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2011

Enzyme activation and catalysis: characterisation of the vibrational modes of substrate and product in protochlorophyllide oxidoreductase

Sytina, O., Alexandre, M. T., Heyes, D. J., Hunter, C. N., Robert, B., van Grondelle, R. & Groot, M. L., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 6, p. 2307 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Protochlorophyllide
Catalysis
Oxidoreductases
Photons
Chemical activation

Excitation energy transfer and non-photochemical quenching in photosynthesis

van Grondelle, R., 2011, In : European Biophysics Journal. 40, 1, p. 180

Research output: Contribution to JournalArticleAcademicpeer-review

Excitation Migration, Quenching, and Regulation of Photosynthetic Light Harvesting in Photosystem II

Valkunas, L., Chmeliov, J., Trinkunas, G., Duffy, C. D. P., van Grondelle, R. & Ruban, A. V., 2011, In : Journal of Physical Chemistry B. 115, 29, p. 9252-9260

Research output: Contribution to JournalArticleAcademicpeer-review

Photosystem II Protein Complex
Quenching
quenching
excitation
Excitation energy

Flow of excitation energy in the cryptophyte light-harvesting antenna phycocyanin 645.

Marin, A., Doust, A. B., Scholes, G. D., Wilk, K. E., Curmi, P. M. G., van Stokkum, I. H. M. & van Grondelle, R., 2011, In : Biophysical Journal. 101, 4, p. 1004-1113

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Bile Pigments
Light
Energy Transfer
Phycobiliproteins
Photosynthetic Reaction Center Complex Proteins

Fluorescence dynamics of plant light harvesting complexes studied by single molecule spectroscopy

Ilioaia, C., Kruger, T. P. J., Johnson, M. P., Horton, P., Ruban, A. V. & van Grondelle, R., 2011, In : European Biophysics Journal. 40, 1, p. 176-177

Research output: Contribution to JournalArticleAcademicpeer-review

From Disorder to Order: The Functional Flexibility of Single Plant Light-Harvesting Complexes

Kruger, T. P. J., 2011

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Intra- and inter-monomeric transfers in the light harvesting LHCII complex: the Redfield-Forster picture

Novoderezhkin, V. I., Marin, A. & van Grondelle, R., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 38, p. 17093-17103

Research output: Contribution to JournalArticleAcademicpeer-review

chlorophylls
dichroism
trimers
energy transfer
dimers

Lessons from nature about solar light harvesting

Scholes, G. D., Fleming, G. R., Olaya-Castro, A. & van Grondelle, R., 2011, In : Nature Chemistry. 3, 10, p. 763-774

Research output: Contribution to JournalArticleAcademicpeer-review

Antennas
Photosynthesis
Excitation energy
Chromophores
Excitons

Minor Complexes at Work: Light-Harvesting by Carotenoids in the Photosystem II Antenna Complexes CP24 and CP26

Marin, A., Passarini, F., van Stokkum, I. H. M., van Grondelle, R. & Croce, R., 2011, In : Biophysical Journal. 100, 11, p. 2829-2838 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photosystem II Protein Complex
Carotenoids
Chlorophyll
Light
Methyl Green

Modeling of Multi-Exciton Transient Absorption Spectra of Protochlorophyllide Aggregates in Aqueous Solution

Sytina, O., Novoderezhkin, V. I., van Grondelle, R. & Groot, M. L., 2011, In : Journal of Physical Chemistry A. 115, 43, p. 11944-11951

Research output: Contribution to JournalArticleAcademicpeer-review

Protochlorophyllide
Absorption spectra
excitons
aqueous solutions
absorption spectra

Molecular Adaptation of Photoprotection: Triplet States in Light-Harvesting Proteins

Gall, A., Berera, R., Alexandre, M. T. A., Pascal, A. A., Bordes, L., Mendes-Pinto, M. M., Andrianambinintsoa, S., Stoitchkova, K. V., Marin, A., Valkunas, L., Horton, P., Kennis, J. T. M., van Grondelle, R., Ruban, A. & Robert, B., 2011, In : Biophysical Journal. 101, 4, p. 934-942

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Carotenoids
Light
Proteobacteria
Chlorophyll
Proteins

Multiple charge separation pathways in photosystem II: modeling of transient absorption kinetics.

Novoderezhkin, V. I., Romero Mesa, E., Dekker, J. P. & van Grondelle, R., 2011, In : Chemical Physics. 12, p. 681-688

Research output: Contribution to JournalArticleAcademicpeer-review

On the involvement of Single-Bond Rotation in the Primary Photochemistry of Photoactive Yellow Protein

Stahl, A. D., Hospes, M., Singhal, K., van Stokkum, I. H. M., van Grondelle, R., Groot, M. L. & Hellingwerf, K. J., 2011, In : Biophysical Journal. 101, 5, p. 1184-1192

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Photochemistry
Proteins
single bond

Origin of Absorption Changes Associated with Photoprotective Energy Dissipation in the Absence of Zeaxanthin

Ilioaia, C., Johnson, M. P., Duffy, C. D. P., Pascal, A. A., van Grondelle, R., Robert, B. & Ruban, A. V., 2011, In : Journal of Biological Chemistry. 286, 1, p. 91-98

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Energy dissipation
Light
Quenching
Protonation
Photosynthetic membranes

Photoprotection in Plants Involves a Change in Lutein 1 Binding Domain in the Major Light-harvesting Complex of Photosystem II

Ilioaia, C., Johnson, M. P., Liao, P. N., Pascal, A. A., van Grondelle, R., Walla, P. J., Ruban, A. V. & Robert, B., 2011, In : Journal of Biological Chemistry. 286, 31, p. 27247-27254

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Lutein
Photosystem II Protein Complex
Carotenoids
Light
Pigments

Proton transfer events in GFP

Di Donato, M., van Wilderen, L. J. G. W., van Stokkum, I. H. M., Cohen Stuart, T. A., Kennis, J. T. M., Hellingwerf, K. J., van Grondelle, R. & Groot, M. L., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 36, p. 16295-16305

Research output: Contribution to JournalArticleAcademicpeer-review

Proton transfer
Green Fluorescent Proteins
Protons
Wire
Methyl Green

Single and multi-exciton dynamics in aqueous protochlorophyllide aggregates

Sytina, O., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3936-3946 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Protochlorophyllide
excitons
enzymes
Chlorophyllides
fluorescence

Structure-function relationship in photosynthetic and photo-active proteins: A mid-Infrared investigation with femtosecond time resolution

Stahl, A. D., 2011

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

The Electronic Structure of Photosystem II: Charge Separation Dynamics

Romero Mesa, E., 2011

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy

van Stokkum, I. H. M., Gauden, M., Crosson, S., van Grondelle, R., Moffat, K. & Kennis, J. T. M., 2011, In : Photochemistry and Photobiology. 87, 3, p. 534-541 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phototropins
Emission spectroscopy
Flavin Mononucleotide
Spectrum Analysis
Light
carotenoids
chlorophylls
energy transfer
shift
electronics

Wave-length-modulated femtosecond stimulated raman spectroscopy-approach towards automatic data processing

Kloz, M., van Grondelle, R. & Kennis, J. T. M., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 40, p. 18123-18133

Research output: Contribution to JournalArticleAcademicpeer-review

Raman spectroscopy
wavelength
carotenoid
experiment
bleaching
2010
Tryptophan
Tyrosine
Infrared spectroscopy
Bacteriochlorophylls
Accessories

Effect of the P700 pre-oxidation and point mutations near A0 on the reversibility of the primary charge separation in photosystem I from Chlamydomonas reinhardtii

Giera, W., Ramesh, V. M., Webber, A. N., van Stokkum, I. H. M., van Grondelle, R. & Gibasiewicz, K., 2010, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1797, p. 106-112

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photosystem I Protein Complex
Chlamydomonas reinhardtii
Point Mutation
Oxidation
Excitation energy

Electronic and protein structural dynamics of a photosensory LOV histidine kinase

Alexandre, M. T. A., Purcell, E. B., van Grondelle, R., Robert, B., Kennis, J. T. M. & Crosson, S., 2010, In : Biochemistry. 49, p. 4752-4759

Research output: Contribution to JournalArticleAcademicpeer-review

Structural dynamics
Histidine
Phosphotransferases
Proteins
Spectrum Analysis

Energy Transfer Pathways in the CP24 and CP26 Antenna Complexes of Higher Plant Photosystem II: A Comparative Study

Marin, A., Passarini, F., Croce, R. & van Grondelle, R., 2010, In : Biophysical Journal. 99, 12, p. 4056-4065 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Plant Structures
Photosystem II Protein Complex
Sunlight
Energy Transfer
Photosynthesis

Enzymatic Activity and Excited State Processes in Protochlorophyllide Oxidoreductase

Sytina, O., 2010, 187 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Excitation Dynamics in Phycoerythrin 545: Modeling of Steady-State Spectra and Transient Absorption with Modified Redfield Theory

Novoderezhkin, V. I., Doust, A. B., Curutchet, C., Scholes, G. D. & van Grondelle, R., 2010, In : Biophysical Journal. 99, p. 344-352

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobiliproteins
Bile Pigments
Fluorescence Polarization
Energy Transfer
Circular Dichroism

Fluorescence Spectral Dynamics of Single LHCII Trimers

Kruger, T. P. J., Novoderezhkin, V. I., Ilioaia, C. & van Grondelle, R., 2010, In : Biophysical Journal. 98, p. 3093-3101 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Fluorescence
Protein Conformation
Chlorophyll
Light
Temperature
Chlorophyll
Excited states
Energy transfer
Chlorophyll Binding Proteins
Infrared radiation

Light Activation Mechanisms of Regulation of Photosynthesis in Bacteria

Toh, K. C., 2010

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Physical origins and models of energy transfer in photosynthetic light-harvesting

Novoderezhkin, V. I. & van Grondelle, R., 2010, In : Physical Chemistry Chemical Physics - PCCP. 12, p. 7352-7365

Research output: Contribution to JournalArticleAcademicpeer-review

antennas
energy transfer
algae

Protochlorophyllide excited-state dynamics in organic solvents studied by time-resolved visible and mid-infrared spectroscopy

Sytina, O. A., van Stokkum, I. H. M., Heyes, D. J., Hunter, C. N., van Grondelle, R. & Groot, M. L., 2010, In : Journal of Physical Chemistry B. 114, p. 4335-4344

Research output: Contribution to JournalArticleAcademicpeer-review

Revisiting the optical properties of the FMO protein

milder, M. T. W., Bruggemann, B., van Grondelle, R. & Herek, J. L., 2010, In : Photosynthesis Research. 104, p. 257-274

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
optical properties
Optical properties
Proteins
proteins

Stalking Electrons in Demanding Environments

Cohen Stuart, T. A., 2010

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Structural and Spectroscopic Consequences of Hexacoordination of a Bacteriochlorophyll Cofactor in the Rhodobacter sphaeroides Reaction Center

Frolov, D., Marsh, M., Crouch, L. I., Fyfe, P. K., Robert, B., van Grondelle, R., Hadfield, A. & Jones, M. R., 2010, In : Biochemistry. 49, p. 1882-1892

Research output: Contribution to JournalArticleAcademicpeer-review

Bacteriochlorophylls
Rhodobacter sphaeroides
Mutagenesis
X ray crystallography
X Ray Crystallography

The light-harvesting function of carotenoids in the cyanobacterial stress-inducible IsiA complex

Berera, R., van Stokkum, I. H. M., Kennis, J. T. M., van Grondelle, R. & Dekker, J. P., 2010, In : Chemical Physics. 373, p. 65-70

Research output: Contribution to JournalArticleAcademicpeer-review

carotenoids
Carotenoids
pigments
Pigments
Energy transfer

Two different charge-separation pathways in photosystem II

Romero, E., van Stokkum, I. H. M., Novoderezhkin, V. I., Dekker, J. P. & van Grondelle, R., 2010, In : Biochemistry. 49, p. 4300-4307

Research output: Contribution to JournalArticleAcademicpeer-review

File
Solar Energy
Photosystem II Protein Complex
Spinacia oleracea
Photosynthesis
Excited states