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2020

All sparse PCA models are wrong, but some are useful. Part I: Computation of scores, residuals and explained variance

Camacho, J., Smilde, A. K., Saccenti, E. & Westerhuis, J. A., 15 Jan 2020, In : Chemometrics and Intelligent Laboratory Systems. 196, 103907.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Altered mitochondrial metabolism in the insulin resistant heart

Makrecka-Kuka, M., Liepinsh, E., Murray, A. J., Lemieux, H., Dambrova, M., Tepp, K., Puurand, M., Käämbre, T., Han, W. H., de Goede, P., O'Brien, K. A., Turan, B., Tuncay, E., Olgar, Y., Rolo, A. P., Palmeira, C. M., Boardman, N. T., Wüst, R. C. & Larsen, T. S., Mar 2020, In : Acta Physiologica. 228, 3, p. e13430 e13430.

Research output: Contribution to JournalReview articleAcademicpeer-review

Open Access

Ambident Nucleophilic Substitution: Understanding Non-HSAB Behavior through Activation Strain and Conceptual DFT Analyses

Bettens, T., Alonso, M., De Proft, F., Hamlin, T. A. & Bickelhaupt, F. M., 23 Mar 2020, In : Chemistry - A European Journal. 26, 17, p. 3884-3893 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Ambition in the making: analysing the preparation and implementation process of the Nationally Determined Contributions under the Paris Agreement

Röser, F., Widerberg, O., Höhne, N. & Day, T., 20 Apr 2020, In : Climate Policy. 20, 4, p. 415-429 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

AM Fungi Alleviate Phosphorus Limitation and Enhance Nutrient Competitiveness of Invasive Plants via Mycorrhizal Networks in Karst Areas

Shen, K., Cornelissen, J. H. C., Wang, Y., Wu, C., He, Y., Ou, J., Tan, Q., Xia, T., Kang, L., Guo, Y. & Wu, B., 13 May 2020, In : Frontiers in Ecology and Evolution. 8, p. 1-12 12 p., 125.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A minimalistic decision tree for blockchain business cases in healthcare

Kaya, F., Gordijn, J. & Wieringa, R., 30 Mar 2020, PoEM 2019 Forum Practice of Enterprise Modelling 2019 Conference Forum (short papers): Proceedings of the Practice of Enterprise Modelling 2019 Conference Forum (short papers) Luxembourg, Luxembourg, November 27-29, 2019. Feltus, C., Johannesson, P. & Proper, H. A. (eds.). CEUR-WS, p. 16-25 10 p. (CEUR Workshop Proceedings; vol. 2586).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

A Model for Priority Setting in Health Technology Innovation Policy

Sharma, J., Bunders, J. F. G., Zuiderent-Jerak, T. & Regeer, B. J., 19 May 2020, In : Global Clinical Engineering Journal.

Research output: Contribution to JournalArticleAcademicpeer-review

A Model for Priority Setting in Health Technology Innovation Policy

Sharma, J., Bunders, J., Zuiderent-Jerak, T. & Regeer, B., 19 May 2020, In : Global Clinical Engineering Journal.

Research output: Contribution to JournalArticleAcademicpeer-review

A Modeling Environment for Dynamic and Adaptive Network Models Implemented in Matlab

Mohammadi Ziabari, S. S. & Treur, J., 2020, Fourth International Congress on Information and Communication Technology: ICICT 2019, London, Volume 1. Yang, X. S., Sherratt, S., Dey, N. & Joshi, A. (eds.). Springer, Vol. 1. p. 91-111 21 p. (Advances in Intelligent Systems and Computing; vol. 1041).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access

A modeling environment for reified temporal-causal network models

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Cham, Switzerland: Springer International Publishing AG, p. 211-224 14 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access

A Modified Arrhenius Approach to Thermodynamically Study Regioselectivity in Cytochrome P450-Catalyzed Substrate Conversion

Luirink, R. A., Verkade-Vreeker, M. C. A., Commandeur, J. N. M. & Geerke, D. P., 15 May 2020, In : ChemBioChem. 21, 10, p. 1461-1472 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

AMPAR Auxiliary Protein SHISA6 Facilitates Purkinje Cell Synaptic Excitability and Procedural Memory Formation

Peter, S., Urbanus, B. H. A., Klaassen, R. V., Wu, B., Boele, H. J., Azizi, S., Slotman, J. A., Houtsmuller, A. B., Schonewille, M., Hoebeek, F. E., Spijker, S., Smit, A. B. & De Zeeuw, C. I., 14 Apr 2020, In : Cell Reports. 31, 2, 107515.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Amplified Rossby waves enhance risk of concurrent heatwaves in major breadbasket regions

Kornhuber, K., Coumou, D., Vogel, E., Lesk, C., Donges, J. F., Lehmann, J. & Horton, R. M., Jan 2020, In : Nature Climate Change. 10, 1, p. 48-+ 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Amplitude analysis of the B+ →π+π+π- decay

LHCb Collaboration, 21 Jan 2020, In : Physical Review D. 101, 1, p. 1-46 46 p., 012006.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Amsterdamse extravagantie in Nijmegen

van den Belt, C., 18 May 2020

Research output: Online publication or Non-textual formOnline publication or WebsitePopular

Open Access

A Multi-Level Cognitive Architecture for Self-Referencing, Self-Awareness and Self-Interpretation

Treur, J. & Glas, G., 29 Jun 2020, (Accepted/In press) In : Cognitive Systems Research.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A multimodal perspective on MCA: Cues of (possible) metacommunicative awareness

Cienki, A., Apr 2020, Drawing Attention to Metaphor: Case studies across time periods, cultures and modalities. Di Biase-Dyson, C. & Egg, M. (eds.). Amsterdam: John Benjamins Publishing Company, p. 63-92 (Figurative Language and Thought; vol. 5).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

A Munc18-1 mutant mimicking phosphorylation by Down Syndrome-related kinase Dyrk1a supports normal synaptic transmission and promotes recovery after intense activity

Classen, J., Saarloos, I., Meijer, M., Sullivan, P. F. & Verhage, M., 21 Feb 2020, In : Scientific Reports. 10, 1, p. 1-10 10 p., 3181.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

An action research for improving the sustainability assessment framework instruments

Condori-Fernandez, N., Lago, P., Luaces, M. R. & Places, Á. S., 1 Feb 2020, In : Sustainability (Switzerland). 12, 4, p. 1-25 25 p., 1682.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

An Adaptive Cognitive Temporal-Causal Network Model of a Mindfulness Therapy Based on Humor

Mohammadi Ziabari, S. S. & Treur, J., 1 Jan 2020, Information Systems and Neuroscience - NeuroIS Retreat 2019: NeuroIS Retreat 2019. Davis, F. D., Riedl, R., vom Brocke, J., Léger, P-M., Randolph, A. & Fischer, T. (eds.). Springer, p. 189-201 13 p. (Lecture Notes in Information Systemsand Organisation; vol. 32).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access

An Adaptive Computational Fear-Avoidance Model Applied to Genito-Pelvic Pain/Penetration Disorder

van 't Hof, S., Rydin, A. & Treur, J., 29 Jun 2020, (Accepted/In press) Proc. of the 13th International Conference on Brain Informatics, BI'20. Springer International Publishing AG, (Lecture Notes in Computer Science, vol. 12241, Springer Nature Publishers).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access

An Adaptive Computational Network Model for Strange Loops in Political Evolution in Society

Anten, J., Earle, J. & Treur, J., 25 Mar 2020, (Accepted/In press) Proceedings of the 20th International Conference on Computational Science, ICCS'20. Springer International Publishing AG, (Lecture Notes in Computer Science).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access

An Adaptive Network Model for Burnout and Dreaming

Maijer, M., Solak, E. & Treur, J., 25 Mar 2020, (Accepted/In press) Proceedings of the 20th International Conference on Computational Science, ICCS'20. Springer International Publishing AG, (Lecture Notes in Computer Science).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access

An Adaptive Network Model for Pain and Pleasure through Spicy Food and its Desensitization

Choy, M., El Fassi, S. & Treur, J., 28 May 2020, (Accepted/In press) In : Cognitive Systems Research.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

An adaptive priority policy for radiotherapy scheduling

Li, S., Koole, G. & Xie, X., 1 Mar 2020, In : Flexible Services and Manufacturing Journal. 32, 1, p. 154-180 27 p.

Research output: Contribution to JournalArticleAcademicpeer-review

An Adaptive Temporal-Causal Network Model to Analyse Extinction of Communication over Time

Fijen, L. J. J., López González, J. J. & Treur, J., 28 May 2020, (Accepted/In press) In : Cognitive Systems Research.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Analysis of a network’s emerging behaviour via its structure involving its strongly connected components

Treur, J., 1 Jan 2020, Network-Oriented Modeling for Adaptive Networks: Designing Higher-Order Adaptive Biological, Mental and Social Network Models. Treur, J. (ed.). Springer International Publishing AG, p. 281-318 38 p. (Studies in Systems, Decision and Control; vol. 251).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access

Analysis of a predator–prey model with specific time scales:a geometrical approach proving the occurrence of canard solutions

Poggiale, J. C., Aldebert, C., Girardot, B. & Kooi, B. W., 2020, In : Journal of Mathematical Biology. 80, 1-2, p. 39-60 21 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Analysis of Vibrational Circular Dichroism Spectra of Peptides: A Generalized Coupled Oscillator Approach of a Small Peptide Model Using VCDtools

Koenis, M. A. J., Visscher, L., Buma, W. J. & Nicu, V. P., 1 Jan 2020, (Accepted/In press) In : Journal of Physical Chemistry B. 124, 9, p. 1665-1677

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Analytics for bioactivity profiling of complex mixtures with a focus on venoms

Mladic, M., Niessen, W. M. A., Somsen, G. W. & Kool, J., 1 Jan 2020, Snake and spider toxins: methods and protocols. Humana Press Inc., p. 27-49 23 p. (Methods in Molecular Biology; vol. 2068).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Analyzing Differentiable Fuzzy Logic Operators

Krieken, E. V., Acar, E. & Harmelen, F. V., 14 Feb 2020, In : arXiv.org.

Research output: Contribution to JournalArticleAcademic

An Analysis of Current Sustainability of Mexican Cities and Their Exposure to Climate Change

Estrada, F., Velasco, J. A., Martinez-Arroyo, A. & Calderón-Bustamante, O., 12 Mar 2020, In : Frontiers in Environmental Science. 8, p. 1-16 16 p., 25.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

An analysis of soccer referee experiences in France and the Netherlands: Abuse, conflict, and level of support

Webb, T., Dicks, M., Thelwell, R., van der Kamp, J. & Rix-Lievre, G., Feb 2020, In : Sport Management Review. 23, 1, p. 52-65 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

An atypical short-chain dehydrogenase–reductase functions in the relaxation of photoprotective qH in Arabidopsis

Amstutz, C. L., Fristedt, R., Schultink, A., Merchant, S. S., Niyogi, K. K. & Malnoë, A., 13 Feb 2020, In : Nature Plants. 6, 2, p. 154-166 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Anderen begrijpen: Theory of Mind bij kleuters

Translated title of the contribution: Understanding others: Theory of Mind in early childhood educationvan der Wilt, F., van der Steijle, F. & van der Veen, C., 2020, In : De Wereld van het Jonge Kind. 46, 6, p. 6-9 4 p., 1.

Research output: Contribution to JournalArticleProfessional

An ecological momentary intervention incorporating personalised feedback to improve symptoms and social functioning in schizophrenia spectrum disorders

Hanssen, E., Balvert, S., Oorschot, M., Borkelmans, K., van Os, J., Delespaul, P. & Fett, A. K., 1 Feb 2020, In : Psychiatry Research. 284, p. 1-8 8 p., 112695.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A Network of Topographic Maps in Human Association Cortex Hierarchically Transforms Visual Timing-Selective Responses

Harvey, B. M., Dumoulin, S. O., Fracasso, A. & Paul, J. M., 20 Apr 2020, In : Current Biology. 30, 8, p. 1424-1434.e6 18 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A Neuroanatomically Grounded Optimal Control Model of the Compensatory Eye Movement System in Mice

Holland, P. J., Sibindi, T. M., Ginzburg, M., Das, S., Arkesteijn, K., Frens, M. A. & Donchin, O., 25 Mar 2020, In : Frontiers in Systems Neuroscience. 14, p. 1-19 19 p., 13.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A neuron in times of stress: The cell-autonomous and cell non-autonomous unfolded protein response in physiology and tau pathology

van Ziel, A. M., 2020, 200 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VU

Open Access
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An evaluation of citizen science smartphone apps for Inland water quality assessment

Malthus, T. J., Ohmsen, R. & van der Woerd, H. J., 1 May 2020, In : Remote Sensing. 12, 10, p. 1-20 20 p., 1578.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A new age model for the Pliocene of the southern North Sea basin: A multi-proxy climate reconstruction

Dearing Crampton-Flood, E., Noorbergen, L. J., Smits, D., Christine Boschman, R., Donders, T. H., Munsterman, D. K., Ten Veen, J., Peterse, F., Lourens, L. & Sinninghe Damsté, J. S., 12 Mar 2020, In : Climate of the Past. 16, 2, p. 523-541 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

A new approach to data access and research transparency (DART)

Beugelsdijk, S., van Witteloostuijn, A. & Meyer, K. E., 1 Jan 2020, (Accepted/In press) In : Journal of International Business Studies.

Research output: Contribution to JournalEditorialAcademicpeer-review

Open Access

A new approach to explain farmers’ adoption of climate change mitigation measures

Moerkerken, A., Blasch, J., van Beukering, P. & van Well, E., 2020, In : Climatic Change. 159, 1, p. pages 141–161 21 p.

Research output: Contribution to JournalArticleAcademicpeer-review

A new framework for policy evaluation: Targets, marine litter, Italy and the Marine Strategy Framework Directive

Morseletto, P., 2020, In : Marine Policy. 117, 103956.

Research output: Contribution to JournalArticleAcademicpeer-review

A new target for an old enemy: The Cytochrome P450 system from Mycobacterium tuberculosis

Ortega Ugalde, S., 2020, 204 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VU

Open Access
File

An exact approach for cyclic inbound inventory routing in a level production system

Bertazzi, L., Laganà, D., Ohlmann, J. W. & Paradiso, R., 16 Jun 2020, In : European Journal of Operational Research. 283, 3, p. 915-928 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

An Existential Threat Model of Conspiracy Theories

Van Prooijen, J. W., 1 Jan 2020, In : European Psychologist. 25, 1, p. 16-25 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

An expansion formula for type A and Kronecker quantum cluster algebras

Çanakçı, İ. & Lampe, P., 1 Apr 2020, In : Journal of Combinatorial Theory. Series A. 171, p. 1-30 30 p., 105132.

Research output: Contribution to JournalArticleAcademicpeer-review