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Research Output 2007 2019

2019

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Wilkinson, M. D., Dumontier, M., Jan Aalbersberg, I., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J. W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 othersGray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., Hoen, P. A. C. T., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S. A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Jan Velterop, V., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 19 Mar 2019, In : Scientific Data. 6, p. 1-1 1 p., 6.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2018

DeSemWeb 2018. Decentralizing the Semantic: WebProceedings of the 2nd workshop on decentralizing the semantic web colocated with the 17th International Semantic Web Conference (ISWC 2018)

Verborgh, R. (ed.), Kuhn, T. (ed.) & BernersLee, T. (ed.), 2018, CEUR-WS. (CEUR Workshop Proceedings; vol. 2165)

Research output: Book / ReportBook editingAcademic

Nanopublications: A growing resource of provenance-centric scientific linked data

Kuhn, T., Merono-Penuela, A., Malic, A., Poelen, J. H., Hurlbert, A. H., Ortiz, E. C., Furlong, L. I., Queralt-Rosinach, N., Chichester, C., Banda, J. M., Willighagen, E., Ehrhart, F., Evelo, C., Malas, T. B. & Dumontier, M., 24 Dec 2018, Proceedings - IEEE 14th International Conference on eScience, e-Science 2018. Institute of Electrical and Electronics Engineers Inc., p. 83-92 10 p. 8588643

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Linked Data
Provenance
provenance
Resources
Life sciences
2017

Computational Controversy

Timmermans, B., Kuhn, T., Beelen, K. & Aroyo, L., 23 Jun 2017, In : Lecture Notes in Computer Science. 10540

Research output: Contribution to JournalArticleAcademicpeer-review

Social sciences
Social Sciences
Wikipedia
Vaccination
Climate Change

ControCurator: Understanding Controversy Using Collective Intelligence

Timmermans, B., Aroyo, L., Kuhn, T., Beelen, K., Kanoulas, E., van de Velde, B. & van Eerten, G., 2017, In : Collective Intelligence.

Research output: Contribution to JournalArticleAcademicpeer-review

Data Science--Methods, infrastructure, and applications

Dumontier, M. & Kuhn, T., 2017, In : Data Science. 1, 1-2

Research output: Contribution to JournalArticleAcademic

Extracting Core Claims from Scientific Articles

Jansen, T. & Kuhn, T., 24 Jul 2017, In : Postproceedings of the Benelux Conference on Artificial Intelligence (BNAIC) 2016. 2016, p. 32-46

Research output: Contribution to JournalArticleAcademicpeer-review

Communication
Compliance

Genuine semantic publishing

Kuhn, T. & Dumontier, M., 2017, In : Data Science. Preprint, p. 1-16 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

LRE journal CNL introduction

Davis, B., Kuhn, T. & Kaljurand, K., 1 Mar 2017, In : Language Resources and Evaluation. 51, 1, p. 9-11 3 p.

Research output: Contribution to JournalEditorialAcademicpeer-review

Proceedings of the Workshop on Decentralizing the Semantic Web

Verborgh, R., Kuhn, T. (ed.) & Sambra, A. (ed.), 2017, CEUR-WS.

Research output: Book / ReportBook editingAcademic

Reliable Granular References to Changing Linked Data

Kuhn, T., Willighagen, E., Evelo, C. T., Queralt-Rosinach, N., Centeno, E. & Furlong, L. I., 30 Aug 2017, In : Proceedings of the 16th International Semantic Web Conference (ISWC) 2017. p. 436-451

Research output: Contribution to JournalArticleAcademicpeer-review

File
provenance
metadata
explosion
persistence
history

Understanding knowledge networks

Mangaladevi, K., Beek, W. & Kuhn, T., 2017, In : CEUR Workshop Proceedings. 1946, p. 38-49 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Electronic mail
Terminology
Ontology
Structural properties
Proteins
2016

Data 2 documents: Modular and distributive content management in RDF

Ockeloen, N., de Boer, V., Kuhn, T. & Schreiber, G., 2016, Knowledge Engineering and Knowledge Management - 20th International Conference, EKAW 2016, Proceedings. Springer - Verlag, Vol. 10024 LNAI. p. 447-462 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10024 LNAI).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ontology
Anomaly
Ontology Engineering
Web-based
Correctness

Decentralized provenance-aware publishing with nanopublications

Kuhn, T., Chichester, C., Krauthammer, M., Queralt-Rosinach, N., Verborgh, R., Giannakopoulos, G., Ngonga Ngomo, A-C., Viglianti, R. & Dumontier, M., 22 Aug 2016, In : PeerJ Computer Science. 2, p. e78

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
provenance
researchers
Publications
Semantic Web
Semantics

Fully automatic multi-language translation with a catalogue of phrases – successful employment for the Swiss avalanche bulletin

Winkler, K. & Kuhn, T., 2016, In : Language Resources and Evaluation. 51, 1, p. 13-35

Research output: Contribution to JournalArticleAcademicpeer-review

File
bulletin
Swiss
language
French language
costs

Nanopub-Java: A Java library for nanopublications

Kuhn, T., 2016, In : CEUR Workshop Proceedings. 1572, p. 19-25 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Servers

Publishing DisGeNET as nanopublications

Queralt-Rosinach, N., Kuhn, T., Chichester, C., Dumontier, M., Sanz, F. & Furlong, L. I., 23 Jun 2016, In : Semantic Web. 7, 5, p. 519-528 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Semantics
Metadata
Data mining
Data structures
Genes

The controlled natural language of Randall Munroe’s Thing Explainer

Kuhn, T., 2016, Controlled Natural Language - 5th International Workshop, CNL 2016, Proceedings. Springer/Verlag, Vol. 9767. p. 102-110 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9767).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Jet engines
Solar system
Nuclear reactors
Thing
Natural Language

The FAIR Guiding Principles for scientific data management and stewardship

Wilkinson, M. D., Dumontier, M., Aalbersberg, IJ. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J-W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 othersGray, A. J. G., Groth, P. T., Goble, C., Grethe, J. S., Heringa, J., ’t Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 15 Mar 2016, In : Scientific Data. 3, 160018.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Reusability
Data Management
Information management
management
Reuse
2015

Collaborative multilingual knowledge management based on controlled natural language

Kaljurand, K., Kuhn, T. & Canedo, L., 2015, In : Semantic Web. 6, 3, p. 241-258 18 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Knowledge management
Ontology
Semantics
Knowledge representation
User interfaces

Making Digital Artifacts on the Web Verifiable and Reliable

Kuhn, T. & Dumontier, M., 7 Jul 2015, In : IEEE Transactions on Knowledge and Data Engineering.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Network protocols

Provenance-Centered Dataset of Drug-Drug Interactions

Banda, J. M., Kuhn, T., Shah, N. H. & Dumontier, M., 2015, Proceedings of the 14th International Semantic Web Conference (ISWC 2015).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

File
Drug interactions
Data mining
Decision making
Health

Publishing without Publishers: a Decentralized Approach to Dissemination, Retrieval, and Archiving of Data

Kuhn, T., Chichester, C., Krauthammer, M. & Dumontier, M., 2015, Proceedings of the 14th International Semantic Web Conference (ISWC 2015).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

File
top-down control
evaluation
method
science

Science Bots: A Model for the Future of Scientific Computation?

Kuhn, T., 15 Mar 2015, WWW 2015 Companion Proceedings.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access
File
reputation
science
data quality
trend
2014

A Survey and Classification of Controlled Natural Languages

Kuhn, T., 2014, In : Computational Linguistics. 40, 1, p. 121-170 50 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Formal languages
Terminology
language
Communication
Language

Inheritance patterns in citation networks reveal scientific memes

Kuhn, T., Perc, M. & Helbing, D., 2014, In : Physical Review X. 4, 4, 041036.

Research output: Contribution to JournalArticleAcademicpeer-review

linguistics
genes
occurrences
filters
thresholds

Mining images in biomedical publications: Detection and analysis of gel diagrams

Kuhn, T., Nagy, M. L., Luong, T. B. & Krauthammer, M., 25 Apr 2014, In : Journal of Biomedical Semantics. 5, 1, p. 10

Research output: Contribution to JournalArticleAcademicpeer-review

Publications
Gels
Proteins
Workflow
Names

Verifiable source code documentation in controlled natural language

Kuhn, T. & Bergel, A., 15 Dec 2014, In : Science of Computer Programming. 96, P1, p. 121-140 20 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Formal languages
Engines
Defects
Experiments
2013

A multilingual semantic wiki based on attempto controlled english and grammatical framework

Kaljurand, K. & Kuhn, T., 11 Mar 2013, The Semantic Web: Semantics and Big Data - 10th International Conference, ESWC 2013, Proceedings. Vol. 7882 LNCS. p. 427-441 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7882 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Grammar
Natural Language
Semantics
Ontology
Engines

A Principled Approach to Grammars for Controlled Natural Languages and Predictive Editors

Kuhn, T., 2013, In : Journal of Logic, Language and Information. 22, 1, p. 33-70 38 p.

Research output: Contribution to JournalArticleAcademicpeer-review

grammar
editor
Formal logic
Knowledge representation
language

Broadening the scope of nanopublications

Kuhn, T., Barbano, P. E., Nagy, M. L. & Krauthammer, M., 11 Mar 2013, The Semantic Web: Semantics and Big Data - 10th International Conference, ESWC 2013, Proceedings. Vol. 7882 LNCS. p. 487-501 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7882 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Syntactics
Semantics
Information Sharing
Assertion
Range of data

The understandability of OWL statements in controlled English

Kuhn, T., 2013, In : Semantic Web. 4, 1, p. 101-115 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Semantic Web
Experiments
2012

Codeco: A practical notation for controlled English grammars in predictive editors

Kuhn, T., 2012, Controlled Natural Language - Second International Workshop, CNL 2010, Revised Papers. Vol. 7175 LNAI. p. 95-114 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7175 LNAI).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Grammar
Natural Language
Notation
Formal Languages
Prolog

Coral: Corpus access in controlled language

Kuhn, T. & Höfler, S., Nov 2012, In : Corpora. 7, 2, p. 187-206 20 p.

Research output: Contribution to JournalArticleAcademicpeer-review

language
editor
functionality
experiment
Controlled

Finding and accessing diagrams in biomedical publications.

Kuhn, T., Luong, T. & Krauthammer, M., 2012, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2012, p. 468-474 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Search Engine
Publications
Technology
Datasets

Underspecified scientific claims in nanopublications

Kuhn, T. & Krauthammer, M., 7 Sep 2012, In : CEUR Workshop Proceedings. 906, p. 29-32 4 p.

Research output: Contribution to JournalArticleAcademicpeer-review

2011

Codeco: A grammar notation for controlled natural language in predictive editors

Kuhn, T., 29 Mar 2011, In : CEUR Workshop Proceedings. 622

Research output: Contribution to JournalArticleAcademicpeer-review

2010

An evaluation framework for controlled natural languages

Kuhn, T., 2010, Controlled Natural Language - Workshop on Controlled Natural Language, CNL 2009, Revised Papers. Springer, Vol. 5972 LNAI. p. 1-20 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5972 LNAI).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Formal languages
Knowledge representation
Natural Language
Formal Languages
Evaluation
2009

AceWiki: A natural and expressive semantic wiki

Kuhn, T., 2009, In : CEUR Workshop Proceedings. 543

Research output: Contribution to JournalArticleAcademicpeer-review

Semantics
Formal languages
Semantic Web

Controlled natural language for clinical practice guidelines?

Shiffman, R. N., Michel, G., Krauthammer, M., Fuchs, N. E., Kaljurand, K. & Kuhn, T., 1 Apr 2009, In : CEUR Workshop Proceedings. 448

Research output: Contribution to JournalArticleAcademicpeer-review

Pediatrics
Decision support systems
Engineers

How controlled english can improve semantic wikis

Kuhn, T., 7 Jul 2009, In : CEUR Workshop Proceedings. 464, p. 1-16 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Semantics

How to evaluate controlled natural languages

Kuhn, T., 1 Apr 2009, In : CEUR Workshop Proceedings. 448

Research output: Contribution to JournalArticleAcademicpeer-review

Experiments
2008

AceWiki: Collaborative ontology management in controlled natural language

Kuhn, T., 2008, In : CEUR Workshop Proceedings. 360, p. 94-99 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Ontology
Semantics

AceWiki: Collaborative ontology management in controlled natural language

Kuhn, T., 2008. 6 p.

Research output: Contribution to ConferencePaperAcademic

Ontology
Semantics

Attempto controlled english for knowledge representation

Fuchs, N. E., Kaljurand, K. & Kuhn, T., 2008, Reasoning Web - 4th International Summer School 2008, Tutorial Lectures. Vol. 5224 LNCS. p. 104-124 21 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5224 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Knowledge representation
Knowledge Representation
First-order Logic
Formal languages
Semantic Web

Combining semantic wikis and controlled natural language

Kuhn, T., 2008, In : CEUR Workshop Proceedings. 401

Research output: Contribution to JournalArticleAcademicpeer-review

Ontology
Semantics
2007

AceRules: Executing rules in controlled natural language

Kuhn, T., 2007, Web Reasoning and Rule Systems - First International Conference, RR 2007, Proceedings. Vol. 4524 LNCS. p. 299-308 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4524 LNCS).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Semantic Web
World Wide Web
Natural Language
Web services
Language