2426-2439

Research output: Contribution to JournalArticleAcademicpeer-review

The naked ape as an evolutionary model, 50 years later

van Straalen, N. M., Sep 2018, In : Animal Biology. 68, 3, p. 227-246 20 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Pongidae
hair
natural selection
trichomes
brain

The pesticide problem at the end of organization

van Straalen, N. M., 2018, The End of Organization: Liber Amicorum in Honour of Peter Groenewegen. Moser, C. (ed.). Amsterdam: Uitgave in eigen beheer, p. 83-88 6 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

File

Toward harmonizing ecotoxicity characterization in life cycle impact assessment

Fantke, P., Aurisano, N., Bare, J., Backhaus, T., Bulle, C., Chapman, P. M., De Zwart, D., Dwyer, R., Ernstoff, A., Golsteijn, L., Holmquist, H., Jolliet, O., McKone, T. E., Owsianiak, M., Peijnenburg, W., Posthuma, L., Roos, S., Saouter, E., Schowanek, D., van Straalen, N. M. & 2 othersVijver, M. G. & Hauschild, M., Dec 2018, In : Environmental toxicology and chemistry. 37, 12, p. 2955-2971 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Life Cycle Stages
Life cycle
life cycle
Ecosystems
Ecosystem
2017

Coping with living in the soil: the genome of the parthenogenetic springtail Folsomia candida

Faddeeva-Vakhrusheva, A., Kraaijeveld, K., Derks, M. F. L., Anvar, S. Y., Agamennone, V., Suring, W., Kampfraath, A. A., Ellers, J., Le Ngoc, G., van Gestel, C. A. M., Mariën, J., Smit, S., van Straalen, N. M. & Roelofs, D., 28 Jun 2017, In : BMC Genomics. 18, 493.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Candida
Soil
Genome
Multigene Family
Wolbachia

Draft genome sequence of Bacillus toyonensis VU-DES13, isolated from Folsomia candida (Collembola: Entomobryidae)

Janssens, T. K. S., de Boer, T. E., Agamennone, V., Zaagman, N., van Straalen, N. M. & Roelofs, T. F. M., 2017, In : Genome Announcements. 5, 19, 2 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Candida
Bacillus
Lactams
Genome
Oomycetes

Evolutionary ecology of beta-lactam gene clusters in animals

Suring, W., Meusemann, K., Blanke, A., Mariën, J., Schol, T., Agamennone, V., Faddeeva-Vakhrusheva, A., Berg, M. P., Brouwer, A., van Straalen, N. M., Roelofs, D. & 1KITE Basal Hexapod consortium, Jun 2017, In : Molecular Ecology. 26, 12, p. 3217-3229 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

beta-lactams
beta-Lactams
Multigene Family
Ecology
multigene family

Hacking the genomes of soil arthropods

Faddeeva-Vakhrusheva, A., 2017, Off Page. 104 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

It's all microbes in the tree of life

van Straalen, N. M., 2017, Mighty Microbes. van Doorn, J., Luirink, J., van der Oost, J., Oudega, B., Robertson, L., Smit, H., Willemsen, P. & Biermans, C. (eds.). Microcanon Foundation, p. 14-16

Research output: Chapter in Book / Report / Conference proceedingChapterAcademic

Love at first sniff: a spermatophore-associated pheromone mediates partner attraction in a collembolan species

Zizzari, Z. V., Engl, T., Lorenz, S., van Straalen, N. M., Ellers, J. & Groot, A. T., 1 Feb 2017, In : Animal Behaviour. 124, p. 221-227

Research output: Contribution to JournalArticleAcademicpeer-review

spermatophore
spermatophores
Collembola
pheromone
pheromones

Multiple mating in natural populations of a simultaneous hermaphrodite, Lymnaea stagnalis

Nakadera, Y., Mariën, J., Van Straalen, N. M. & Koene, J. M., 2017, In : Journal of Molluscan Studies. 83, 1, p. 56-62 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

multiple mating
natural mating
Lymnaea stagnalis
hermaphrodite
sexual selection

Priorities for research in soil ecology

et al. (32 authors), 2017, In : Pedobiologia. 63, p. 1-7

Research output: Contribution to JournalArticleAcademicpeer-review

soil ecology
ecology
soil
soil management
ecosystem services

The love-dart story: a struggle for paternity in land snails

Lodi, M., 2017, 178 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Toxicokinetics and time-variable toxicity of cadmium in Oppia nitens Koch (Acari: Oribatida)

Keshavarz Jamshidian, M., Verweij, R. A., van Gestel, C. A. M. & van Straalen, N. M., 1 Feb 2017, In : Environmental Toxicology and Chemistry. 36, 2, p. 408-413

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Cadmium
Toxicity
cadmium
Soil
Mites
2016

Biochemical pathways supporting beta-lactam biosynthesis in the springtail Folsomia candida

Suring, W., Marien, J., Broekman, R. A., van Straalen, N. M. & Roelofs, D., 15 Nov 2016, In : Biology open. 18 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
aminoadipic acid
Folsomia candida
beta-lactams
Candida
Biosynthesis

Changes in soil oribatid communities associated with conversion from conventional to organic agriculture

Khalil, M. A., Al-Assiuty, A-NI., van Straalen, N. M. & Al-Assiuty, B. A., 2016, In : Experimental & Applied Acarology. 68, p. 183-196

Research output: Contribution to JournalArticleAcademicpeer-review

organic production
mite
agriculture
Sarcoptiformes
mites

De bodem in de bio-economie

van Straalen, N. M., 2016, De toekomst van de bodem. Den Haag: Technische Commissie Bodembescherming, p. 53-56

Research output: Chapter in Book / Report / Conference proceedingChapterProfessional

Effect of metal pollution on genetic variation in natural populations of selected soil invertebrate species with different dispersal potential

Giska, I., 2016, Kraków, Poland: AT Wydawnictwo. 160 p.

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File

Gene Family Evolution Reflects Adaptation to Soil Environmental Stressors in the Genome of the Collembolan Orchesella cincta

Faddeeva-Vakhrusheva, A., Derks, M. F. L., Anvar, S. Y., Agamennone, V., Suring, W., Smit, S., van Straalen, N. M. & Roelofs, D., 2016, In : Genome Biology and Evolution. 8, 7, p. 2106-2117

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Mechanisms of phenanthrene toxicity in the soil invertebrate, Enchytraeus crypticus

Roelofs, D., Bicho, R. C., de Boer, T. E., Castro-Ferreira, M. P., Montagne-Wajer, K., van Gestel, C. A. M., Soares, A. M. V. M. & van Straalen, N. M., 2016, In : Environmental Toxicology and Chemistry. 35, 11, p. 2713-2720

Research output: Contribution to JournalArticleAcademicpeer-review

Invertebrates
phenanthrene
Toxicity
Polycyclic Aromatic Hydrocarbons
Soil

Microbial community structure and dynamics in relation to hydrochemistry of surface run-off water from the Jatibarang landfill in Indonesia

Mangimbulude, J. C., van Straalen, N. M. & Röling, W. F. M., 2016, In : Asian Journal of Microbiology, Biotechnology and Environmental Science. 18, 2, p. 367-377

Research output: Contribution to JournalArticleAcademicpeer-review

New tools for assessment of soil toxicity: towards the bio-based economy

Chen, G., 2016, Amsterdam: Off-page BV. 124 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Reflections on the graph representation of Darwinian evolution

van Straalen, N. M. & Gremmen, H. G. J., 2016, Evolution and Transitions in Complexity. The Science of Hierarchical Organization in Complexity. Jagers op Akkerhuis, G. A. J. M. (ed.). Cham, Switzerland: Springer, p. 97-101

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Graph
Darwinism
Definition of Life
Innovation
Thermodynamics

Resilience of soil microbial communities to metals and additional stressors: DNA-Based approaches for assessing "stress-on-stress" responses.

Azarbad, H., van Gestel, C. A. M., Niklinska, M., Laskowski, R., Roling, W. F. M. & van Straalen, N. M., 2016, In : International Journal of Molecular Sciences. 17, 6, E933.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Resilience of Soil Microbial Communities to Metals and Additional Stressors: DNA-Based Approaches for Assessing “Stress-on-Stress” Responses

Azarbad, H., van Gestel, C. A. M., Niklińska, M., Laskowski, R., Röling, W. F. M. & van Straalen, N. M., 2016, In : International Journal of Molecular Sciences. 17, 20 p., 933.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
resilience
soils
DNA
Soil
deoxyribonucleic acid
Toxicity
Candida
toxicity
Soils
Acids

Transgenerational effects of nutrition are different for sons and daughters

Zizzari, Z. V., van Straalen, N. M. & Ellers, J., 2016, In : Journal of Evolutionary Biology. 29, 7, p. 1317-1327

Research output: Contribution to JournalArticleAcademicpeer-review

Orchesella cincta
food availability
nutrition
adverse effects
life history

Vrouw met hermelijn

van Straalen, N. M., 2016, Eigen uitgave. 185 p.

Research output: Book / ReportBookPopular

Wat maagdelijke mijten weten van evolutie

van Straalen, N. M., 2016, In : Entomologische Berichten. 76, p. 63-68

Research output: Contribution to JournalArticleProfessional

2015
Aquatic organisms
Aquatic Organisms
aquatic organism
ligand
Toxicity