Research output per year
Research output per year
Personal profile
Ancillary activities
- Stichting Prelude Foundation | Amsterdam | Penningmeester | 2010-02-15 - present
Ancillary activities are updated daily
Personal information
Research
My research generally involves integrating, modelling and learning from data that has been derived from several sources ranging from high-throughput molecular profiling techniques to atomic force spectroscopy measurements. My focus lies both on mining quantitative data from heterogeneous sources effectively, and modelling such data within the given physical constraints.
Interests
- Bioinformatics
- Computational biophysics
- Data science
- Protein thermodynamics
- Mining quantitative data
Keywords
- Q Science (General)
- Bioinformatics
- Data Science
- Biophysical simulations
- Data integration
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Research output
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The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
van Gils, J. H. M., van Dijk, E., Peduzzo, A., Hofmann, A., Vettore, N., Schützmann, M. P., Groth, G., Mouhib, H., Otzen, D. E., Buell, A. K. & Abeln, S., 4 May 2020, In : PLoS Computational Biology. 16, 5, 25 p., e1007767.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Abstract 1738: Characterization of structural variants within MACROD2 in the pathogenesis of colorectal cancer
Fijneman, R. J. A., Mekkes, N., Broek, E. V. D., Stringer, B., Glas, R. A., Komor, M. A., Rausch, C., Lieshout, S. V., Cuppen, E., Smith, M. L., Sebra, R. P., Rowell, W. J., Ashby, M., Carvalho, B., Heringa, J., Meijer, G. A. & Abeln, S., 1 Jul 2019. 1 p.Research output: Contribution to Conference › Paper › Academic
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Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using consdyn enhanced sampling [version 1; peer review: 1 approved with reservations, 1 not approved]
Mouhib, H., Higuchi, A., Abeln, S., Yura, K. & Feenstra, K. A., 22 Mar 2019, In : F1000Research. 8, p. 1-14 14 p., 322.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Protein three-dimensional structure prediction
Abeln, S., Feenstra, K. A. & Heringa, J., 2019, Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Ranganathan, S. (ed.). Elsevier, Vol. 2. p. 497-511 15 p. (Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics; vol. 1-3).Research output: Chapter in Book / Report / Conference proceeding › Entry for encyclopedia/dictionary › Academic
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SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions
Hou, Q., De Geest, P. F. G., Griffioen, C. J., Abeln, S., Heringa, J. & Feenstra, K. A., 1 Nov 2019, In : Bioinformatics. 35, 22, p. 4794-4796 3 p.Research output: Contribution to Journal › Article › Academic › peer-review
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