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  • Bas Kooijman
Article

35 years of DEB research

van der Meer, J., Klok, C., Kearney, M. R., Wijsman, J. W. M. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, November 2014, p. 1-4

Research output: Contribution to JournalArticleAcademicpeer-review

A biology-based approach for mixture toxicity of multiple endpoints over the life cycle.

Jager, T., Vandenbrouck, T., Baas, J., Coen, W. M. D. & Kooijman, S. A. L. M., 2010, In : Ecotoxicology. 19, p. 351-361

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A dynamic energy budget for the whole life-cycle of holometabolous insects.

Llandres, A. L., Marques, G. M., Maino, J. L., Kooijman, S. A. L. M., Kearney, M. R. & Casas, J., 2015, In : Ecological Monographs.

Research output: Contribution to JournalArticleAcademicpeer-review

A full lifecycle bioenergetic model for bluefin tuna.

Jusup, M., Klanjscek, T., Matsuda, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. p. 6:e21903

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Altricial-precocial spectra in animal kingdom

Augustine, S., Lika, K. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 27-34 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

A manipulative test of competing theories for metabolic scaling in animals.

White, C. R., Kearney, M. R., Matthews, P. G. D., Kooijman, S. A. L. M. & Marshall, D. J., 2011, In : The American Naturalist. 178, p. 746-754

Research output: Contribution to JournalArticleAcademicpeer-review

Analyzing variations in life-history traits of Pacific salmon in the context of Dynamic Energy Budget (DEB) theory.

Pecquerie, L., Johnson, L. R., Kooijman, S. A. L. M. & Nisbet, R. M., 2011, In : Journal of sea research. 66, p. 424-433

Research output: Contribution to JournalArticleAcademicpeer-review

A new perspective on the growth pattern of the wandering albatross (Diomedea exulans) through deb theory.

Teixeira, C. M. G. L., Sousa, T., Marques, G. M., Domingos, T. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 117-127

Research output: Contribution to JournalArticleAcademicpeer-review

A review of DEB-theory in assessing toxic effects of mixtures.

Baas, J., Jager, T. & Kooijman, S. A. L. M., 2010, In : Science of the Total Environment. 408, p. 3740-3739

Research output: Contribution to JournalArticleAcademicpeer-review

Bivalves: From individual to population modelling

Saraiva, S., van der Meer, J. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 71-83

Research output: Contribution to JournalArticleAcademicpeer-review

Body size as emergent property of metabolism

Lika, K., Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 8-17 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical contamination and the ecological quality of surface water.

Baas, J. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 1603-1607

Research output: Contribution to JournalArticleAcademicpeer-review

Comment on the ecophysiology of the Greenland shark, Somniosus microcephalus

Kooijman, S. A. L. M., 2017, In : Polar Biology. 40, 12, p. 2429-2533 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Comparative energetics of the 5 fish classes on the basis of dynamic energy budgets.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Journal of sea research. 94, p. 19-28

Research output: Contribution to JournalArticleAcademicpeer-review

Comparative physiological energetics of Mediterranean and North Atlantic loggerhead turtles

Marn, N., Jusup, M., Catteau, S., Kooijman, S. A. L. M. & Klanjšček, T., Jan 2019, In : Journal of sea research. 143, p. 100-118 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

DEB parameter estimation for Mytilus edulis.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Journal of sea research. 66, p. 289-296

Research output: Contribution to JournalArticleAcademicpeer-review

Developmental energistics of zebrafish, Danio rerio.

Augustine, S., Gagnaire, B., Adam, C. & Kooijman, S. A. L. M., 2011, In : Comparative Biochemistry and Physiology Part A. Molecular and Integrative Physiology. 159, p. 275-283

Research output: Contribution to JournalArticleAcademicpeer-review

Dynamic Energy Budget parameters of Brachidontes pharaonis, a lessepsian bivalve in the Mediterranean Sea.

Montalto, V., Palmeri, V., Rinaldi, A., Kooijman, S. A. L. M. & Sara, G., 2014, In : Journal of sea research. 94, p. 47-51

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Effects of chronic exposure to environmentally relevant concentrations of waterborne uranium an the digestive tract of zebrafish, Danio rerio.

Augustine, S., Pereira, S., Floriani, M., Camilleri, V., Kooijman, S. A. L. M., Gagnaire, B. & Adam-Guillermin, A., 2015, In : Journal of Environmental Radioactivity. 142, p. 45-53

Research output: Contribution to JournalArticleAcademicpeer-review

Environmental effects on growth, reproduction, and life-history traits of loggerhead turtles

Marn, N., Jusup, M., Legović, T., Kooijman, S. A. L. M. & Klanjšček, T., 24 Sep 2017, In : Ecological Modelling. 360, p. 163-178 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Feeding and energetics of the great scallop, Pecten maximus, through a DEB model.

Lavaud, R., Flye-Sainte-Marie, J., Jean, F., Emmery, A., Strand, O. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 5-18

Research output: Contribution to JournalArticleAcademicpeer-review

Fitting multiple models to multiple data sets

Marques, G. M., Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 48-56 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Formalised DEB theory restores coherence in core biology.

Sousa, T., Domingos, T., Poggiale, J. C. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3413-3428

Research output: Contribution to JournalArticleAcademicpeer-review

Homeostasis and the fuelling of metabolism; Comment on "Physics of metabolic organization" by Marko Jusup et al

Kooijman, S. A. L. M., 2017, In : Physics of Life Reviews. 20, p. 60-62 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton - zooplankton interactions.

Poggiale, J. C., Baklouti, M., Queguiner, B. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3495-3507

Research output: Contribution to JournalArticleAcademicpeer-review

Inference on energetics of deep-sea fish that cannot be aged: The case of the hagfish

van der Meer, J. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 138-143

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Life in the slow lane? A dynamic energy budget model for the western swamp turtle, Pseudemydura umbrina

Arnall, S. G., Mitchell, N. J., Kuchling, G., Durell, B., Kooijman, S. A. L. M. & Kearney, M. R., Jan 2019, In : Journal of sea research. 143, p. 89-99 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Mechanisms behind the metabolic flexibility of an invasive comb jelly.

Augustine, S., Jaspers, C., Kooijman, S. A. L. M., Carlotti, F., Poggiale, J. C., Freitas, V., v.d. Veer, H. & Walraven, L., 2014, In : Journal of sea research. 94, p. 156-165

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic acceleration in animal ontogeny: an evolutionary perspective.

Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 128-137

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic acceleration in mediterranean perciformes.

Lika, K., Kooijman, S. A. L. M. & Papandroulakis, N., 2014, In : Journal of sea research. 94, p. 37-46

Research output: Contribution to JournalArticleAcademicpeer-review

Metabolic acceleration in the pond snail Lymnaea stagnalis?

Zimmer, E. I., Ducrot, V., Jager, T., Koene, J. M., Lagadic, L. & Kooijman, S. A. L. M., 2014, In : Journal of sea research. 94, p. 84-91

Research output: Contribution to JournalArticleAcademicpeer-review

Model-based experimental design for assessing effects of mixtures of chemicals

Baas, J., Stefanowicz, A. M., Klimek, B., Laskowski, R. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 115-120

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling feeding processes in bivalves in mechanistic aproach.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Ecological Modelling. 222, p. 514-523

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling the eco-physiology of the purple mauve stinger, Pelagia noctiluca using Dynamic Energy Budget theory.

Augustine, S., Rosa, S., Kooijman, S. A. L. M., Carlotti, F. & Poggiale, J. C., 2014, In : Journal of sea research. 94, p. 52-64

Research output: Contribution to JournalArticleAcademicpeer-review

Models in stress research

Kooijman, S. A. L. M., 2017, In : Ecological Complexity. 34, p. 161-177 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Reconciling theories for metabolic scaling.

Maino, J., Kearney, M., Nisbet, R. M. & Kooijman, S. A. L. M., 2014, In : Journal of Animal Ecology. 83, p. 20-29

Research output: Contribution to JournalArticleAcademicpeer-review

Resource allocation to reproduction in animals.

Kooijman, S. A. L. M. & Lika, K., 2014, In : Biological Reviews. 89, p. 849-859

Research output: Contribution to JournalArticleAcademicpeer-review

Scenarios for acceleration in fish development and the role of metamorphosid.

Kooijman, S. A. L. M., Pecquerie, L., Augustine, S. & Jusup, M., 2011, In : Journal of sea research. 66, p. 419-423

Research output: Contribution to JournalArticleAcademicpeer-review

Sensitivity of animals to chemical compounds links to metabolic rate.

Baas, J. & Kooijman, S. A. L. M., 2015, In : Ecotoxicology. 24, p. 657-663

Research output: Contribution to JournalArticleAcademicpeer-review

Shedding light on fish otolith biomineralisation using a bioenergetic approach

Fablet, R., Pecquerie, L., Pontual, H. D., Hoie, H., Millner, R., Mosegaard, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. 6, 11, p. e27055

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stochastic feeding in fish larvae and their metabolic handling of starvation.

Augustine, S., Litvak, M. K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 411-418

Research output: Contribution to JournalArticleAcademicpeer-review

Stofzaad, een bijzondere soort

Kooijman, S. A. L. M., 2017, In : Holland's Duinen. 69, p. 32-34

Research output: Contribution to JournalArticlePopular

Open Access
File

Stylized facts in microalgal growth-interpretation in a DEB context.

Lorena, A., Marques, G., Kooijman, S. A. L. M. & Sousa, T., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3509-3521

Research output: Contribution to JournalArticleAcademicpeer-review

Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories

Vinga, S., Neves, A. S., Santos, H., Brandt, B. W. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, 1557, p. 3429-3442

Research output: Contribution to JournalArticleAcademicpeer-review

Temperature tolerance and energetics, a dynamic energy budget-based comparison of north atlantic marine species.

Freitas, V., Cardisa, J. M. F., Lika, D., Peck, M., Campos, J., Kooijman, S. A. L. M. & van de Veer, H. W., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences.

Research output: Contribution to JournalArticleAcademicpeer-review

The AmP project: Comparing species on the basis of dynamic energy budget parameters

Marques, G. M., Augustine, S., Lika, K., Pecquerie, L., Domingos, T. & Kooijman, S. A. L. M., 9 May 2018, In : PLoS Computational Biology. 14, 5, e1006100.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

The AquaDEB project: Physiological flexibility of aquatic animals analysed with a generic dynamic energy budget model (phase II).

Alunno-Bruscia, M., v.d. Veer, H. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 263-269

Research output: Contribution to JournalArticleAcademicpeer-review

The bijection from data to parameter space with the standard deb model quantifies the supply-demand spectrum.

Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., 2014, In : Journal of Theoretical Biology. 354, p. 35-47

Research output: Contribution to JournalArticleAcademicpeer-review