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2019

Both electronic and vibrational coherences are involved in primary electron transfer in bacterial reaction center

Ma, F., Romero, E., Jones, M. R., Novoderezhkin, V. I. & van Grondelle, R., 25 Feb 2019, In : Nature Communications. 10, p. 1-9 9 p., 933.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
electron transfer
Electrons
electronics
Rhodobacter sphaeroides
Proteobacteria

Electron-vibrational coupling decreases trapping by low-energy states in photosynthesis

Malý, P., Novoderezhkin, V. I., van Grondelle, R. & Mančal, T., 1 Jun 2019, In : Chemical Physics. 522, p. 69-76 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

photosynthesis
Photosynthesis
Excitation energy
Electron energy levels
trapping

Photosynthesis in intact Chlamydomonas reinhardtii studied by time-resolved fluorescence spectroscopy

Wlodarczyk, L. M., 2019, 192 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Strong plasmonic fluorescence enhancement of individual plant light-harvesting complexes

Kyeyune, F., Botha, J. L., Van Heerden, B., Malý, P., Van Grondelle, R., Diale, M. & Krüger, T. P. J., 28 Aug 2019, In : Nanoscale. 11, 32, p. 15139-15146 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fluorescence
Luminance
Pigments
Surface plasmon resonance
Hybrid systems

The role of far-red spectral states in the energy regulation of phycobilisomes

Krüger, T. P. J., van Grondelle, R. & Gwizdala, M., 1 Apr 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 4, p. 341-349 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phycobilisomes
Carotenoids
Pigments
Phycobilins
Quenching
2018

A functional compartmental model of the Synechocystis PCC 6803 phycobilisome

van Stokkum, I. H. M., Gwizdala, M., Tian, L., Snellenburg, J. J., van Grondelle, R., van Amerongen, H. & Berera, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 87-102 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Apoprotein heterogeneity increases spectral disorder and a step-wise modification of the B850 fluorescence peak position

Ilioaia, C., Krüger, T. P. J., Ilioaia, O., Robert, B., van Grondelle, R. & Gall, A., Feb 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 2, p. 137-144 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Apoproteins
Fluorescence
Photons
Light
Rhodopseudomonas

Between order and disorder: The supramolecular organization of photosynthetic membrane

Sznee, K. E., 2018, 145 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Bionanophotonics: general discussion

Chandra, A., Chattopadhyay, A., Cogdell, R., Datta, A., De, A., Dhamija, S., Golla, M., Haacke, S., Hariharan, M., Helliwell, J., Improta, R., Jayasree, R. S., Jones, M., Joseph, J., Karsili, T., Kohler, B., Krishnan, R., Mandal, I., Markovitsi, D., Medhi, H. & 12 othersMishra, P. P., Chowdhury, P. R., Sarangi, M., Schlichting, I., Seddon, J., Sharma, A., Siriki, A., Swaminathan, R., van Grondelle, R., Varghese, R., Venkatramani, R. & Watts, A., 1 Apr 2018, In : Faraday Discussions. 207, p. 491-512

Research output: Contribution to JournalEditorialAcademicpeer-review

Correction to: The phycobilisome terminal emitter transfers its energy with a rate of (20 ps)–1 to photosystem II

Acuña, A. M., van Alphen, P., van Grondelle, R. & van Stokkum, I. H. M., 28 Mar 2018, In : Photosynthetica. p. 1-1 1 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Photosystem II Protein Complex
Energy Transfer
energy transfer
Charge transfer
Photosystem I Protein Complex
Light
Energy Transfer
Antennas

Energy dissipation mechanisms in the FCPb light-harvesting complex of the diatom Cyclotella meneghiniana

Elnour, H. M. A. M., Dietzel, L., Ramanan, C., Büchel, C., van Grondelle, R. & Krüger, T. P. J., Oct 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 10, p. 1151-1160 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Diatoms
Quenching
Energy dissipation
Chlorophyll Binding Proteins
Light

Energy transfer and trapping in Synechococcus WH 7803

Acuña, A. M., Lemaire, C., van Grondelle, R., Robert, B. & van Stokkum, I. H. M., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 115-124 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

From isolated light-harvesting complexes to the thylakoid membrane: a single-molecule perspective

Gruber, J. M., Maly, P., Kruger, T. P. J. & van Grondelle, R., Jan 2018, In : NANOPHOTONICS. 7, 1, p. 81-92

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Interplay of disorder and delocalization in photosynthetic light harvesting

Pavel, M. & van Grondelle, R., Dec 2018, In : Current Opinion in Chemical Biology. 47, p. 1-6 6 p.

Research output: Contribution to JournalReview articleAcademicpeer-review

Light
Photosynthesis
Energy Transfer
Energy transfer
Switches

Light Harvesting in Photosynthesis

Croce, R. (ed.), van Grondelle, R. (ed.), van Amerongen, H. (ed.) & van Stokkum, I. (ed.), Feb 2018, Boca Rata: CRC Press. 611 p.

Research output: Book / ReportBook editingAcademic

algae
photosynthesis
energy transfer
pigments
electron transfer

Light induced charge and energy transport in nucleic acids and proteins: general discussion

Chattopadhyay, A., Cogdell, R., Crespo-Hernandez, C. E., Datta, A., De, A., Haacke, S., Hariharan, M., Helliwell, J., Hughes, A., Improta, R., Jones, M., Joseph, J., Karsili, T., Kohler, B., Krishnan, R., Kuriakose, A., Mahil, L., Markovitsi, D., Medhi, H., Periyasamy, G. & 13 othersPradeepkumar, P. I., Chowdhury, P. R., Sarangi, M., Schapiro, I., Schertler, G. F. X., Schlichting, I., Segarra-Marti, J., Swaminathan, R., Vishnu, V., Van Grondelle, R., Venkatraman, R. K., Venkatramani, R. & Watts, A., 1 Apr 2018, In : Faraday Discussions. 207, p. 153-180

Research output: Contribution to JournalEditorialAcademicpeer-review

Light induced damage and repair in nucleic acids and proteins: general discussion

Chandra, A., Cogdell, R., Crespo-Hernandez, C. E., Datta, A., Giussani, A., Haacke, S., Helliwell, J., Improta, R., Jayasree, R. S., Jones, M., Karsili, T., Kohler, B., Mahil, L., Mandal, I., Markovitsi, D., Medhi, H., Mishra, P. P., Pradeepkumar, P. I., Chowdhury, P. R., Sarangi, M. & 7 othersSchapiro, I., Schlichting, I., Segarra-Marti, J., Sharma, A., Vishnu, V., van Grondelle, R. & Watts, A., 1 Apr 2018, In : Faraday Discussions. 207, p. 389-408

Research output: Contribution to JournalEditorialAcademicpeer-review

Mechanistic Regimes of Vibronic Transport in a Heterodimer and the Design Principle of Incoherent Vibronic Transport in Phycobiliproteins

Bennett, D. I. G., Malý, P., Kreisbeck, C., Van Grondelle, R. & Aspuru-Guzik, A., 17 May 2018, In : Journal of Physical Chemistry Letters. 9, 10, p. 2665-2670 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phycobiliproteins
pigments
Pigments
Excited states
proteins

Oxygenic Photoreactivity in Photosystem II Studied by Rotating Ring Disk Electrochemistry

Kornienko, N., Zhang, J. Z., Sokol, K. P., Lamaison, S., Fantuzzi, A., Van Grondelle, R., Rutherford, A. W. & Reisner, E., 26 Dec 2018, In : Journal of the American Chemical Society. 140, 51, p. 17923-17931 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photoreactivity
Electrochemistry
Photosystem II Protein Complex
Electrodes
Chlorophyll

Photocrosslinking between nucleic acids and proteins: general discussion

Bhat, V., Cogdell, R., Crespo-Hernandez, C. E., Datta, A., De, A., Haacke, S., Helliwell, J., Improta, R., Joseph, J., Karsili, T., Kohler, B., Krishnan, R., Mahil, L., Lewis, F., Mandal, I., Markovitsi, D., Mishra, P. P., Paul, S., Periyasamy, G., Pradeepkumar, P. I. & 12 othersChowdhury, P. R., Sarangi, M., Sasikumar, D., Schapiro, I., Schertler, G. F. X., Schlichting, I., Segarra-Marti, J., Swaminathan, R., Vishnu, V., Van Grondelle, R., Varghese, R. & Venkatramani, R., 1 Apr 2018, In : Faraday Discussions. 207, p. 283-306

Research output: Contribution to JournalEditorialAcademicpeer-review

Photoinduced processes in nucleic acids and proteins: Concluding remarks

van Grondelle, R., 22 Mar 2018, In : Faraday Discussions. 207, p. 513-521 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

nucleic acids
Nucleic Acids
photosynthesis
Photosynthesis
proteins

Phycocyanin: One Complex, Two States, Two Functions

Gwizdala, M., Krüger, T. P. J., Wahadoszamen, M., Gruber, J. M. & Van Grondelle, R., 15 Mar 2018, In : Journal of Physical Chemistry Letters. 9, 6, p. 1365-1371 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phycocyanin
pigments
Pigments
Energy transfer
energy transfer

Robust light harvesting by a noisy antenna

Malý, P., Gardiner, A. T., Cogdell, R. J., Van Grondelle, R. & Mančal, T., 14 Feb 2018, In : Physical Chemistry Chemical Physics. 20, 6, p. 4360-4372 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
pigments
Pigments
antennas
Antennas
proteins

Role of system-bath interaction timescale in photosynthetic excitation energy transfer

Malý, P., 2018, 217 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Spectrally decomposed dark-to-light transitions in a PSI-deficient mutant of Synechocystis sp. PCC 6803

Acuña, A. M., van Alphen, P., Branco dos Santos, F., van Grondelle, R., Hellingwerf, K. J. & van Stokkum, I. H. M., Feb 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 2, p. 57-68 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Synechocystis
Fluorescence
Light
Phycobilisomes
Photosynthetic Reaction Center Complex Proteins

Spectrally decomposed dark-to-light transitions in Synechocystis sp. PCC 6803

Acuña, A. M., van Alphen, P., Branco Dos Santos, F., van Grondelle, R., Hellingwerf, K. J. & van Stokkum, I. H. M., 29 Mar 2018, In : Photosynthesis Research. p. 1-14 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Synechocystis sp. PCC 6803
Synechocystis
Energy Transfer
Energy transfer
Dark Adaptation

Switching an Individual Phycobilisome off and on

Gwizdala, M., Botha, J. L., Wilson, A., Kirilovsky, D., Van Grondelle, R. & Krüger, T. P. J., 3 May 2018, In : Journal of Physical Chemistry Letters. 9, 9, p. 2426-2432 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

carotenoids
Carotenoids
proteins
Proteins
luminous intensity

The future of quantum biology

Marais, A., Adams, B., Ringsmuth, A. K., Ferretti, M., Gruber, J. M., Hendrikx, R., Schuld, M., Smith, S. L., Sinayskiy, I., Krüger, T. P. J., Petruccione, F. & van Grondelle, R., 14 Nov 2018, In : Journal of the Royal Society, Interface. 15, 148, p. 1-14 14 p.

Research output: Contribution to JournalReview articleAcademicpeer-review

Biological Phenomena
Physics
Biological systems
Direction compound

The phycobilisome terminal emitter transfers its energy with a rate of (20 ps)–1 to photosystem II

Acuña, A. M., Van Alphen, P., Van Grondelle, R. & Van Stokkum, I. H. M., Mar 2018, In : Photosynthetica. 56, 1, p. 265-274 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Photosystem II Protein Complex
Energy Transfer
energy transfer

Uphill energy transfer in photosystem I from Chlamydomonas reinhardtii. Time-resolved fluorescence measurements at 77 K

Giera, W., Szewczyk, S., McConnell, M. D., Redding, K. E., van Grondelle, R. & Gibasiewicz, K., 4 Apr 2018, In : Photosynthesis Research. p. 1-15 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photosystem I Protein Complex
Chlamydomonas reinhardtii
Energy Transfer
photosystem I
Chlorophyll

Vibronic Coherence in the Charge Separation Process of the Rhodobacter sphaeroides Reaction Center

Ma, F., Romero, E., Jones, M. R., Novoderezhkin, V. I. & van Grondelle, R., Apr 2018, In : Journal of Physical Chemistry Letters. 9, 8, p. 1827-1832 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
polarization (charge separation)
bacteria
vibration mode
synchronism
electron transfer
2017

2-D Electronic Spectroscopy on the light-dependent enzyme protochlorophyllide oxidoreductase

Romero, E., Farmer, D. A., Hunter, C. N. & van Grondelle, R., Jul 2017, In : European Biophysics Journal. 46, p. S205-S205

Research output: Contribution to JournalMeeting AbstractAcademic

Achieving Exciton Delocalization in Quantum Dot Aggregates Using Organic Linker Molecules

Cohen, E., Gdor, I., Romero, E., Yochelis, S., van Grondelle, R. & Paltiel, Y., 2 Mar 2017, In : Journal of Physical Chemistry Letters. 8, 5, p. 1014-1018

Research output: Contribution to JournalArticleAcademicpeer-review

A four state parametric model for the kinetics of the non-photochemical quenching in Photosystem II

Snellenburg, J. J., Johnson, M. P., Ruban, A. V., van Grondelle, R. & van Stokkum, I. H. M., Oct 2017, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1858, 10, p. 854-864

Research output: Contribution to JournalArticleAcademicpeer-review

Photosystem I Protein Complex
Chlamydomonas reinhardtii
Photosystem II Protein Complex
Excited states
Light-Harvesting Protein Complexes

Analysis of fluorescence spectra in cyanobacteria from picoseconds to minutes

Acuña Sánchez, A. M., 2017, 241 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Comparison of excitation energy transfer in cyanobacterial photosystem I in solution and immobilized on conducting glass

Szewczyk, S., Giera, W., D'Haene, S., van Grondelle, R. & Gibasiewicz, K., May 2017, In : Photosynthesis Research. 132, 2, p. 111-126

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Direct Observation of Energy Detrapping in LH1-RC Complex by Two-Dimensional Electronic Spectroscopy

Ma, F., Yu, L-J., Hendrikx, R., Wang-Otomo, Z-Y. & van Grondelle, R., 18 Jan 2017, In : Journal of the American Chemical Society. 139, 2, p. 591-594

Research output: Contribution to JournalArticleAcademicpeer-review

Evidence for coherent mixing of excited and charge-transfer states in the major plant light-harvesting antenna, LHCII

Ramanan, C., Ferretti, M., van Roon, H., Novoderezhkin, V. I. & van Grondelle, R., 14 Sep 2017, In : Physical Chemistry Chemical Physics - PCCP. 19, 34, p. 22877-22886

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Excitonic and Vibrational Coherence in the Excitation Relaxation Process of Two LH1 Complexes as Revealed by Two-Dimensional Electronic Spectroscopy

Ma, F., Yu, L-J., Hendrikx, R., Wang-Otomo, Z-Y. & van Grondelle, R., 15 Jun 2017, In : Journal of Physical Chemistry Letters. 8, 12, p. 2751-2756

Research output: Contribution to JournalArticleAcademicpeer-review

Exciton-vibrational resonance and dynamics of charge separation in the photosystem II reaction center

Novoderezhkin, V. I., Romero, E., Prior, J. & van Grondelle, R., 21 Feb 2017, In : Physical Chemistry Chemical Physics - PCCP. 19, 7, p. 5195-5208

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Hacking Photosynthesis

Friebe, V. M., 2017, 163 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

How reduced excitonic coupling enhances light harvesting in the main photosynthetic antennae of diatoms

Kruger, T. P. J., Maly, P., Alexandre, M. T. A., Mancal, T., Buechel, C. & van Grondelle, R., 26 Dec 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 52, p. E11063-E11071

Research output: Contribution to JournalArticleAcademic

Light Absorption and Energy Transfer in the Antenna Complexes of Photosynthetic Organisms

Mirkovic, T., Ostroumov, E. E., Anna, J. M., van Grondelle, R., Govindjee & Scholes, G. D., 25 Jan 2017, In : Chemical Reviews. 117, 2, p. 249-293

Research output: Contribution to JournalArticleAcademicpeer-review

Limits on Natural Photosynthesis

van Grondelle, R. & Boeker, E., 3 Aug 2017, In : Journal of Physical Chemistry B. 121, 30, p. 7229-7234

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Metal Cations Induced alpha beta-BChl a Heterogeneity in LH1 as Revealed by Temperature-Dependent Fluorescence Splitting

Ma, F., Yu, L-J., Llansola-Portoles, M. J., Robert, B., Wang-Otomo, Z-Y. & van Grondelle, R., 18 Aug 2017, In : ChemPhysChem. 18, 16, p. 2295-2301

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling energy transfer and trapping in the thylakoid membrane

Snellenburg, J., 2017, 226 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

On the performance of a photosystem II reaction centre-based photocell

Stones, R., Hossein-Nejad, H., van Grondelle, R. & Olaya-Castro, A., 1 Oct 2017, In : Chemical Science. 8, 10, p. 6871-6880

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access