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2019

A new phase in DEB research

Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 1-7 7 p.

Research output: Contribution to JournalEditorialAcademicpeer-review

energy budget
energy
state of the art

Body size as emergent property of metabolism

Lika, K., Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 8-17 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

body size
metabolism
assimilation (physiology)
body mass
breathing

Comparative physiological energetics of Mediterranean and North Atlantic loggerhead turtles

Marn, N., Jusup, M., Catteau, S., Kooijman, S. A. L. M. & Klanjšček, T., Jan 2019, In : Journal of sea research. 143, p. 100-118 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Caretta caretta
energy budget
turtle
energetics
sexual maturity

Fitting multiple models to multiple data sets

Marques, G. M., Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 48-56 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
energy
prediction
methodology
parameter

Life in the slow lane? A dynamic energy budget model for the western swamp turtle, Pseudemydura umbrina

Arnall, S. G., Mitchell, N. J., Kuchling, G., Durell, B., Kooijman, S. A. L. M. & Kearney, M. R., Jan 2019, In : Journal of sea research. 143, p. 89-99 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
turtle
swamp
energy
estivation

Why big-bodied animal species cannot evolve a waste-to-hurry strategy

Augustine, S., Lika, K. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 18-26 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
energy
assimilation (physiology)
animals
animal
2018

Altricial-precocial spectra in animal kingdom

Augustine, S., Lika, K. & Kooijman, S. A. L. M., 21 Apr 2018, In : Journal of sea research. p. 1-8 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

puberty
mammal
animal
mammals
bird

Biomass conversion at population level

Kooijman, S. A. L. M., 2018, Individual-Based Models and Approaches in Ecology: Populations, Communities and Ecosystems. CRC Press, p. 338-358 21 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Biomass
Predator
Prey
Harvesting
Energy

The AmP project: Comparing species on the basis of dynamic energy budget parameters

Marques, G. M., Augustine, S., Lika, K., Pecquerie, L., Domingos, T. & Kooijman, S. A. L. M., 9 May 2018, In : PLoS Computational Biology. 14, 5, e1006100.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Pets
Budgets
energy budget
pets
Animals
2017

Comment on the ecophysiology of the Greenland shark, Somniosus microcephalus

Kooijman, S. A. L. M., 2017, In : Polar Biology. 40, p. 2429-2533

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File
Crassostrea gigas
oysters
stable isotopes
stable isotope
food

Environmental effects on growth, reproduction, and life-history traits of loggerhead turtles

Marn, N., Jusup, M., Legović, T., Kooijman, S. A. L. M. & Klanjšček, T., 24 Sep 2017, In : Ecological Modelling. 360, p. 163-178 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

life history trait
turtle
environmental effect
food availability
environmental factor

Homeostasis and the fuelling of metabolism; Comment on "Physics of metabolic organization" by Marko Jusup et al

Kooijman, S. A. L. M., 2017, In : Physics of Life Reviews. 20, p. 60-62

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File

Models in stress research

Kooijman, S. A. L. M., 2017, In : Ecological Complexity.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stofzaad, een bijzondere soort

Kooijman, S. A. L. M., 2017, In : Holland's Duinen. 69, p. 32-34

Research output: Contribution to JournalArticlePopular

Open Access
File

The role of bivalves in the Balgzand: First steps on an integrated modelling approach

Kooijman, S. A. L. M., 2017, In : Ecological Modelling. 359

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
2016

Application of Dynamic Energy Budget theory for conservation relevant modelling of Bird life histories

Teixeira, C. M. G. L., 2016

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File
energy budget
life history
bird
modeling

Life cycle and ecology of the loggerhead turtle (Caretta caretta, Linnaeus, 1758): development and application of the Dynamic Energy Budget model

Marn, N., 2016

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File
2015

A dynamic energy budget for the whole life-cycle of holometabolous insects.

Llandres, A. L., Marques, G. M., Maino, J. L., Kooijman, S. A. L. M., Kearney, M. R. & Casas, J., 2015, In : Ecological Monographs.

Research output: Contribution to JournalArticleAcademicpeer-review

Effects of chronic exposure to environmentally relevant concentrations of waterborne uranium an the digestive tract of zebrafish, Danio rerio.

Augustine, S., Pereira, S., Floriani, M., Camilleri, V., Kooijman, S. A. L. M., Gagnaire, B. & Adam-Guillermin, A., 2015, In : Journal of Environmental Radioactivity. 142, p. 45-53

Research output: Contribution to JournalArticleAcademicpeer-review

Uranium
Zebrafish
Gastrointestinal Tract
uranium
Transmission Electron Microscopy

Sensitivity of animals to chemical compounds links to metabolic rate.

Baas, J. & Kooijman, S. A. L. M., 2015, In : Ecotoxicology. 24, p. 657-663

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical compounds
chemical compound
Animals
Maintenance
Pesticides

The Importance of Body Size: Scaling of Physiological Traits in Insects

Maino, J. L., 2015

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File
Open Access
File
endocrine disruptor
snail
pond
modeling
effect
2014

35 years of DEB research

van der Meer, J., Klok, C., Kearney, M. R., Wijsman, J. W. M. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, November 2014, p. 1-4

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
energy
development theory
ecotoxicology
ecological value

A new perspective on the growth pattern of the wandering albatross (Diomedea exulans) through deb theory.

Teixeira, C. M. G. L., Sousa, T., Marques, G. M., Domingos, T. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 117-127

Research output: Contribution to JournalArticleAcademicpeer-review

fledging
energy budget
energy
chicks
food availability

Bivalves: From individual to population modelling

Saraiva, S., van der Meer, J. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 71-83

Research output: Contribution to JournalArticleAcademicpeer-review

population modeling
bivalve
Bivalvia
mortality
egg

Comparative energetics of the 5 fish classes on the basis of dynamic energy budgets.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Journal of sea research. 94, p. 19-28

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
energetics
Actinopterygii
energy
fish

Dynamic Energy Budget parameters of Brachidontes pharaonis, a lessepsian bivalve in the Mediterranean Sea.

Montalto, V., Palmeri, V., Rinaldi, A., Kooijman, S. A. L. M. & Sara, G., 2014, In : Journal of sea research. 94, p. 47-51

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
bivalve
Bivalvia
energy
energy flow

Environmental variability and energetic adaptability of the great scallop, Pecten maximus, facing climate change ATT. dubbelpromotie

Lavaud, R., 2014

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File

Feeding and energetics of the great scallop, Pecten maximus, through a DEB model.

Lavaud, R., Flye-Sainte-Marie, J., Jean, F., Emmery, A., Strand, O. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 5-18

Research output: Contribution to JournalArticleAcademicpeer-review

Pecten maximus
scallops
energy budget
energetics
shell (molluscs)

Inference on energetics of deep-sea fish that cannot be aged: The case of the hagfish

van der Meer, J. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 138-143

Research output: Contribution to JournalArticleAcademicpeer-review

Mechanisms behind the metabolic flexibility of an invasive comb jelly.

Augustine, S., Jaspers, C., Kooijman, S. A. L. M., Carlotti, F., Poggiale, J. C., Freitas, V., v.d. Veer, H. & Walraven, L., 2014, In : Journal of sea research. 94, p. 156-165

Research output: Contribution to JournalArticleAcademicpeer-review

Mnemiopsis leidyi
Ctenophora
energy budget
algal bloom
turnover

Mechanistic models to explore combined effects of toxic chemicals and natural stressing factors: case study on springtails

Hamda, N. T., 2014

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File

Metabolic acceleration in animal ontogeny: an evolutionary perspective.

Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 128-137

Research output: Contribution to JournalArticleAcademicpeer-review

ontogeny
embryo
embryo (animal)
breathing
trajectories

Metabolic acceleration in mediterranean perciformes.

Lika, K., Kooijman, S. A. L. M. & Papandroulakis, N., 2014, In : Journal of sea research. 94, p. 37-46

Research output: Contribution to JournalArticleAcademicpeer-review

Perciformes
larval development
spawning
fish development
larva

Metabolic acceleration in the pond snail Lymnaea stagnalis?

Zimmer, E. I., Ducrot, V., Jager, T., Koene, J. M., Lagadic, L. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 84-91

Research output: Contribution to JournalArticleAcademicpeer-review

Lymnaea stagnalis
snail
snails
pond
energy budget

Modelling Bivalves in estuaries and coastal areas

de Carvalho Saraiva, A. S., 2014, 195 p.

Research output: PhD ThesisPhD Thesis - Research external, graduation VUAcademic

Open Access
File

Modelling the eco-physiology of the purple mauve stinger, Pelagia noctiluca using Dynamic Energy Budget theory.

Augustine, S., Rosa, S., Kooijman, S. A. L. M., Carlotti, F. & Poggiale, J. C., 2014, In : Journal of sea research. 94, p. 52-64

Research output: Contribution to JournalArticleAcademicpeer-review

ecophysiology
energy budget
energy
starvation
modeling

Reconciling theories for metabolic scaling.

Maino, J., Kearney, M., Nisbet, R. M. & Kooijman, S. A. L. M., 2014, In : Journal of Animal Ecology. 83, p. 20-29

Research output: Contribution to JournalArticleAcademicpeer-review

energy budget
energy
breathing
respiration
metabolism

Resource allocation to reproduction in animals.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Biological Reviews. 89, p. 849-859

Research output: Contribution to JournalArticleAcademicpeer-review

Resource Allocation
animal reproduction
resource allocation
Resource allocation
Reproduction

The bijection from data to parameter space with the standard deb model quantifies the supply-demand spectrum.

Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., 2014, In : Journal of Theoretical Biology. 354, p. 35-47

Research output: Contribution to JournalArticleAcademicpeer-review

Puberty
Bijection
Reproduction
Parameter Space
Standard Model
2013

Erratum to: Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 67, p. 1019-1021

Research output: Contribution to JournalErratumAcademic

Open Access
File

Linking Individual-based Models and Dynamic Energy Budget Theory: Lessons for Ecology and Ecotoxicology

Martin, B., 2013, 103 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

The pond snail under stress. Interactive effects of food limitation, toxicants and copulation explained by Dynamic Energy Budget theory.

Zimmer, E. I., 2013, 153 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Waste to hurry: Dynamic energy budgets explain the need of wasting to fully exploit blooming resources.

Kooijman, S. A. L. M., 2013, In : Oikos. 122, p. 348-357

Research output: Contribution to JournalArticleAcademicpeer-review

Chordata
energy budget
comparative study
energetics
energy

Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 66, p. 795-805

Research output: Contribution to JournalArticleAcademicpeer-review

Eggs
Parturition
adult development
Berlin
Embryo
2012

Balancing nutrients, water and heat in the face of environmental change: a thermodynamic niche framework.

Kearney, M., Simpson, S., Raubenheimer, D. & Kooijman, S. A. L. M., 2012, In : Functional Ecology.

Research output: Contribution to JournalArticleAcademicpeer-review

thermodynamics
niche
environmental change
niches
heat

Energy budgets.

Kooijman, S. A. L. M., 2012, Sourcebook in Theoretical Ecology. Hastings, A., Gross, L. & eds. (eds.). California: University of California Press

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review