Research Output per year
Personal profile
Ancillary activities
- Stichting Prelude Foundation | Amsterdam | Penningmeester | 2010-02-15
Ancillary activities are updated daily
Personal information
Research
My research generally involves integrating, modelling and learning from data that has been derived from several sources ranging from high-throughput molecular profiling techniques to atomic force spectroscopy measurements. My focus lies both on mining quantitative data from heterogeneous sources effectively, and modelling such data within the given physical constraints.
Interests
- Bioinformatics
- Computational biophysics
- Data science
- Protein thermodynamics
- Mining quantitative data
Keywords
- Q Science (General)
- Bioinformatics
- Data Science
- Biophysical simulations
- Data integration
Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.
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Taxonomies
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Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output 2005 2018
Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer
Jacobsen, A., Bosch, L. J. W., Martens-De Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., De Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A., 14 May 2018, In : Scientific Reports. 8, 1, p. 7522 7522Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Aurora Kinase A
Colorectal Neoplasms
Cell Line
Protein Interaction Maps
Genes
Motif-Aware PRALINE: Improving the alignment of motif regions
Dijkstra, M., Bawono, P., Abeln, S., Feenstra, K. A., Fokkink, W. & Heringa, J., 1 Nov 2018, In : PLoS Computational Biology. 14, 11, p. e1006547Research output: Contribution to Journal › Article › Academic › peer-review
Sequence Alignment
sequence alignment
Alignment
Multiple Sequence Alignment
Benchmarking
Preface to Introduction to Structural Bioinformatics
Feenstra, K. A. & Abeln, S., 29 Jan 2018, Introduction to Structural Bioinformatics.Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic
File
The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein
Dijkstra, M. J. J., Fokkink, W. J., Heringa, J., van Dijk, E. & Abeln, S., 13 Jul 2018, (Accepted/In press) In : Molecular Physics. p. 1-8 8 p.Research output: Contribution to Journal › Article › Academic › peer-review
globules
folding
Molten materials
Hot Temperature
proteins
Training for translation between disciplines: A philosophy for life and data sciences curricula
Anton Feenstra, K., Abeln, S., Westerhuis, J. A., Brancos Dos Santos, F., Molenaar, D., Teusink, B., Hoefsloot, H. C. J. & Heringa, J., 1 Jul 2018, In : Bioinformatics. 34, 13, p. i4-i12 9 p.Research output: Contribution to Journal › Article › Academic › peer-review