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• 2012

  Progress in understanding 2-hydroxyglutaric acidurias

  Kranendijk, M., Struijs, E. A., Salomons, G. S., van der Knaap, M. S. & Jakobs, C. A. J. M., 2012, In: Journal of Inherited Metabolic Disease. 35, 4, p. 571-587

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • 2-Hydroxyglutaricaciduria
  • alpha-hydroxyglutarate
• 2011

  Thermal plasticity in metabolic rates linked to life-history traits and foraging behaviour in a parasitic wasp.

  Le Lann, C., Wardziak, T., van Baaren, J. & van Alphen, J. J. M., 2011, In: Functional Ecology. 25, p. 641-651

  Research output: Contribution to Journal › Article › Academic › peer-review
• 2012

  Glotaran: A Java-Based Graphical User Interface for the R Package TIMP

  Snellenburg, J. J., Laptenok, S., Seger, R., Mullen, K. M. & van Stokkum, I. H. M., 2012, In: Journal of Statistical Software. 49, 3, p. 1-22

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Graphical User Interface
  • Java
  • Graphical user interfaces
  • User Interface
  • User interfaces
  196 Downloads (Pure)
• 2013

  Formal specification and analysis of intelligent agents for model-based medicine usage management

  Hoogendoorn, M., Klein, M. C. A., Memon, Z. A. & Treur, J., 2013, In: Computers in Biology and Medicine. 43, 5, p. 444-457

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Formal specification
  • Intelligent agents
  • Medicine
  • Patient Simulation
  • Systems Analysis
• 2015

  An agent-based model for integrated emotion regulation and contagion in socially affected decision making

  Manzoor, A. & Treur, J., 2015, In: Biologically Inspired Cognitive Architectures. 12, p. 105-120

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Decision Making
  • Emotions
  • Decision making
  • Experiments
  185 Downloads (Pure)
• 2011

  An Agent Model Integrating an Adaptive Model for Environmental Dynamics

  Treur, J. & Umair, M., 2011, In: International Journal of Intelligent Information and Database Systems. 5, p. 201-228 28 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Differential equations
  • Dynamical systems
  • Set theory
• 2016

  Verification of Temporal-Causal Network Models by Mathematical Analysis

  Treur, J., 2016, In: Vietnam Journal of Computer Science. 3, p. 207-221 15 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Experiments
• 2015

  Comparative Evaluation of Different Computational Models for Performance of Air Source Heat Pumps Based on Real World Data

  Tabatabaei, S. A., Treur, J. & Waumans, E., 2015, In: Energy Procedia. 95, p. 459-466 8 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Air source heat pumps
  • Pumps
  • Hot Temperature
  • Decision making
  • Heating
• 2010

  Computational Modeling and Analysis of the Role of Physical Activity in Mood Regulation and Depression

  Both, F., Hoogendoorn, M., Klein, M. C. A. & Treur, J., 2010, Neural Information Processing: Theory and Algorithms, Proceedings of the 17th International Conference on Neural Information Processing. Wong, K. K. W., Mendis, B. S. U. & Bouzerdoum, A. (eds.). Springer Verlag, p. 270-281

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
• 2011

  Modelling Trust Dynamics from a Neurological Perspective

  Hoogendoorn, M., Jaffry, S. W. & Treur, J., 2011, Advances in Cognitive Neurodynamics II. Wang, R. & Gu, F. (eds.). Springer Verlag, p. 523-536

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
• 2010

  On the Reciprocal Interaction Between Believing and Feeling: an Adaptive Agent Modelling Perspective

  Memon, Z. A. & Treur, J., 2010, In: Cognitive Neurodynamics Journal. 4, p. 377-394 18 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Emotions
  • Communication
  • Learning
  • Observation
  228 Downloads (Pure)
• 2012

  Analysis and Support of Lifestyle via Emotions Using Social Media

  van Breda, W., Treur, J. & van Wissen, A., Dec 2012, In: Lecture Notes in Computer Science. 7710, p. 275-291

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Social Media
  • Emotion
  • Social Interaction
  • Intelligent systems
  • Intelligent Systems
• 2010

  The living cell as a multiagent organisation: a compositional organisation model of intracellular dynamic.

  Jonker, C. M., Snoep, J. L., Treur, J., Westerhoff, H. V. & Wijngaards, W. C. A., 2010, Transactions on computational collective intelligence.. Nguyen, N. T. & Kowalczyk, R. (eds.). Germany: Springer-Verlag Berlin-Heidelberg, p. 160-206

  Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic › peer-review
• 2013

  A Formal Approach to Building Compositional Agent-Based Simulations

  Jonker, C. M. & Treur, J., 2013, Simulating Social Complexity. Edmonds, B. & Meyer, R. (eds.). Springer Verlag, p. 57-94 (Understanding Complex Systems).

  Research output: Chapter in Book / Report / Conference proceeding › Chapter › Academic › peer-review

• Modelling Prior and Retrospective Awareness of Actions

  Thilakarathne, D. J. & Treur, J., 2013, In: Lecture Notes in Computer Science. 7930, p. 62-73

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Awareness
  • Modeling
  • Scenarios
  • Simulation Experiment
  • Experiments

• A Computational Cognitive Model for Intentional Inhibition of Actions

  Thilakarathne, D. J. & Treur, J., 2013, Proceedings of the 9th International Conference on Cognitive Science, ICCS'13. Procedia - Social and Behavioral Sciences. Teh, C. S., Chae, H. R., Adruce, S. A. Z., Anding, P. N., Chen, C. J., Aziz, N. A. & Tan, K. W. (eds.). Kuching, Malaysia: Elsevier, p. 63-72 (97).

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
• 2010

  Incorporating Interdependency of Trust Values in Existing Models for Trust Dynamics

  Hoogendoorn, M., Jaffry, S. W. & Treur, J., 2010, Trust Management IV, Proceedings of the Fourth International Conference on Trust Management. Advances in Information and Communication Technology, vol. 321.. Nishigaki, M., Josang, A., Murayama, Y. & Marsh, S. (eds.). Springer Verlag, p. 263-276

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
• 2016

  Doubting What to Eat: A Computational Model for Food Choice Using Different Valuing Perspectives

  Abro, A. H. & Treur, J., 2016, Neural Information Processing: 23rd International Conference, ICONIP 2016, Kyoto, Japan, October 16–21, 2016, Proceedings. Hirose, A., Ozawa, S., Doya, K., Lee, M. & Liu, D. (eds.). Kyoto, Japan: Springer, Vol. 9950 LNCS. p. 164-174 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9950 LNCS).

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review

  Open Access

  • Computational Model
  • Decision Making
  • Decision making
• 2011

  Modelling Trust for Communicating Agents: Agent-Based and Population-Based Perspectives

  Jaffry, S. W. & Treur, J., 2011, Proceedings of the Third International Conference on Computational Collective Intelligence. Jedrzejowicz, P., Nguyen, N.T. & Hoang, K. (eds.). Springer Verlag, p. 366-377

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
• 2010

  Modelling Caregiving Interactions During Stress

  Aziz, A. A., Treur, J. & van der Wal, C. N., 2010, Proceedings of the Second International Conference on Brain Informatics, BI'10. Lecture Notes in Artificial Intelligence, vol. 6334.. Yao, Y., Sun, R., Poggio, T., Liu, J., Zhong, N. & Huang, J. (eds.). Heidelberg: Springer Verlag, p. 263-273

  Research output: Chapter in Book / Report / Conference proceeding › Conference contribution › Academic › peer-review
• 2015

  Preliminary findings on associations between moral emotions and social behavior in young children with normal hearing and with cochlear implants

  Ketelaar, L., Wiefferink, C. H., Frijns, J. H. M., Broekhof, E. & Rieffe, C., 21 Feb 2015, In: European Child and Adolescent Psychiatry. 24, 11, p. 1369-1380 12 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Social Behavior
  • Cochlear Implants
  • Hearing
  • Emotions
  • Child
• 2013

  The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

  Castoe, T. A., De Koning, A. P. J., Hall, K. T., Card, D. C., Schield, D. R., Fujita, M. K., Ruggiero, R. P., Degner, J. F., Daza, J. M., Gu, W., Reyes-Velasco, J., Shaney, K. J., Castoe, J. M., Fox, S. E., Poole, A. W., Polanco, D., Dobry, J., Vandewege, M. W., Li, Q., Schott, R. K. & 19 others, Kapusta, A., Minx, P., Feschotte, C., Uetz, P., Ray, D. A., Hoffmann, F. G., Bogden, R., Smith, E. N., Chang, B. S. W., Vonk, F. J., Casewell, N. R., Henkel, C. V., Richardson, M. K., Mackessy, S. P., Bronikowsi, A. M., Yandell, M., Warren, W. C., Secor, S. M. & Pollock, D. D., 17 Dec 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 51, p. 20645-20650

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Python bivittatus
  • snakes
  • genome
  • Python
  • Ophiophagus hannah
• 2015

  Professional personae: How organizational identification shapes online identity in the workplace

  Fieseler, C., Meckel, M. & Ranzini, G., 2015, In: Journal of Computer-Mediated Communication. 20, 2, p. 153-170

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Marketing
  • Managers
  • Communication
• 2014

  π Aromaticity and Three-Dimensional Aromaticity: Two sides of the Same Coin?

  Poater, J., Sola, M., Vinas, C. & Teixidor, F., 2014, In: Angewandte Chemie International Edition in English. 53, p. 12191-12195

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Polycyclic aromatic hydrocarbons
  • Borohydrides
  • Polycyclic Aromatic Hydrocarbons
  • Electrons
• 2016

  Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA

  Kettunen, J., Demirkan, A., Würtz, P., Draisma, H. H. M., Haller, T., Rawal, R., Vaarhorst, A. A. M., Kangas, A. J., Lyytikäinen, L. P., Pirinen, M., Pool, R., Sarin, A-P., Soininen, P., Tukiainen, T., Wang, Q., Tiainen, M., Tynkkynen, T., Amin, N., Zeller, T., Beekman, M. & 30 others, Deelen, J., Willems van Dijk, K., Esko, T., Hottenga, J. J., van Leeuwen, E. M., Lehtimäki, T., Mihailov, E., Rose, R. J., de Craen, A. J., Gieger, C., Kähönen, M., Perola, M., Blankenberg, S., Savolainen, M. J., Verhoeven, A., Viikari, J., Willemsen, G., Boomsma, D. I., van Duijn, C. M., Eriksson, J., Jula, A., Järvelin, M. R., Kaprio, J., Metspalu, A., Raitakari, O., Salomaa, V., Slagboom, P. E., Waldenberger, M., Ripatti, S. & Ala-Korpela, M., 2016, In: Nature Communications. 7, 11122.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • lipoproteins
  • Metabolites
  • metabolites
  • genome
  • Metabolism

• The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

  van Zundert, G. C. P., Rodrigues, J. P. G. L. M., Trellet, M., Schmitz, C., Kastritis, P. L., Karaca, E., Melquiond, A. S. J., van Dijk, M., de Vries, S. J. & Bonvin, A. M. J. J., 22 Feb 2016, In: Journal of Molecular Biology. 428, 4, p. 720-5 6 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Drug Design
• 2010

  Gradient estimation for discrete-event systems by measure-valued differentiation

  Heidergott, B. F., Vazquez-Abad, F., Pflug, G. & Farenhorst - Yuan, T., 2010, In: ACM Transactions on Modeling and Computer Simulation. 20, 1, p. 5.1-5.28 28 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Gradient Estimation
  • Discrete Event Systems
  • Discrete event simulation
  • Derivatives
  • Phantoms
• 2017

  Soil microbiome is more heterogeneous in organic than in conventional farming system

  Lupatini, M., Korthals, G. W., de Hollander, M., Janssens, T. K. S. & Kuramae, E. E., 4 Jan 2017, In: Frontiers in Microbiology. 7, JAN, 2064.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Agriculture
  • Soil
  • Microbiota
  • Organic Agriculture
  • Ecosystem
• 2013

  Multiple imputation of missing values was not necessary before performing a longitudinal mixed-model analysis

  Twisk, J. W. R., de Boer, M. R., de Vente, W. & Heijmans, M. W., 2013, In: Journal of Clinical Epidemiology. 66, 9, p. 1022-1028

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Datasets
  • Data Analysis
  • Longitudinal Studies
• 2014

  Floods and climate: emerging perspectives for flood risk assessment and management

  Merz, B., Aerts, J. C. J. H., Arnbjerg-Nielsen, K., Baldi, M., Becker, A., Bichet, A., Blöschl, G., Bouwer, L. M., Brauer, A., Cioffi, F., Delgado, J. M., Gocht, M., Guzetti, F., Harrigan, S., Hirschboeck, K., Kilsby, C., Kron, W., Kwon, H. -H., Lall, U., Merz, R. & 9 others, Nissen, K., Salvatti, P., Swierczynski, T., Ulbrich, U., Viglione, A., Ward, P. J., Weiler, M., Wilhelm, B. & Nied, M., 2014, In: Natural Hazards and Earth System Sciences. 14, p. 1921-1942

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • risk management
  • risk assessment
  • climate
  • catchment
  • flood risk management
• 2010

  Measuring enzyme activities under standardized in vivo-like conditions for Systems Biology

  van Eunen, K., Bouwman, J., Daran-Lapujade, P. A. L., Postmus, J., Canelas, A., Mensonides, F. I. C., Orij, R., Tuzun, I., van der Brink, J., Smits, G. J., van Gulik, W. M., Brul, S., Heijnen, J. J., de Winde, J. H., Teixeira de Mattos, M. J., Kettner, C., Nielsen, J., Westerhoff, H. V. & Bakker, B. M., 2010, In: The FEBS Journal. 277, p. 749-760

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Enzyme activity
  • Systems Biology
  • Yeast
  • Kinetic parameters
  • Assays
• 2016

  Why nonprofits are easier to endorse on social media: the roles of warmth and brand symbolism

  Bernritter, S. F., Verlegh, P. W. J. & Smit, E. G., 2016, In: Journal of Interactive Marketing. 33, February, p. 27-42

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Social Media
  • Consumer Intention
  • Consumer Behaviour
  • Facebook
  • Endorsements
• 2013

  Global fisheries governance beyond the state: unraveling the effectiveness of the Marine Stewardship Council.

  Kalfagianni, A. & Pattberg, P. H., 2013, In: Journal of Environmental Studies and Sciences. 3, 2, p. 184-193

  Research output: Contribution to Journal › Article › Academic › peer-review

  • fishery
  • sustainable fisheries
  • fish stock
  • organization
  • governance
• 2017

  Targeting energy metabolism in Mycobacterium tuberculosis – a new paradigm in anti-mycobacterial drug discovery.

  Bald, D., Villellas, C., Lu, P. & Koul, A., 2017, In: mBio. 8, 2, p. 1-11 11 p., e00272-17.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Oxidative Phosphorylation
  • Drug Discovery
  • Mycobacterium tuberculosis
  • Energy Metabolism
  • 6-chloro-2-ethyl-N-(4-(4-(4-(trifluoromethoxy)phenyl)piperidin-1-yl)benzyl) imidazo(1,2-a)pyridine-3-carboxamide
• 2011

  XUV frequency comb metrology on the ground state of helium

  Kandula, D. Z., Gohle, C., Pinkert, T. J., Ubachs, W. M. G. & Eikema, K. S. E., 2011, In: Physical Review A. Atomic, Molecular and Optical Physics. 84, 6, 062512.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • metrology
  • helium
  • ground state
  • helium atoms
  • pulses
  157 Downloads (Pure)

• Searches for rare or forbidden semileptonic charm decays

  Lees, J. P., Raven, H. G., Snoek, H. & BaBar, C., 2011, In: Physical Review D. 84, 7, p. 072006 072006.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • decay
  • kaons
  • confidence
  • muons
  • pions
  205 Downloads (Pure)
• 2013

  Cross Culture Work: Practices of Collaboration in the Panama Canal Expansion Program

  Smits, K. C. M., 2013, Delft: Next Generation Infrastructures Foundation. 343 p.

  Research output: PhD Thesis › PhD Thesis - Research VU Amsterdam, graduation VU Amsterdam

  Open Access

  File
  1898 Downloads (Pure)

• Osteoinductive bone substitutes

  Liu, T., 2013

  Research output: PhD Thesis › PhD Thesis - Research VU Amsterdam, graduation VU Amsterdam

  Open Access

  File
  128 Downloads (Pure)
• 2016

  Stone by Stone: Team Construction and Production Procedures of Sixth-Century Mosaics in Palestine and Transjordan

  Zohar, D., 2016, 240 p.

  Research output: PhD Thesis › PhD Thesis - Research external, graduation VU Amsterdam

  Open Access

  File

  • Palestine
  729 Downloads (Pure)
• 2013

  Noordmans, de filosofie en christelijk leiderschap

  Boele, K., 2013, Zoetermeer: Boekencentrum Academic. 179 p.

  Research output: PhD Thesis › PhD Thesis - Research external, graduation VU Amsterdam

  Open Access

  File
  525 Downloads (Pure)
• 2017

  The effects of cognitive behavioral therapy are not systematically falling: a revision of Johnsen & Friborg.

  Cristea, I. A., Hollon, S. D., David, D., Karyotaki, E., Cuijpers, P. & Stefan, S. I., 2017, In: Psychological Bulletin. 143, 3, p. 326-340 15 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Cognitive Behavioral Therapy
  • Publications
  • Depression
  • Meta-Analysis
  • Accidental Falls
  603 Downloads (Pure)
• 2012

  $\sqrt{n}$-consistent parameter estimation for systems of ordinary differential equations: bypassing numerical integration via smoothing

  Gugushvili, S. & Klaassen, C. A. J., 2012, In: Bernoulli: A Journal of Mathematical Statistics and Probability. 18, 3, p. 1061-1098 38 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Consistent Estimation
  • System of Ordinary Differential Equations
  • Numerical integration
  • Smoothing
  • Parameter Estimation
  88 Downloads (Pure)
• 2013

  Low back pain and postural sway during quiet standing with and without sensory manipulation: A systematic review

  Mazaheri, M., Coenen, P., Parnianpour, M., Kiers, H. & van Dieen, J. H., 2013, In: Gait and Posture. 37, 1, p. 12-22

  Research output: Contribution to Journal › Article › Academic › peer-review

  File

  • Low Back Pain
  • Systematic Reviews
  • PubMed
  475 Downloads (Pure)
• 2017

  Applied bioinformatics: Genomics of human and murine retinoblastoma

  Kooi, E. I., 2017, Ipskamp Drukkers B.V.. 167 p.

  Research output: PhD Thesis › PhD Thesis - Research VU Amsterdam, graduation VU Amsterdam

  Open Access

  File
  1315 Downloads (Pure)
• 2011

  Jesus the Healer: A Theological Reflection on the Role of Christology in the Growth of the Mountain of Fire and Miracles Church in Nigeria

  Aigbadumah, C. A., 2011

  Research output: PhD Thesis › PhD Thesis - Research external, graduation VU Amsterdam

  Open Access

  File
  18511 Downloads (Pure)
• 2017

  Human dignity in a comparative perspective: embryo protection regimes in Italy and Germany

  Parfenchyk, V. & Flos, A. G. F. M., 6 Mar 2017, In: Law, Innovation and Technology. 9, 1, p. 45-77 33 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Personhood
  • Stem cells
  • human dignity
  • embryo
  • Italy
  638 Downloads (Pure)
• 2011

  Participatory ergonomics to prevent low back pain and neck pain at the workplace

  Driessen, M. T., 2011

  Research output: PhD Thesis › PhD Thesis - Research VU Amsterdam, graduation VU Amsterdam

  Open Access

  File
  454 Downloads (Pure)
• 2015

  Energy efficient networking solutions in cloud-based environments: a systematic literature review

  Alizadeh Moghaddam, F., Lago, P. & Grosso, P., 2015, In: ACM Computing Surveys. 47, 4, p. 64-96 32 p.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Energy Efficient
  • Literature Review
  • Networking
  • Energy Efficiency
  • Data Center
  152 Downloads (Pure)
• 2012

  On the work-up of (Refractory) Coeliac Disease

  Tack, G. J., 2012

  Research output: PhD Thesis › PhD Thesis - Research VU Amsterdam, graduation VU Amsterdam

  Open Access

  File
  147 Downloads (Pure)
• 2013

  Leadership roles in the Transnationalisation of Nigerian Pentecostal Churches: The Mountain of Fire and Miracles Church in the Netherlands and Ghana

  Ajani, E. O., 2013, Amsterdam: VU Uitgeverij. 243 p.

  Research output: PhD Thesis › PhD Thesis - Research external, graduation VU Amsterdam

  Open Access

  File
  2895 Downloads (Pure)