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  • Bas Kooijman
2019

Altricial-precocial spectra in animal kingdom

Augustine, S., Lika, K. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 27-34 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

A new phase in DEB research

Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 1-7 7 p.

Research output: Contribution to JournalEditorialAcademicpeer-review

Body size as emergent property of metabolism

Lika, K., Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 8-17 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Comparative physiological energetics of Mediterranean and North Atlantic loggerhead turtles

Marn, N., Jusup, M., Catteau, S., Kooijman, S. A. L. M. & Klanjšček, T., Jan 2019, In : Journal of sea research. 143, p. 100-118 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fitting multiple models to multiple data sets

Marques, G. M., Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 48-56 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Life in the slow lane? A dynamic energy budget model for the western swamp turtle, Pseudemydura umbrina

Arnall, S. G., Mitchell, N. J., Kuchling, G., Durell, B., Kooijman, S. A. L. M. & Kearney, M. R., Jan 2019, In : Journal of sea research. 143, p. 89-99 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Why big-bodied animal species cannot evolve a waste-to-hurry strategy

Augustine, S., Lika, K. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 18-26 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

2018

Biomass conversion at population level

Kooijman, S. A. L. M., 2018, Individual-Based Models and Approaches in Ecology: Populations, Communities and Ecosystems. CRC Press, p. 338-358 21 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

The AmP project: Comparing species on the basis of dynamic energy budget parameters

Marques, G. M., Augustine, S., Lika, K., Pecquerie, L., Domingos, T. & Kooijman, S. A. L. M., 9 May 2018, In : PLoS Computational Biology. 14, 5, e1006100.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2017

Comment on the ecophysiology of the Greenland shark, Somniosus microcephalus

Kooijman, S. A. L. M., 2017, In : Polar Biology. 40, 12, p. 2429-2533 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File

Environmental effects on growth, reproduction, and life-history traits of loggerhead turtles

Marn, N., Jusup, M., Legović, T., Kooijman, S. A. L. M. & Klanjšček, T., 24 Sep 2017, In : Ecological Modelling. 360, p. 163-178 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Homeostasis and the fuelling of metabolism; Comment on "Physics of metabolic organization" by Marko Jusup et al

Kooijman, S. A. L. M., 2017, In : Physics of Life Reviews. 20, p. 60-62 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File

Models in stress research

Kooijman, S. A. L. M., 2017, In : Ecological Complexity. 34, p. 161-177 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stofzaad, een bijzondere soort

Kooijman, S. A. L. M., 2017, In : Holland's Duinen. 69, p. 32-34

Research output: Contribution to JournalArticlePopular

Open Access
File

The role of bivalves in the Balgzand: First steps on an integrated modelling approach

Kooijman, S. A. L. M., 2017, In : Ecological Modelling. 359, p. 34-48 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
2015

A dynamic energy budget for the whole life-cycle of holometabolous insects.

Llandres, A. L., Marques, G. M., Maino, J. L., Kooijman, S. A. L. M., Kearney, M. R. & Casas, J., 2015, In : Ecological Monographs.

Research output: Contribution to JournalArticleAcademicpeer-review

Effects of chronic exposure to environmentally relevant concentrations of waterborne uranium an the digestive tract of zebrafish, Danio rerio.

Augustine, S., Pereira, S., Floriani, M., Camilleri, V., Kooijman, S. A. L. M., Gagnaire, B. & Adam-Guillermin, A., 2015, In : Journal of Environmental Radioactivity. 142, p. 45-53

Research output: Contribution to JournalArticleAcademicpeer-review

Sensitivity of animals to chemical compounds links to metabolic rate.

Baas, J. & Kooijman, S. A. L. M., 2015, In : Ecotoxicology. 24, p. 657-663

Research output: Contribution to JournalArticleAcademicpeer-review

2013

Erratum to: Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 67, p. 1019-1021

Research output: Contribution to JournalErratumAcademic

Waste to hurry: Dynamic energy budgets explain the need of wasting to fully exploit blooming resources.

Kooijman, S. A. L. M., 2013, In : Oikos. 122, p. 348-357

Research output: Contribution to JournalArticleAcademicpeer-review

Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 66, p. 795-805

Research output: Contribution to JournalArticleAcademicpeer-review

2012

Balancing nutrients, water and heat in the face of environmental change: a thermodynamic niche framework.

Kearney, M., Simpson, S., Raubenheimer, D. & Kooijman, S. A. L. M., 2012, In : Functional Ecology.

Research output: Contribution to JournalArticleAcademicpeer-review

Energy budgets.

Kooijman, S. A. L. M., 2012, Sourcebook in Theoretical Ecology. Hastings, A., Gross, L. & eds. (eds.). California: University of California Press

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Growth and reproduction simulation of candidate shellfish species at fish cages in the southern mediterranean: Dynamic energy budget (DEB) modelling for integrated multi-trophic aquaculture.

Sará, G., Reid, G., Rinaldi, A., Palmeri, V., Troell, M. & Kooijman, S. A. L. M., 2012, In : Aquaculture. 324-325, p. 259-266

Research output: Contribution to JournalArticleAcademicpeer-review

Juvenile food limitation in standard tests: a warning to ecotoxicologists.

Zimmer, E. I., Jager, T., Ducrot, V. & Kooijman, S. A. L. M., 2012, In : Ecotoxicology. 21, p. 2195-2205

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Latitudinal trends in habitat quality of shallow water flatfish nurseries.

Freitas, V., Kooijman, S. A. L. M. & Van der Veer, H. W., 2012, In : Marine Ecology Progress Series. 471, p. 203-214

Research output: Contribution to JournalArticleAcademicpeer-review

Reconstructing individual food and growth histories from calcified structures of acquatic organisms.

Pecquerie, L., Fablet, R., Petitgas, P., Alunno-Bruscia, M. & Kooijman, S. A. L. M., 2012, In : Marine Ecology Progress Series. 447, p. 151-164

Research output: Contribution to JournalArticleAcademicpeer-review

The trade-off between maturation and growth during accelerated development in frogs.

Mueller, C., Augustine, S., Kooijman, S. A. L. M., Kearney, M. R. & Seymore, R., 2012, In : Comparative Biochemistry and Physiology Part A. Molecular and Integrative Physiology. 163, p. 103-110

Research output: Contribution to JournalArticleAcademicpeer-review

Validating a DEB model for a blue mussel.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M., Witbaard, R., Philippart, C. J. M., Hippler, D. & Parker, R., 2012, In : Marine Ecology Progress Series. 463, p. 141-158

Research output: Contribution to JournalArticleAcademicpeer-review

2011

A full lifecycle bioenergetic model for bluefin tuna.

Jusup, M., Klanjscek, T., Matsuda, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. p. 6:e21903

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A manipulative test of competing theories for metabolic scaling in animals.

White, C. R., Kearney, M. R., Matthews, P. G. D., Kooijman, S. A. L. M. & Marshall, D. J., 2011, In : The American Naturalist. 178, p. 746-754

Research output: Contribution to JournalArticleAcademicpeer-review

Analyzing variations in life-history traits of Pacific salmon in the context of Dynamic Energy Budget (DEB) theory.

Pecquerie, L., Johnson, L. R., Kooijman, S. A. L. M. & Nisbet, R. M., 2011, In : Journal of sea research. 66, p. 424-433

Research output: Contribution to JournalArticleAcademicpeer-review

DEB parameter estimation for Mytilus edulis.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Journal of sea research. 66, p. 289-296

Research output: Contribution to JournalArticleAcademicpeer-review

Developmental energistics of zebrafish, Danio rerio.

Augustine, S., Gagnaire, B., Adam, C. & Kooijman, S. A. L. M., 2011, In : Comparative Biochemistry and Physiology Part A. Molecular and Integrative Physiology. 159, p. 275-283

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling feeding processes in bivalves in mechanistic aproach.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Ecological Modelling. 222, p. 514-523

Research output: Contribution to JournalArticleAcademicpeer-review

Scenarios for acceleration in fish development and the role of metamorphosid.

Kooijman, S. A. L. M., Pecquerie, L., Augustine, S. & Jusup, M., 2011, In : Journal of sea research. 66, p. 419-423

Research output: Contribution to JournalArticleAcademicpeer-review

Shedding light on fish otolith biomineralisation using a bioenergetic approach

Fablet, R., Pecquerie, L., Pontual, H. D., Hoie, H., Millner, R., Mosegaard, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. 6, 11, p. e27055

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stochastic feeding in fish larvae and their metabolic handling of starvation.

Augustine, S., Litvak, M. K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 411-418

Research output: Contribution to JournalArticleAcademicpeer-review

The AquaDEB project: Physiological flexibility of aquatic animals analysed with a generic dynamic energy budget model (phase II).

Alunno-Bruscia, M., v.d. Veer, H. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 263-269

Research output: Contribution to JournalArticleAcademicpeer-review

The comparative topology of energy allocation in budget models.

Lika, K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 381-391

Research output: Contribution to JournalArticleAcademicpeer-review

The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model I: Pilosophy and Approach.

Lika, K., Kearney, M. R. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 270-277

Research output: Contribution to JournalArticleAcademicpeer-review

The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model II: Popertis and Preliminary patterns.

Lika, K., Kearney, M. R. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 278-288

Research output: Contribution to JournalArticleAcademicpeer-review

2010

A biology-based approach for mixture toxicity of multiple endpoints over the life cycle.

Jager, T., Vandenbrouck, T., Baas, J., Coen, W. M. D. & Kooijman, S. A. L. M., 2010, In : Ecotoxicology. 19, p. 351-361

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A review of DEB-theory in assessing toxic effects of mixtures.

Baas, J., Jager, T. & Kooijman, S. A. L. M., 2010, In : Science of the Total Environment. 408, p. 3740-3739

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical contamination and the ecological quality of surface water.

Baas, J. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 1603-1607

Research output: Contribution to JournalArticleAcademicpeer-review

Dynamic Energy Budget theory for metabolic organisation.

Kooijman, S. A. L. M., 2010, Cambridge: Cambridge University Press. 514 p.

Research output: Book / ReportBookAcademicpeer-review

Formalised DEB theory restores coherence in core biology.

Sousa, T., Domingos, T., Poggiale, J. C. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3413-3428

Research output: Contribution to JournalArticleAcademicpeer-review