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  • Bas Kooijman
2010

A biology-based approach for mixture toxicity of multiple endpoints over the life cycle.

Jager, T., Vandenbrouck, T., Baas, J., Coen, W. M. D. & Kooijman, S. A. L. M., 2010, In : Ecotoxicology. 19, p. 351-361

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A review of DEB-theory in assessing toxic effects of mixtures.

Baas, J., Jager, T. & Kooijman, S. A. L. M., 2010, In : Science of the Total Environment. 408, p. 3740-3739

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical contamination and the ecological quality of surface water.

Baas, J. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 1603-1607

Research output: Contribution to JournalArticleAcademicpeer-review

Dynamic Energy Budget theory for metabolic organisation.

Kooijman, S. A. L. M., 2010, Cambridge: Cambridge University Press. 514 p.

Research output: Book / ReportBookAcademicpeer-review

Formalised DEB theory restores coherence in core biology.

Sousa, T., Domingos, T., Poggiale, J. C. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3413-3428

Research output: Contribution to JournalArticleAcademicpeer-review

How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton - zooplankton interactions.

Poggiale, J. C., Baklouti, M., Queguiner, B. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3495-3507

Research output: Contribution to JournalArticleAcademicpeer-review

Model-based experimental design for assessing effects of mixtures of chemicals

Baas, J., Stefanowicz, A. M., Klimek, B., Laskowski, R. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 115-120

Research output: Contribution to JournalArticleAcademicpeer-review

Stylized facts in microalgal growth-interpretation in a DEB context.

Lorena, A., Marques, G., Kooijman, S. A. L. M. & Sousa, T., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3509-3521

Research output: Contribution to JournalArticleAcademicpeer-review

Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories

Vinga, S., Neves, A. S., Santos, H., Brandt, B. W. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, 1557, p. 3429-3442

Research output: Contribution to JournalArticleAcademicpeer-review

Temperature tolerance and energetics, a dynamic energy budget-based comparison of north atlantic marine species.

Freitas, V., Cardisa, J. M. F., Lika, D., Peck, M., Campos, J., Kooijman, S. A. L. M. & van de Veer, H. W., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences.

Research output: Contribution to JournalArticle

The impact of metabolism on stabe isotope dynamics: a theoretical framework.

Pecquerie, L., Nisbet, R. M., Fablet, R., Lorrain, A. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3455-3468

Research output: Contribution to JournalArticleAcademicpeer-review

Understanding toxicity as processes in time.

Baas, J., Jager, T. & Kooijman, S. A. L. M., 2010, In : Science of the Total Environment. 408, p. 3735-3739

Research output: Contribution to JournalArticleAcademicpeer-review

2011

A full lifecycle bioenergetic model for bluefin tuna.

Jusup, M., Klanjscek, T., Matsuda, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. p. 6:e21903

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A manipulative test of competing theories for metabolic scaling in animals.

White, C. R., Kearney, M. R., Matthews, P. G. D., Kooijman, S. A. L. M. & Marshall, D. J., 2011, In : The American Naturalist. 178, p. 746-754

Research output: Contribution to JournalArticleAcademicpeer-review

Analyzing variations in life-history traits of Pacific salmon in the context of Dynamic Energy Budget (DEB) theory.

Pecquerie, L., Johnson, L. R., Kooijman, S. A. L. M. & Nisbet, R. M., 2011, In : Journal of sea research. 66, p. 424-433

Research output: Contribution to JournalArticleAcademicpeer-review

DEB parameter estimation for Mytilus edulis.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Journal of sea research. 66, p. 289-296

Research output: Contribution to JournalArticleAcademicpeer-review

Developmental energistics of zebrafish, Danio rerio.

Augustine, S., Gagnaire, B., Adam, C. & Kooijman, S. A. L. M., 2011, In : Comparative Biochemistry and Physiology Part A. Molecular and Integrative Physiology. 159, p. 275-283

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling feeding processes in bivalves in mechanistic aproach.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Ecological Modelling. 222, p. 514-523

Research output: Contribution to JournalArticleAcademicpeer-review

Scenarios for acceleration in fish development and the role of metamorphosid.

Kooijman, S. A. L. M., Pecquerie, L., Augustine, S. & Jusup, M., 2011, In : Journal of sea research. 66, p. 419-423

Research output: Contribution to JournalArticleAcademicpeer-review

Shedding light on fish otolith biomineralisation using a bioenergetic approach

Fablet, R., Pecquerie, L., Pontual, H. D., Hoie, H., Millner, R., Mosegaard, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. 6, 11, p. e27055

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stochastic feeding in fish larvae and their metabolic handling of starvation.

Augustine, S., Litvak, M. K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 411-418

Research output: Contribution to JournalArticleAcademicpeer-review

The AquaDEB project: Physiological flexibility of aquatic animals analysed with a generic dynamic energy budget model (phase II).

Alunno-Bruscia, M., v.d. Veer, H. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 263-269

Research output: Contribution to JournalArticleAcademicpeer-review

The comparative topology of energy allocation in budget models.

Lika, K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 381-391

Research output: Contribution to JournalArticleAcademicpeer-review

The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model I: Pilosophy and Approach.

Lika, K., Kearney, M. R. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 270-277

Research output: Contribution to JournalArticleAcademicpeer-review

The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model II: Popertis and Preliminary patterns.

Lika, K., Kearney, M. R. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 278-288

Research output: Contribution to JournalArticleAcademicpeer-review

2013

Erratum to: Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 67, p. 1019-1021

Research output: Contribution to JournalErratum

Waste to hurry: Dynamic energy budgets explain the need of wasting to fully exploit blooming resources.

Kooijman, S. A. L. M., 2013, In : Oikos. 122, p. 348-357

Research output: Contribution to JournalArticleAcademicpeer-review

Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 66, p. 795-805

Research output: Contribution to JournalArticleAcademicpeer-review

2014

35 years of DEB research

van der Meer, J., Klok, C., Kearney, M. R., Wijsman, J. W. M. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, November 2014, p. 1-4

Research output: Contribution to JournalArticleAcademicpeer-review

A new perspective on the growth pattern of the wandering albatross (Diomedea exulans) through deb theory.

Teixeira, C. M. G. L., Sousa, T., Marques, G. M., Domingos, T. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 117-127

Research output: Contribution to JournalArticleAcademicpeer-review

Bivalves: From individual to population modelling

Saraiva, S., van der Meer, J. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 71-83

Research output: Contribution to JournalArticleAcademicpeer-review

Comparative energetics of the 5 fish classes on the basis of dynamic energy budgets.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Journal of sea research. 94, p. 19-28

Research output: Contribution to JournalArticleAcademicpeer-review

Dynamic Energy Budget parameters of Brachidontes pharaonis, a lessepsian bivalve in the Mediterranean Sea.

Montalto, V., Palmeri, V., Rinaldi, A., Kooijman, S. A. L. M. & Sara, G., 2014, In : Journal of sea research. 94, p. 47-51

Research output: Contribution to JournalArticleAcademicpeer-review

Feeding and energetics of the great scallop, Pecten maximus, through a DEB model.

Lavaud, R., Flye-Sainte-Marie, J., Jean, F., Emmery, A., Strand, O. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 5-18

Research output: Contribution to JournalArticleAcademicpeer-review

Inference on energetics of deep-sea fish that cannot be aged: The case of the hagfish

van der Meer, J. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 138-143

Research output: Contribution to JournalArticleAcademicpeer-review

Mechanisms behind the metabolic flexibility of an invasive comb jelly.

Augustine, S., Jaspers, C., Kooijman, S. A. L. M., Carlotti, F., Poggiale, J. C., Freitas, V., v.d. Veer, H. & Walraven, L., 2014, In : Journal of sea research. 94, p. 156-165

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic acceleration in animal ontogeny: an evolutionary perspective.

Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 128-137

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic acceleration in mediterranean perciformes.

Lika, K., Kooijman, S. A. L. M. & Papandroulakis, N., 2014, In : Journal of sea research. 94, p. 37-46

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic acceleration in the pond snail Lymnaea stagnalis?

Zimmer, E. I., Ducrot, V., Jager, T., Koene, J. M., Lagadic, L. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 84-91

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling the eco-physiology of the purple mauve stinger, Pelagia noctiluca using Dynamic Energy Budget theory.

Augustine, S., Rosa, S., Kooijman, S. A. L. M., Carlotti, F. & Poggiale, J. C., 2014, In : Journal of sea research. 94, p. 52-64

Research output: Contribution to JournalArticleAcademicpeer-review

Reconciling theories for metabolic scaling.

Maino, J., Kearney, M., Nisbet, R. M. & Kooijman, S. A. L. M., 2014, In : Journal of Animal Ecology. 83, p. 20-29

Research output: Contribution to JournalArticleAcademicpeer-review

Resource allocation to reproduction in animals.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Biological Reviews. 89, p. 849-859

Research output: Contribution to JournalArticleAcademicpeer-review

The bijection from data to parameter space with the standard deb model quantifies the supply-demand spectrum.

Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., 2014, In : Journal of Theoretical Biology. 354, p. 35-47

Research output: Contribution to JournalArticleAcademicpeer-review

2015

A dynamic energy budget for the whole life-cycle of holometabolous insects.

Llandres, A. L., Marques, G. M., Maino, J. L., Kooijman, S. A. L. M., Kearney, M. R. & Casas, J., 2015, In : Ecological Monographs.

Research output: Contribution to JournalArticleAcademicpeer-review

Effects of chronic exposure to environmentally relevant concentrations of waterborne uranium an the digestive tract of zebrafish, Danio rerio.

Augustine, S., Pereira, S., Floriani, M., Camilleri, V., Kooijman, S. A. L. M., Gagnaire, B. & Adam-Guillermin, A., 2015, In : Journal of Environmental Radioactivity. 142, p. 45-53

Research output: Contribution to JournalArticleAcademicpeer-review

Sensitivity of animals to chemical compounds links to metabolic rate.

Baas, J. & Kooijman, S. A. L. M., 2015, In : Ecotoxicology. 24, p. 657-663

Research output: Contribution to JournalArticleAcademicpeer-review

2017

Comment on the ecophysiology of the Greenland shark, Somniosus microcephalus

Kooijman, S. A. L. M., 2017, In : Polar Biology. 40, 12, p. 2429-2533 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File

Environmental effects on growth, reproduction, and life-history traits of loggerhead turtles

Marn, N., Jusup, M., Legović, T., Kooijman, S. A. L. M. & Klanjšček, T., 24 Sep 2017, In : Ecological Modelling. 360, p. 163-178 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review