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2019

Both electronic and vibrational coherences are involved in primary electron transfer in bacterial reaction center

Ma, F., Romero, E., Jones, M. R., Novoderezhkin, V. I. & van Grondelle, R., 25 Feb 2019, In : Nature Communications. 10, p. 1-9 9 p., 933.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
electron transfer
Electrons
electronics
Rhodobacter sphaeroides
Proteobacteria

Electron-vibrational coupling decreases trapping by low-energy states in photosynthesis

Malý, P., Novoderezhkin, V. I., van Grondelle, R. & Mančal, T., 1 Jun 2019, In : Chemical Physics. 522, p. 69-76 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

photosynthesis
Photosynthesis
Excitation energy
Electron energy levels
trapping

Photosynthesis in intact Chlamydomonas reinhardtii studied by time-resolved fluorescence spectroscopy

Wlodarczyk, L. M., 2019, 192 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Stark fluorescence spectroscopy on peridinin–chlorophyll–protein complex of dinoflagellate, Amphidinium carterae

Ara, A. M., Shakil Bin Kashem, M., van Grondelle, R. & Wahadoszamen, M., 1 Jan 2019, In : Photosynthesis Research.

Research output: Contribution to JournalArticleAcademicpeer-review

Strong plasmonic fluorescence enhancement of individual plant light-harvesting complexes

Kyeyune, F., Botha, J. L., Van Heerden, B., Malý, P., Van Grondelle, R., Diale, M. & Krüger, T. P. J., 28 Aug 2019, In : Nanoscale. 11, 32, p. 15139-15146 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fluorescence
Luminance
Pigments
Surface plasmon resonance
Hybrid systems

The role of far-red spectral states in the energy regulation of phycobilisomes

Krüger, T. P. J., van Grondelle, R. & Gwizdala, M., 1 Apr 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 4, p. 341-349 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phycobilisomes
Carotenoids
Pigments
Phycobilins
Quenching
2018

A functional compartmental model of the Synechocystis PCC 6803 phycobilisome

van Stokkum, I. H. M., Gwizdala, M., Tian, L., Snellenburg, J. J., van Grondelle, R., van Amerongen, H. & Berera, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 87-102 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Apoprotein heterogeneity increases spectral disorder and a step-wise modification of the B850 fluorescence peak position

Ilioaia, C., Krüger, T. P. J., Ilioaia, O., Robert, B., van Grondelle, R. & Gall, A., Feb 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 2, p. 137-144 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Apoproteins
Fluorescence
Photons
Light
Rhodopseudomonas

Between order and disorder: The supramolecular organization of photosynthetic membrane

Sznee, K. E., 2018, 145 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Bionanophotonics: general discussion

Chandra, A., Chattopadhyay, A., Cogdell, R., Datta, A., De, A., Dhamija, S., Golla, M., Haacke, S., Hariharan, M., Helliwell, J., Improta, R., Jayasree, R. S., Jones, M., Joseph, J., Karsili, T., Kohler, B., Krishnan, R., Mandal, I., Markovitsi, D., Medhi, H. & 12 othersMishra, P. P., Chowdhury, P. R., Sarangi, M., Schlichting, I., Seddon, J., Sharma, A., Siriki, A., Swaminathan, R., van Grondelle, R., Varghese, R., Venkatramani, R. & Watts, A., 1 Apr 2018, In : Faraday Discussions. 207, p. 491-512

Research output: Contribution to JournalEditorialAcademicpeer-review

Correction to: The phycobilisome terminal emitter transfers its energy with a rate of (20 ps)–1 to photosystem II

Acuña, A. M., van Alphen, P., van Grondelle, R. & van Stokkum, I. H. M., 28 Mar 2018, In : Photosynthetica. p. 1-1 1 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Photosystem II Protein Complex
Energy Transfer
energy transfer
Charge transfer
Photosystem I Protein Complex
Light
Energy Transfer
Antennas

Energy dissipation mechanisms in the FCPb light-harvesting complex of the diatom Cyclotella meneghiniana

Elnour, H. M. A. M., Dietzel, L., Ramanan, C., Büchel, C., van Grondelle, R. & Krüger, T. P. J., Oct 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 10, p. 1151-1160 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Diatoms
Quenching
Energy dissipation
Chlorophyll Binding Proteins
Light

Energy transfer and trapping in Synechococcus WH 7803

Acuña, A. M., Lemaire, C., van Grondelle, R., Robert, B. & van Stokkum, I. H. M., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 115-124 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

From isolated light-harvesting complexes to the thylakoid membrane: a single-molecule perspective

Gruber, J. M., Maly, P., Kruger, T. P. J. & van Grondelle, R., Jan 2018, In : NANOPHOTONICS. 7, 1, p. 81-92

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Interplay of disorder and delocalization in photosynthetic light harvesting

Pavel, M. & van Grondelle, R., Dec 2018, In : Current Opinion in Chemical Biology. 47, p. 1-6 6 p.

Research output: Contribution to JournalReview articleAcademicpeer-review

Light
Photosynthesis
Energy Transfer
Energy transfer
Switches

Light Harvesting in Photosynthesis

Croce, R. (ed.), van Grondelle, R. (ed.), van Amerongen, H. (ed.) & van Stokkum, I. (ed.), Feb 2018, Boca Rata: CRC Press. 611 p.

Research output: Book / ReportBook editingAcademic

algae
photosynthesis
energy transfer
pigments
electron transfer

Light induced charge and energy transport in nucleic acids and proteins: general discussion

Chattopadhyay, A., Cogdell, R., Crespo-Hernandez, C. E., Datta, A., De, A., Haacke, S., Hariharan, M., Helliwell, J., Hughes, A., Improta, R., Jones, M., Joseph, J., Karsili, T., Kohler, B., Krishnan, R., Kuriakose, A., Mahil, L., Markovitsi, D., Medhi, H., Periyasamy, G. & 13 othersPradeepkumar, P. I., Chowdhury, P. R., Sarangi, M., Schapiro, I., Schertler, G. F. X., Schlichting, I., Segarra-Marti, J., Swaminathan, R., Vishnu, V., Van Grondelle, R., Venkatraman, R. K., Venkatramani, R. & Watts, A., 1 Apr 2018, In : Faraday Discussions. 207, p. 153-180

Research output: Contribution to JournalEditorialAcademicpeer-review

Light induced damage and repair in nucleic acids and proteins: general discussion

Chandra, A., Cogdell, R., Crespo-Hernandez, C. E., Datta, A., Giussani, A., Haacke, S., Helliwell, J., Improta, R., Jayasree, R. S., Jones, M., Karsili, T., Kohler, B., Mahil, L., Mandal, I., Markovitsi, D., Medhi, H., Mishra, P. P., Pradeepkumar, P. I., Chowdhury, P. R., Sarangi, M. & 7 othersSchapiro, I., Schlichting, I., Segarra-Marti, J., Sharma, A., Vishnu, V., van Grondelle, R. & Watts, A., 1 Apr 2018, In : Faraday Discussions. 207, p. 389-408

Research output: Contribution to JournalEditorialAcademicpeer-review

Mechanistic Regimes of Vibronic Transport in a Heterodimer and the Design Principle of Incoherent Vibronic Transport in Phycobiliproteins

Bennett, D. I. G., Malý, P., Kreisbeck, C., Van Grondelle, R. & Aspuru-Guzik, A., 17 May 2018, In : Journal of Physical Chemistry Letters. 9, 10, p. 2665-2670 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phycobiliproteins
pigments
Pigments
Excited states
proteins

Oxygenic Photoreactivity in Photosystem II Studied by Rotating Ring Disk Electrochemistry

Kornienko, N., Zhang, J. Z., Sokol, K. P., Lamaison, S., Fantuzzi, A., Van Grondelle, R., Rutherford, A. W. & Reisner, E., 26 Dec 2018, In : Journal of the American Chemical Society. 140, 51, p. 17923-17931 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photoreactivity
Electrochemistry
Photosystem II Protein Complex
Electrodes
Chlorophyll

Photocrosslinking between nucleic acids and proteins: general discussion

Bhat, V., Cogdell, R., Crespo-Hernandez, C. E., Datta, A., De, A., Haacke, S., Helliwell, J., Improta, R., Joseph, J., Karsili, T., Kohler, B., Krishnan, R., Mahil, L., Lewis, F., Mandal, I., Markovitsi, D., Mishra, P. P., Paul, S., Periyasamy, G., Pradeepkumar, P. I. & 12 othersChowdhury, P. R., Sarangi, M., Sasikumar, D., Schapiro, I., Schertler, G. F. X., Schlichting, I., Segarra-Marti, J., Swaminathan, R., Vishnu, V., Van Grondelle, R., Varghese, R. & Venkatramani, R., 1 Apr 2018, In : Faraday Discussions. 207, p. 283-306

Research output: Contribution to JournalEditorialAcademicpeer-review

Photoinduced processes in nucleic acids and proteins: Concluding remarks

van Grondelle, R., 22 Mar 2018, In : Faraday Discussions. 207, p. 513-521 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

nucleic acids
Nucleic Acids
photosynthesis
Photosynthesis
proteins

Phycocyanin: One Complex, Two States, Two Functions

Gwizdala, M., Krüger, T. P. J., Wahadoszamen, M., Gruber, J. M. & Van Grondelle, R., 15 Mar 2018, In : Journal of Physical Chemistry Letters. 9, 6, p. 1365-1371 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Phycocyanin
pigments
Pigments
Energy transfer
energy transfer

Robust light harvesting by a noisy antenna

Malý, P., Gardiner, A. T., Cogdell, R. J., Van Grondelle, R. & Mančal, T., 14 Feb 2018, In : Physical Chemistry Chemical Physics. 20, 6, p. 4360-4372 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
pigments
Pigments
antennas
Antennas
proteins

Role of system-bath interaction timescale in photosynthetic excitation energy transfer

Malý, P., 2018, 217 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Spectrally decomposed dark-to-light transitions in a PSI-deficient mutant of Synechocystis sp. PCC 6803

Acuña, A. M., van Alphen, P., Branco dos Santos, F., van Grondelle, R., Hellingwerf, K. J. & van Stokkum, I. H. M., Feb 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 2, p. 57-68 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Synechocystis
Fluorescence
Light
Phycobilisomes
Photosynthetic Reaction Center Complex Proteins

Spectrally decomposed dark-to-light transitions in Synechocystis sp. PCC 6803

Acuña, A. M., van Alphen, P., Branco Dos Santos, F., van Grondelle, R., Hellingwerf, K. J. & van Stokkum, I. H. M., 29 Mar 2018, In : Photosynthesis Research. p. 1-14 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Synechocystis sp. PCC 6803
Synechocystis
Energy Transfer
Energy transfer
Dark Adaptation

Switching an Individual Phycobilisome off and on

Gwizdala, M., Botha, J. L., Wilson, A., Kirilovsky, D., Van Grondelle, R. & Krüger, T. P. J., 3 May 2018, In : Journal of Physical Chemistry Letters. 9, 9, p. 2426-2432 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

carotenoids
Carotenoids
proteins
Proteins
luminous intensity

The future of quantum biology

Marais, A., Adams, B., Ringsmuth, A. K., Ferretti, M., Gruber, J. M., Hendrikx, R., Schuld, M., Smith, S. L., Sinayskiy, I., Krüger, T. P. J., Petruccione, F. & van Grondelle, R., 14 Nov 2018, In : Journal of the Royal Society, Interface. 15, 148, p. 1-14 14 p.

Research output: Contribution to JournalReview articleAcademicpeer-review

Biological Phenomena
Physics
Biological systems
Direction compound

The phycobilisome terminal emitter transfers its energy with a rate of (20 ps)–1 to photosystem II

Acuña, A. M., Van Alphen, P., Van Grondelle, R. & Van Stokkum, I. H. M., Mar 2018, In : Photosynthetica. 56, 1, p. 265-274 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Photosystem II Protein Complex
Energy Transfer
energy transfer

Uphill energy transfer in photosystem I from Chlamydomonas reinhardtii. Time-resolved fluorescence measurements at 77 K

Giera, W., Szewczyk, S., McConnell, M. D., Redding, K. E., van Grondelle, R. & Gibasiewicz, K., 4 Apr 2018, In : Photosynthesis Research. p. 1-15 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Photosystem I Protein Complex
Chlamydomonas reinhardtii
Energy Transfer
photosystem I
Chlorophyll

Vibronic Coherence in the Charge Separation Process of the Rhodobacter sphaeroides Reaction Center

Ma, F., Romero, E., Jones, M. R., Novoderezhkin, V. I. & van Grondelle, R., Apr 2018, In : Journal of Physical Chemistry Letters. 9, 8, p. 1827-1832 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
polarization (charge separation)
bacteria
vibration mode
synchronism
electron transfer
2016

A method to decompose spectral changes in Synechocystis PCC 6803 during light-induced state transitions

Acuña, A. M., Kana, R., Gwizdala, M. S., Snellenburg, J. J., van Alphen, P., van Oort, B. F., Kirilovsky, D., van Grondelle, R. & van Stokkum, I. H. M., 2016, In : Photosynthesis Research. 130, 1-3, p. 237-249

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
Synechocystis
phycobilisome
Fluorometry
Plastoquinone

Competing charge transfer pathways at the photosystem II-electrode interface

Zhang, J. Z., Sokol, K. P., Paul, N., Romero, E., Van Grondelle, R. & Reisner, E., 1 Dec 2016, In : Nature Chemical Biology. 12, 12, p. 1046-1052 7 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Controlling Light Harvesting with Light

Gwizdala, M. S., Berera, R., Kirilovsky, D., van Grondelle, R. & Kruger, T. P. J., 2016, In : Journal of the American Chemical Society. 138, 36, p. 11616-11622

Research output: Contribution to JournalArticleAcademicpeer-review

Solar energy
Electron energy levels
Fluorescence
Switches
Antennas

Dark States in the Light-Harvesting complex 2 Revealed by Two-dimensional Electronic Spectroscopy

Ferretti, M., Hendrikx, R. J. G., Romero Mesa, E., Southall, J., Cogdell, R. J., Novoderezhkin, V. I., Scholes, G. D. & van Grondelle, R., 2016, In : Scientific Reports. 6, 20834.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Spectroscopy
Energy transfer
Charge transfer
Gene Conversion
Dipole moment

Design principles of natural light-harvesting as revealed by single molecule spectroscopy

Kruger, T. P. J. & van Grondelle, R., 2016, In : Physica B. Condensed Matter. 480, p. 7-13

Research output: Contribution to JournalArticleAcademicpeer-review

Spectroscopy
Molecules
spectroscopy
molecules
Chromophores

Dynamic quenching in single photosystem II supercomplexes

Gruber, J. M., Xu, P., Chmeliov, J., Kruger, T. P. J., Alexandre, M. T. A., Valkunas, L., Croce, R. & van Grondelle, R., 2016, In : Physical Chemistry Chemical Physics - PCCP. 18, 37, p. 25852-25860

Research output: Contribution to JournalArticleAcademicpeer-review

Photosystem II Protein Complex
Quenching
Antennas
Fluorescence
Photosynthesis

Estimation of damped oscillation associated spectra from ultrafast transient absorption spectra

van Stokkum, I., Jumper, C. C., Snellenburg, J., Scholes, G. D., van Grondelle, R. & Malý, P., 2016, In : Journal of Chemical Physics. 145, 17, 174201.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Excited states
Absorption spectra
absorption spectra
oscillations
Chromophores
Chlamydomonas reinhardtii
Chlorophyta
Algae
Pigments
Light

From picoseconds to seconds: Fluorescence dynamics of single light-harvesting complexes

Gruber, J. M., 2016

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File
Fluorescence

Identification and characterization of multiple emissive species in aggregated minor antenna complexes

Wahadoszamen, M., Belgio, E., Rahman, M. A., Ara, A. M., Ruban, A. V. & van Grondelle, R., 1 Dec 2016, In : Biochimica et Biophysica Acta - Bioenergetics. 1857, 12, p. 1917-1924 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Light-harvesting Complexes (LHCs) Cluster Spontaneously in Membrane Environment Leading to Shortening of Their Excited State Lifetimes

Natali, A., Gruber, J. M., Dietzel, L., Stuart, M. C. A., van Grondelle, R. & Croce, R., 2016, In : Journal of Biological Chemistry. 291, 32, p. 16730-16739

Research output: Contribution to JournalArticleAcademicpeer-review

Excited states
Membranes
Light
Liposomes
Detergents

Mixing of exciton and charge-transfer states in light-harvesting complex Lhca4

Novoderezhkin, V. I., Croce, R., Wahadoszamen, M. D., Polukhina, I., Romero Mesa, E. & van Grondelle, R., 2016, In : Physical Chemistry Chemical Physics - PCCP. 18, 28, p. 19368-19377

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
charge transfer
excitons
chlorophylls
absorption spectra
fluorescence

Photophysics in single light-harvesting complexes II: from micelle to native nanodisks

Gruber, J. M., Scheidelaar, S., van Roon, H., Dekker, J. P., Kilian, J. A. & van Grondelle, R., 2016, Proc. of SPIE. p. 97140A

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Styrene
Micelles
Detergents
Fluorescence
Lipids

Renewables need a grand-challenge strategy

Bernstein, A., Sargent, E. H., Aspuru-Guzik, A., Cogdell, R., Fleming, G. R., van Grondelle, R. & Molina, M., 2016, In : Nature. 538, 7623, p. 30-30

Research output: Contribution to JournalArticleAcademicpeer-review

Resolving Energy and Electron Transfer Processes in Dyads With the Help of Global and Target Analysis

van Stokkum, I. H. M., Ravensbergen, J., Snellenburg, J. J., van Grondelle, R., Pillai, S., Moore, T. A., Gust, D., Moore, A. L. & Kennis, J. T. M., 2016, Artificial Photosynthesis. Bruno, R. (ed.). Amsterdam: Advances in Botanical Researc, Vol. 79. p. 169-192 (79).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Carotenoids
Fullerenes
Excited states
Energy transfer
Electrons

Resolving the contribution of the uncoupled phycobilisomes to cyanobacterial pulse-amplitude modulated (PAM) fluorometry signals

Acuña, A. M., Snellenburg, J. J., Gwizdala, M. S., Kirilovsky, D., van Grondelle, R. & van Stokkum, I. H. M., 2016, In : Photosynthesis Research. 127, 1, p. 91-102

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Fluorometry
fluorometry
autotrophs

Single Molecule Spectroscopy of Monomeric LHCII: Experiment and Theory

Malý, P., Gruber, J. M., van Grondelle, R. & Mancal, T., 2016, In : Scientific Reports. 6, 26230.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
chlorophylls
spectroscopy
molecules
fluorescence
statistical distributions