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Personal profile

Ancillary activities

  • Stichting Prelude Foundation | Amsterdam | Penningmeester | 2010-02-15

Ancillary activities are updated daily

Personal information

Research

My research generally involves integrating, modelling and learning from data that has been derived from several sources ranging from high-throughput molecular profiling techniques to atomic force spectroscopy measurements. My focus lies both on mining quantitative data from heterogeneous sources effectively, and modelling such data within the given physical constraints.

Interests

  • Bioinformatics
  • Computational biophysics
  • Data science
  • Protein thermodynamics
  • Mining quantitative data

Keywords

  • Q Science (General)
  • Bioinformatics
  • Data Science
  • Biophysical simulations
  • Data integration

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

  • 3 Similar Profiles
Proteins Medicine & Life Sciences
Fold Mathematics
Genes Chemical Compounds
Genome Medicine & Life Sciences
Protein Mathematics
Pathway Mathematics
Sequence Alignment Medicine & Life Sciences
Taxonomies Chemical Compounds

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Research Output 2005 2018

  • 33 Article
  • 5 Chapter
  • 2 PhD Thesis - Research VU, graduation VU
  • 1 Conference contribution

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A. 14 May 2018 In : Scientific Reports. 8, 1, p. 7522 7522

Research output: Contribution to journalArticle

Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes

Preface to Introduction to Structural Bioinformatics

Feenstra, K. A. & Abeln, S. 29 Jan 2018 Introduction to Structural Bioinformatics.

Research output: Chapter in Book/Report/Conference proceedingChapter

File

Detection of structural variants and recurrent breakpoint genes in colorectal adenoma-to-carcinoma progression

van den Broek, E., Dijkstra, M. J. J., Voorham, Q. J. M., Carvalho, B., van de Wiel, M. A., Abeln, S., Meijer, G. A. & Fijneman, R. J. A. Feb 2017 In : Cancer Research. 77

Research output: Contribution to journalArticle

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

Fijneman, R. J. A., van den Broek, E., van Lieshout, S., Rausch, C., Ylstra, B., van de Wiel, M. A., Meijer, G. A. & Abeln, S. 6 Jul 2017 In : F1000Research. 5, p. 1-8 8 p., 2340

Research output: Contribution to journalArticle

Open Access
Aberrations
Chromosome Aberrations
Genes
Genome
DNA

Introduction to Protein Structure Prediction

Abeln, S., Heringa, J. & Feenstra, K. A. 1 Dec 2017 (Submitted) Introduction to Structural Bioinformatics.

Research output: Chapter in Book/Report/Conference proceedingChapter

File
Proteins