Research output per year
Research output per year
Personal profile
Ancillary activities
- Stichting Prelude Foundation | Amsterdam | Penningmeester | 2010-02-15 - present
Ancillary activities are updated daily
Personal information
Research
My research generally involves integrating, modelling and learning from data that has been derived from several sources ranging from high-throughput molecular profiling techniques to atomic force spectroscopy measurements. My focus lies both on mining quantitative data from heterogeneous sources effectively, and modelling such data within the given physical constraints.
Interests
- Bioinformatics
- Computational biophysics
- Data science
- Protein thermodynamics
- Mining quantitative data
Keywords
- Q Science (General)
- Bioinformatics
- Data Science
- Biophysical simulations
- Data integration
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Research output
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Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language
Crusoe, M. R., Abeln, S., Iosup, A., Amstutz, P., Chilton, J., Tijanić, N., Ménager, H., Soiland-Reyes, S. & Goble, C., 4 Aug 2021, In: arXiv. 2021, p. 1-11 11 p.Research output: Contribution to Journal › Article › Academic
Open AccessFile54 Downloads (Pure) -
The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
van Gils, J. H. M., van Dijk, E., Peduzzo, A., Hofmann, A., Vettore, N., Schützmann, M. P., Groth, G., Mouhib, H., Otzen, D. E., Buell, A. K. & Abeln, S., 4 May 2020, (E-pub ahead of print) In: PLoS Computational Biology. 16, 5, 25 p., e1007767.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation
van Dijk, E., Varilly, P., Knowles, T. P. J., Frenkel, D. & Abeln, S., 19 Feb 2016, In: Physical Review Letters. 116, 7, p. 078101Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures
van Dijk, E., Hoogeveen, A. & Abeln, S., 1 May 2015, In: PLoS Computational Biology. 11, 5, e1004277.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access -
High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer
van den Broek, E., Dijkstra, M. J. J., Krijgsman, O., Sie, D. L. S., Haan, J. C., Traets, J. J. H., van de Wiel, M. A., Nagtegaal, I. D., Punt, C. J. A., Carvalho, B., Ylstra, B., Abeln, S., Meijer, G. A. & Fijneman, R. J. A., 2015, In: PLoS ONE. 10, 9, e0138141.Research output: Contribution to Journal › Article › Academic › peer-review
Open Access
Projects
- 1 Active
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Delineating entropic contributions in beta-strand formation.
Abeln, S., Hashemi Shabestari, M. & van Gils, J.
1/08/18 → 30/09/22
Project: Research