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Personal profile

Ancillary activities

  • Stichting Prelude Foundation | Amsterdam | Penningmeester | 2010-02-15

Ancillary activities are updated daily

Personal information

Research

My research generally involves integrating, modelling and learning from data that has been derived from several sources ranging from high-throughput molecular profiling techniques to atomic force spectroscopy measurements. My focus lies both on mining quantitative data from heterogeneous sources effectively, and modelling such data within the given physical constraints.

Interests

  • Bioinformatics
  • Computational biophysics
  • Data science
  • Protein thermodynamics
  • Mining quantitative data

Keywords

  • Q Science (General)
  • Bioinformatics
  • Data Science
  • Biophysical simulations
  • Data integration

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

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Research Output 2005 2018

  • 35 Article
  • 5 Chapter
  • 2 PhD Thesis - Research VU, graduation VU
  • 1 Conference contribution

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A. 14 May 2018 In : Scientific Reports. 8, 1, p. 7522 7522

Research output: Contribution to journalArticle

Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes

Preface to Introduction to Structural Bioinformatics

Feenstra, K. A. & Abeln, S. 29 Jan 2018 Introduction to Structural Bioinformatics.

Research output: Chapter in Book/Report/Conference proceedingChapter

File

The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein

Dijkstra, M. J. J., Fokkink, W. J., Heringa, J., van Dijk, E. & Abeln, S. 13 Jul 2018 (Accepted/In press) In : Molecular Physics. p. 1-8 8 p.

Research output: Contribution to journalArticle

globules
folding
Molten materials
Hot Temperature
proteins

Training for translation between disciplines: A philosophy for life and data sciences curricula

Anton Feenstra, K., Abeln, S., Westerhuis, J. A., Brancos Dos Santos, F., Molenaar, D., Teusink, B., Hoefsloot, H. C. J. & Heringa, J. 1 Jul 2018 In : Bioinformatics. 34, 13, p. i4-i12 9 p.

Research output: Contribution to journalArticle

Detection of structural variants and recurrent breakpoint genes in colorectal adenoma-to-carcinoma progression

van den Broek, E., Dijkstra, M. J. J., Voorham, Q. J. M., Carvalho, B., van de Wiel, M. A., Abeln, S., Meijer, G. A. & Fijneman, R. J. A. Feb 2017 In : Cancer Research. 77

Research output: Contribution to journalArticle

Prizes

NWO Veni

S. Abeln (Recipient), 2011

Prize: ScientificPrize / Award