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  • I.H.M. van Stokkum
2011

A general approach to detect folding intermediates from steady-state and time-resolved fluorescence of single tryptophan-containing proteins

Laptenok, S., Visser, N. V., Engel, R., Westphal, A. H., van Hoek, A., van Mierlo, C. P. M., van Stokkum, I. H. M., van Amerongen, H. & Visser, A. J. W. G., 2011, In : Biochemistry. 50, 17, p. 3441-3450 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Broadband spectral probing revealing ultrafast photochemical branching after ultraviolet excitation of the aqueous phenolate anion

Chen, X., Larsen, D. S., Bradforth, S. E. & van Stokkum, I. H. M., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3807-3819 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Charge Separation is Virtually Irreversible in Photosystem II Core Complexes with Oxidized Primary Quinone Acceptor

van der Weij-de Wit, C. D., Dekker, J. P., van Grondelle, R. & van Stokkum, I. H. M., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3947-3956 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Cofactors Involved in Light-Driven Charge Separation in Photosystem I Identified by Subpicosecond Infrared Spectroscopy

Di Donato, M., Stahl, A. D., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2011, In : Biochemistry. 50, 4, p. 480-490

Research output: Contribution to JournalArticleAcademicpeer-review

Excitation energy transfer dynamics of higher plant Photosystem I light harvesting complexes

Wientjes, I. E., van Stokkum, I. H. M., van Amerongen, H. & Croce, R., 2011, In : Biophysical Journal. 100, p. 1372-1380

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Flow of excitation energy in the cryptophyte light-harvesting antenna phycocyanin 645.

Marin, A., Doust, A. B., Scholes, G. D., Wilk, K. E., Curmi, P. M. G., van Stokkum, I. H. M. & van Grondelle, R., 2011, In : Biophysical Journal. 101, 4, p. 1004-1113

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs

Toh, K. C., Stojkovic, E. A., van Stokkum, I. H. M., Moffat, K. & Kennis, J. T. M., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 25, p. 11985-11997 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Minor Complexes at Work: Light-Harvesting by Carotenoids in the Photosystem II Antenna Complexes CP24 and CP26

Marin, A., Passarini, F., van Stokkum, I. H. M., van Grondelle, R. & Croce, R., 2011, In : Biophysical Journal. 100, 11, p. 2829-2838 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

On the involvement of Single-Bond Rotation in the Primary Photochemistry of Photoactive Yellow Protein

Stahl, A. D., Hospes, M., Singhal, K., van Stokkum, I. H. M., van Grondelle, R., Groot, M. L. & Hellingwerf, K. J., 2011, In : Biophysical Journal. 101, 5, p. 1184-1192

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy

Toh, K. C., Stojkovic, E. A., Rupenyan, A. B., van Stokkum, I. H. M., Salumbides, M., Groot, M. L., Moffat, K. & Kennis, J. T. M., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3778-3786 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Proline 68 Enhances Photoisomerization Yield in Photoactive Yellow Protein

Rupenyan, A. B., Vreede, J., van Stokkum, I. H. M., Hospes, M., Kennis, J. T. M., Hellingwerf, K. J. & Groot, M. L., 2011, In : Journal of Physical Chemistry B. 115, 20, p. 6668-6677 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Proton transfer events in GFP

Di Donato, M., van Wilderen, L. J. G. W., van Stokkum, I. H. M., Cohen Stuart, T. A., Kennis, J. T. M., Hellingwerf, K. J., van Grondelle, R. & Groot, M. L., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 36, p. 16295-16305

Research output: Contribution to JournalArticleAcademicpeer-review

Single and multi-exciton dynamics in aqueous protochlorophyllide aggregates

Sytina, O., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3936-3946 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Site, rate, and mechanism of photoprotective quenching in cyanobacteria.

Tian, L. J., van Stokkum, I. H. M., Koehorst, R. B. M., Jongerius, I., Kirilovsky, D. & van Amerongen, H., 2011, In : Journal of the American Chemical Society. 133, 45, p. 18304-18311

Research output: Contribution to JournalArticleAcademicpeer-review

The Hydrogen-Bond Switch Reaction of the Blrb Bluf Domain of Rhodobacter sphaeroides

Mathes, T., van Stokkum, I. H. M., Bonetti, C., Hegemann, P. & Kennis, J. T. M., 2011, In : Journal of Physical Chemistry B. 115, 24, p. 7963-7971 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy

van Stokkum, I. H. M., Gauden, M., Crosson, S., van Grondelle, R., Moffat, K. & Kennis, J. T. M., 2011, In : Photochemistry and Photobiology. 87, 3, p. 534-541 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

The role of the individual Lhca’s in Photosystem I excitation energy trapping

Wientjes, I. E., van Stokkum, I. H. M., van Amerongen, H. & Croce, R., 2011, In : Biophysical Journal. 101, p. 745-754

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
2012

Disentangling picosecond events that complicate the quantitative use of the calcium sensor YC3.60

Laptenok, S., van Stokkum, I. H. M., Borst, J. W., van Oort, B. F., Visser, A. J. W. G. & van Amerongen, H., 2012, In : Journal of Physical Chemistry B. 116, 9, p. 3013-3020 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Excitation-induced polarization decay in the plant light-harvesting complex LHCII

Marin, A., van Stokkum, I. H. M., Novoderezhkin, V. I. & van Grondelle, R., 2012, In : Journal of Photochemistry and Photobiology A. Chemistry. 234, p. 91-99

Research output: Contribution to JournalArticleAcademicpeer-review

Excited state proton transfer in strongly enhanced GFP (sGFP2)

van Oort, B. F., ter Veer, M. J. T., Groot, M. L. & van Stokkum, I. H. M., 2012, In : Physical Chemistry Chemical Physics - PCCP. 14, 25, p. 8852-8858

Research output: Contribution to JournalArticleAcademicpeer-review

Glotaran: A Java-Based Graphical User Interface for the R Package TIMP

Snellenburg, J. J., Laptenok, S., Seger, R., Mullen, K. M. & van Stokkum, I. H. M., 2012, In : Journal of Statistical Software. 49, 3, p. 1-22

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Hydrogen Bond Switching among Flavin and Amino Acids Determines the Nature of Proton-Coupled Electron Transfer in BLUF Photoreceptors

Mathes, T., Zhu, J., van Stokkum, I. H. M., Groot, M. L., Hegemann, P. & Kennis, J. T. M., 2012, In : Journal of Physical Chemistry Letters. 3, 2, p. 203-208

Research output: Contribution to JournalArticleAcademicpeer-review

Picosecond kinetics of light harvesting and photoprotective quenching in wild-type and mutant phycobilisomes isolated from the cyanobacterium synechocystis PCC 6803

Tian, L., Gwizdala, M. S., van Stokkum, I. H. M., Koehorst, R. B. M., Kirilovsky, D. & van Amerongen, H., 2012, In : Biophysical Journal. 102, p. 1692-1700

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Redox modulation of flavin and tyrosine determines photoinduced proton-coupled electron transfer and photoactivation of BLUF photoreceptors

Mathes, T., van Stokkum, I. H. M., Stierl, M. & Kennis, J. T. M., 2012, In : Journal of Biological Chemistry. 287, p. 31725-31738

Research output: Contribution to JournalArticleAcademicpeer-review

Role of PufX in Photochemical Charge Separation in the RC-LH1 Complex from Rhodobacter sphaeroides: An Ultrafast Mid-IR Pump-Probe Investigation

Stahl, A. D., Crouch, L. I., Jones, M. R., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2012, In : Journal of Physical Chemistry B. 116, 1, p. 434-444

Research output: Contribution to JournalArticleAcademicpeer-review

Spectroscopic characterization of the first ultrafast catalytic intermediate in protochlorophyllide oxidoreductase

Sytina, O., van Stokkum, I. H. M., Heyes, D. J., Hunter, C. N. & Groot, M. L., 2012, In : Physical Chemistry Chemical Physics - PCCP. 14, 2, p. 616-625

Research output: Contribution to JournalArticleAcademicpeer-review

The photophysics of the Orange Carotenoid Protein, a light-powered molecular switch.

Berera, R., van Stokkum, I. H. M., Gwizdala, M. S., Wilson, A., Kirilovsky, D. & van Grondelle, R., 2012, In : Journal of Physical Chemistry B. 116, p. 2568-2574

Research output: Contribution to JournalArticleAcademicpeer-review

2013

Closed Reaction Centers of PS1 Still Can Perform the First Steps of Charge Separation. A Mid IR Pump Probe Study with fs Resolution

Stahl, A. D., Di Donato, M., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2013, Photosynthesis Research for Food, Fuel and the Future. Springer Berlin Heidelberg, p. 127-130

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Early Bacteriopheophytin Reduction in Charge Separation in Reaction Centers of Rhodobacter sphaeroides

Zhu, J., van Stokkum, I. H. M., Paparelli, L., Jones, M. R. & Groot, M. L., 2013, In : Biophysical Journal. 104, 11, p. 2493-2502

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Energy Transfer and Trapping in Red-Chlorophyll-Free Photosystem I from Synechococcus WH 7803

van Stokkum, I. H. M., Desquilbet, T. E., van der Weij-de Wit, C. D., Snellenburg, J. J., van Grondelle, R., Thomas, J-C., Dekker, J. P. & Robert, B. H., 2013, In : Journal of Physical Chemistry B. 117, 38, p. 11176-11183 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Excited States of the Inactive and Active Forms of the Orange Carotenoid Protein

Berera, R., Gwizdala, M. S., van Stokkum, I. H. M., Kirilovsky, D. & van Grondelle, R., 2013, In : Journal of Physical Chemistry B. 117, p. 9121-9128

Research output: Contribution to JournalArticleAcademicpeer-review

Light Harvesting and Blue-Green Light Induced Non-Photochemical Quenching in Two Different C-Phycocyanin Mutants of Synechocystis PCC 6803

Tian, L., van Stokkum, I. H. M., Koehorst, R. B. M. & van Amerongen, H., 2013, In : Journal of Physical Chemistry B. 117, p. 11000-11006

Research output: Contribution to JournalArticleAcademicpeer-review

Photoionization and Electron Radical Recombination Dynamics in Photoactive Yellow Protein Investigated by Ultrafast Spectroscopy in the Visible and Near-Infrared Spectral Region

Zhu, J., Hospes, M., Arents, J., Kennis, J. T. M., van Stokkum, I. H. M., Hellingwerf, K. J. & Groot, M. L., 2013, In : Journal of Physical Chemistry B. 117, 38, p. 11042-11048

Research output: Contribution to JournalArticleAcademicpeer-review

Ultrafast Energy Transfer and Excited State Coupling in an Artificial Photosynthetic Antenna

Maiuri, M., Snellenburg, J. J., van Stokkum, I. H. M., Pillai, S., Carter, K. W., Gust, D., Moore, T. A., Moore, A. L. & van Grondelle, R., 2013, In : Journal of Physical Chemistry B. 117, 46, p. 14183-14190

Research output: Contribution to JournalArticleAcademicpeer-review

Ultrafast energy transfer and excitonic coupling in an artificial photosynthetic antenna

Maiuri, M., Snellenburg, J. J., van Stokkum, I. H. M., Pillai, S., Gust, D., Moore, T. A., Moore, A. L., van Grondelle, R., Cerullo, G. & Polli, D., 1 Dec 2013, The European Conference on Lasers and Electro-Optics, CLEO_Europe 2013. (Optics InfoBase Conference Papers).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ultrafast energy transfer in an artificial photosynthetic antenna

Maiuri, M., Snellenburg, J. J., Van Stokkum, I. H. M., Pillai, S., Gust, D., Moore, T. A., Moore, A. L., Van Grondelle, R., Cerullo, G. & Polli, D., 5 Apr 2013, 18th International Conference on Ultrafast Phenomena, UP 2012. 08010. (EPJ Web of Conferences; vol. 41).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Open Access

Ultrafast geminate electron-radical recombination dynamics in photoactive yellow protein

Zhu, J., Paparelli, L., Arents, J., Hellingwerf, K. J., Kennis, J. T. M., van Stokkum, I. H. M. & Groot, M. L., 2013, XVIIIth International Conference on Ultrafast Phenomena. EDP Sciences, p. 07010

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ultrafast Proton Shuttling in Psammocora Cyan Fluorescent Protein

Kennis, J. T. M., van Stokkum, I. H. M., Peterson, D. S., Pandit, A. & Wachter, R. M., 2013, In : Journal of Physical Chemistry B. 117, p. 11134-11143

Research output: Contribution to JournalArticleAcademicpeer-review

2014

Exploring the mechanism(s) of energy dissipation in the light harvesting complex of the photosynthetic algae Cyclotella meneghiniana

Ramanan, C., Berera, R., Gundermann, K., van Stokkum, I. H. M., Buchel, C. & van Grondelle, R., 2014, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2014, 9, p. 1507-1513

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Quantitative Fluorescence Spectral Analysis of Protein Denaturation

van Stokkum, I. H. M. & Laptenok, S., 2014, In : Methods in Molecular Biology. 2014, p. 43-51

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
2015

A Hidden State in Light-Harvesting Complex II Revealed By Multipulse Spectroscopy

van Oort, B. F., van Grondelle, R. & van Stokkum, I. H. M., 2015, In : Journal of Physical Chemistry B. 119, 16, p. 5184-5193

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Functional rearrangement of the light-harvesting antenna upon state transitions in a green alga

Wlodarczyk, L. M., Snellenburg, J. J., Ihalainen, J. A., van Grondelle, R., van Stokkum, I. H. M. & Dekker, J. P., 2015, In : Biophysical Journal. 108, 2, p. 261-271 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

PSI-LHCI of Chlamydomonas reinhardtii: Increasing the absorption cross section without losing efficiency

Le Quiniou, C. L., Tian, L., Drop, B. A., Wientjes, I. E., van Stokkum, I. H. M., van Oort, B. F. & Croce, R., 2015, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1847, 4-5, p. 458-467

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Short Hydrogen Bonds and Negative Charge in Photoactive Yellow Protein Promote Fast Isomerization but not High Quantum Yield

Zhu, J., Vreede, J., Hospes, M., Arents, J., Kennis, J. T. M., van Stokkum, I. H. M., Hellingwerf, K. J. & Groot, M. L., 2015, In : Journal of Physical Chemistry B. 119, 6, p. 2372-2383

Research output: Contribution to JournalArticleAcademicpeer-review

2016

A method to decompose spectral changes in Synechocystis PCC 6803 during light-induced state transitions

Acuña, A. M., Kana, R., Gwizdala, M. S., Snellenburg, J. J., van Alphen, P., van Oort, B. F., Kirilovsky, D., van Grondelle, R. & van Stokkum, I. H. M., 2016, In : Photosynthesis Research. 130, 1-3, p. 237-249

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access