Research Output 1977 2018

Filter
Article
2018

Inter-individual variability in activity of the major drug metabolizing enzymes in liver homogenates of 20 Individuals

Vos, J. C., den Braver-Sewradj, S. P., den Braver, M. W., van Dijk, M., Zhang, Y., Dekker, S. J., Wijaya, L., Vermeulen, N. P. E., Richert, L. & Commandeur, J. N. M. 8 Jan 2018 In : Current Drug Metabolism.

Research output: Contribution to journalArticle

Reduction and Scavenging of Chemically Reactive Drug Metabolites by NAD(P)H:Quinone Oxidoreductase 1 and NRH:Quinone Oxidoreductase 2 and Variability in Hepatic Concentrations

den Braver-Sewradj, S. P., den Braver, M. W., Toorneman, R. M., van Leeuwen, S., Zhang, Y., Dekker, S. J., Vermeulen, N. P. E., Commandeur, J. N. M. & Vos, J. C. 19 Feb 2018 In : Chemical Research in Toxicology. 31, 2, p. 116-126 11 p.

Research output: Contribution to journalArticle

2017
Open Access
Open Access

Direct comparison of UDP-glucuronosyltransferase and cytochrome P450 activities in human liver microsomes, plated and suspended primary human hepatocytes from five liver donors

den Braver-Sewradj, S. P., den Braver, M. W., Baze, A., Decorde, J., Fonsi, M., Bachellier, P., Vermeulen, N. P. E., Commandeur, J. N. M., Richert, L. & Vos, J. C. 1 Aug 2017 In : European Journal of Pharmaceutical Sciences. 109, p. 96-110 15 p.

Research output: Contribution to journalArticle

Open Access

eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations

Capoferri, C. L., van Dijk, M., Rustenburg, A. S., Wassenaar, T., Kooi, D. P., Rifai, E. A., Vermeulen, N. P. E. & Geerke, D. P. 2017 In : Journal of Cheminformatics. 9, 58, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access

Legacy data sharing to improve drug safety assessment: the eTOX project

Sanz, F. , Pognan, F. , Steger-Hartmann, T. , Díaz, C. , Cases, M. , Pastor, M. , Marc, P. , Wichard, J. , Briggs, K. , Watson, D. K. , Kleinöder, T. , Yang, C. , Amberg, A. , Beaumont, M. , Brookes, A. J. , Brunak, S. , Cronin, M. T. D. , Ecker, G. F. , Escher, S. , Greene, N. & 17 others Guzmán, A., Hersey, A., Jacques, P., Lammens, L., Mestres, J., Muster, W., Northeved, H., Pinches, M., Saiz, J., Sajot, N., Valencia, A., van der Lei, J., Vermeulen, N. P. E., Vock, E., Wolber, G., Zamora, I. & eTOX Dec 2017 In : Nature Reviews Drug Discovery. 16, 12, p. 811-812 2 p.

Research output: Contribution to journalArticle

The effect of acetaminophen on ubiquitin homeostasis in Saccharomyces cerevisiae

Huseinovic, A., van Leeuwen, J., van Welsem, T., Stulemeijer, I., van Leeuwen, F., Vermeulen, N. P. E., Kooter, J. M. & Vos, J. C. 14 Mar 2017 In : PLoS One. 12, 3, p. 1-19 19 p., e0173573

Research output: Contribution to journalArticle

Open Access
2016

Application of a cocktail approach to screen cytochrome P450 BM3 libraries for metabolic activity and diversity.

Reinen, J. R., Postma, G., Tump, C., Bloemberg, T., Engel, J., Vermeulen, N. P. E., Commandeur, J. N. M. & Honing, M. 2016 In : Analytical and Bioanalytical Chemistry. 408, p. 1425-1443

Research output: Contribution to journalArticle

Open Access

Evidence-based selection of training compounds for use in the mechanism-based integrated prediction of drug-induced liver injury in man.

Dragovic, S., Vermeulen, N. P. E., Gerets, H. H., Hewitt, P. G., Ingelman-Sundberg, M., Park, B. K., Juhila, S., Snoeys, J. & Weaver, R. J. 2016 In : Archives of Toxicology. 90, 12, p. 2979-3003

Research output: Contribution to journalArticle

Open Access
Open Access

Insights into regioselective metabolism of mefenamic acid by cytochrome P450 BM3 mutants through crystallography, docking, molecular dynamics, and free energy calculations.

Capoferri, L., Leth, R., ter Haar, E., Mohanty, A. K., Grootenhuis, P. D. J., Vottero, E. R., Commandeur, J. N. M., Vermeulen, N. P. E., Jorgensen, F. S., Olsen, L. & Geerke, D. P. 2016 In : Proteins. 84, 3, p. 383-396

Research output: Contribution to journalArticle

Response to 'The path forward on endocrine disruptors requires focus"

Autrup, H., Barile, F., Blaauboer, B. J., Degen, G. H., Dekant, W., Dietrich, D., Domingo, J. L., Gori, G. B., Greim, H., Hengstler, J. G., Kacew, S., Marquardt, H., Pelkonen, O., Savolainen, K. & Vermeulen, N. P. E. 2016 In : Toxicological Sciences. 149, 2, p. 273-274

Research output: Contribution to journalArticle

Response to “The Path Forward on Endocrine Disruptors Requires Focus”

Autrup, H., Barile, F. A., Blaauboer, B. J., Degen, G. H., Dekant, W., Dietrich, D., Domingo, J. L., Gori, G. B., Greim, H., Hengstler, J. G., Kacew, S., Marquardt, H., Pelkonen, O., Savolainen, K. & Vermeulen, N. P. Feb 2016 In : Toxicological sciences : an official journal of the Society of Toxicology. 149, 2, p. 273-4 2 p.

Research output: Contribution to journalArticle

2015

Activation of the anticancer drugs cyclophosphamide and ifosfamide by cytochrome P450 BM3 mutants

Vredenburg, G., den Braver-Sewradj, S., van Vugt-Lussenburg, B. M. A., Vermeulen, N. P. E., Commandeur, J. N. M. & Vos, J. C. 5 Jan 2015 In : Toxicology Letters. 232, 1, p. 182-92 11 p.

Research output: Contribution to journalArticle

Biosynthesis of a steroid metabolite by an engineered Rhodococcus erythropolis strain expressing a mutant cytochrome P450 BM3 enzyme

Venkataraman, H., te Poele, E. M., Rosłoniec, K. Z., Vermeulen, N., Commandeur, J. N. M., van der Geize, R. & Dijkhuizen, L. 18 Jun 2015 In : Applied Microbiology and Biotechnology. 99, 11, p. 4713-4721 9 p.

Research output: Contribution to journalArticle

Characterization of human cytochrome P450s involved in the bioactivation of tri-Ortho-Cresyl phosphate (ToCP)

Reinen, J., Nematollahi, L., Fidder, A., Vermeulen, N. P. E., Noort, D. & Commandeur, J. N. M. 20 Apr 2015 In : Chemical Research in Toxicology. 28, 4, p. 711-721 11 p.

Research output: Contribution to journalArticle

Integrative Modeling Strategies for Predicting Drug Toxicities at the eTOX Project

Sanz, F., Carrio, P., Lopez, O., Capoferri, L., Kooi, D. P., Vermeulen, N. P. E., Geerke, D. P., Montanari, F., Ecker, G. F., Schwab, C. H., Kleinoeder, T., Magdziarz, T. & Pastor, M. Jun 2015 In : Molecular Informatics. 34, 6-7, p. 477-484

Research output: Contribution to journalArticle

Linear Interaction Energy Based Prediction of Cytochrome P450 1A2 Binding Affinities with Reliability Estimation

Capoferri, L., Verkade-Vreeker, M. C. A., Buitenhuis, D., Commandeur, J. N. M., Pastor, M., Vermeulen, N. P. E. & Geerke, D. P. 9 Nov 2015 In : PLoS One. 10, 11

Research output: Contribution to journalArticle

Open Access

Mass spectrometric identification of isocyanate-induced modifications of keratins in human skin

Hulst, A. G., Verstappen, D. R. W., Van Der Riet - Van Oeveren, D., Vermeulen, N. P. E. & Noort, D. 22 Jun 2015 In : Chemico-Biological Interactions. 237, p. 141-150 10 p.

Research output: Contribution to journalArticle

Principles of pharmacology and toxicology also govern effects of chemicals on the endocrine system

Autrup, H., Barile, F. A., Blaauboer, B. J., Degen, G. H., Dekant, W., Dietrich, D., Domingo, J. L., Gori, G. B., Greim, H., Hengstler, J. G., Kacew, S., Marquardt, H., Pelkonen, O., Savolainen, K. & Vermeulen, N. P. 1 Jul 2015 In : Toxicological Sciences. 146, 1, p. 11-15 5 p., kfv082

Research output: Contribution to journalArticle

2014

Application of engineered cytochrome P450 mutants as biocatalysts for the synthesis of benzylic and aromatic metabolites of fenamic acid NSAIDs

Venkataraman, H., Verkade-Vreeker, M. C. A., Capoferri, L., Geerke, D. P., Vermeulen, N. P. E. & Commandeur, J. N. M. 15 Oct 2014 In : Bioorganic and Medicinal Chemistry. 22, 20, p. 5613-5620

Research output: Contribution to journalArticle

Human NAD(P)H:quinone oxidoreductase 1 (NQO1)-mediated inactivation of reactive quinoneimine metabolites of diclofenac and mefenamic acid

Vredenburg, G., Elias, N. S., Venkataraman, H., Hendriks, D. F. G., Vermeulen, N. P. E., Commandeur, J. N. M. & Vos, J. C. 21 Apr 2014 In : Chemical Research in Toxicology. 27, 4, p. 576-86 11 p.

Research output: Contribution to journalArticle

Towards automated binding affinity prediction using an iterative linear interaction energy approach

Vosmeer, C. R., Pool, R., van Stee, M. F., Peric-Hassler, L., Vermeulen, N. P. E. & Geerke, D. P. 2014 In : International Journal of Molecular Sciences. 15, 1, p. 798-816 19 p.

Research output: Contribution to journalArticle

Open Access
2013

Characterisation of Human Cytochrome P450s Involved in the Bioactivation of Clozapine

Dragovic, S., Gunness, P., Ingelman-Sundberg, M., Vermeulen, N. P. E. & Commandeur, J. N. M. 2013 In : Drug Metabolism and Disposition. 41, 3, p. 651-658

Research output: Contribution to journalArticle

2012

Active Site Substitution A82W Improves the Regioselectivity of Steroid Hydroxylation by Cytochrome P450 BM3 Mutants As Rationalized by Spin Relaxation Nuclear Magnetic Resonance Studies

Rea, V., Kolkman, A. J., Vottero, E. R., Stronks, E. J., Ampt, K. A., Honing, M., Vermeulen, N. P. E., Wijmenga, S. S. & Commandeur, J. N. M. 2012 In : Biochemistry. 51, 3, p. 750-760

Research output: Contribution to journalArticle

A single active site mutation inverts stereoselectivity of 16-hydroxylation of testosterone catalyzed by engineered cytochrome P450 BM3.

Venkataraman, H., de Beer, S. B., Bergen, L. A., van Essen, N., Geerke, D. P., Vermeulen, N. P. E. & Commandeur, J. N. M. 2012 In : ChemBioChem. 13, 4, p. 520-523

Research output: Contribution to journalArticle