Personal profile

Ancillary activities

  • Stichting Prelude Foundation | Amsterdam | Penningmeester | 2010-02-15

Ancillary activities are updated daily

Personal information

Research

My research generally involves integrating, modelling and learning from data that has been derived from several sources ranging from high-throughput molecular profiling techniques to atomic force spectroscopy measurements. My focus lies both on mining quantitative data from heterogeneous sources effectively, and modelling such data within the given physical constraints.

Interests

  • Bioinformatics
  • Computational biophysics
  • Data science
  • Protein thermodynamics
  • Mining quantitative data

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Research Output 2005 2018

  • 33 Article
  • 5 Chapter
  • 2 PhD Thesis - Research VU, graduation VU
  • 1 Conference contribution

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

Jacobsen, A., Bosch, L. J. W., Martens-de Kemp, S. R., Carvalho, B., Sillars-Hardebol, A. H., Dobson, R. J., de Rinaldis, E., Meijer, G. A., Abeln, S., Heringa, J., Fijneman, R. J. A. & Feenstra, K. A. 14 May 2018 In : Scientific Reports. 8, 1, p. 7522

Research output: Contribution to journalArticle

Preface to Introduction to Structural Bioinformatics

Feenstra, K. A. & Abeln, S. 29 Jan 2018 Introduction to Structural Bioinformatics.

Research output: Chapter in Book/Report/Conference proceedingChapter

File

Detection of structural variants and recurrent breakpoint genes in colorectal adenoma-to-carcinoma progression

van den Broek, E., Dijkstra, M. J. J., Voorham, Q. J. M., Carvalho, B., van de Wiel, M. A., Abeln, S., Meijer, G. A. & Fijneman, R. J. A. Feb 2017 In : Cancer Research. 77

Research output: Contribution to journalArticle

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

Fijneman, R. J. A., van den Broek, E., van Lieshout, S., Rausch, C., Ylstra, B., van de Wiel, M. A., Meijer, G. A. & Abeln, S. 6 Jul 2017 In : F1000Research. 5, p. 1-8 8 p., 2340

Research output: Contribution to journalArticle

Open Access

Introduction to Protein Structure Prediction

Abeln, S., Heringa, J. & Feenstra, K. A. 1 Dec 2017 (Submitted) Introduction to Structural Bioinformatics.

Research output: Chapter in Book/Report/Conference proceedingChapter

File