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  • Bas Kooijman
2019

Altricial-precocial spectra in animal kingdom

Augustine, S., Lika, K. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 27-34 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

A new phase in DEB research

Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 1-7 7 p.

Research output: Contribution to JournalEditorialAcademicpeer-review

Body size as emergent property of metabolism

Lika, K., Augustine, S. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 8-17 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Comparative physiological energetics of Mediterranean and North Atlantic loggerhead turtles

Marn, N., Jusup, M., Catteau, S., Kooijman, S. A. L. M. & Klanjšček, T., Jan 2019, In : Journal of sea research. 143, p. 100-118 19 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Fitting multiple models to multiple data sets

Marques, G. M., Lika, K., Augustine, S., Pecquerie, L. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 48-56 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Life in the slow lane? A dynamic energy budget model for the western swamp turtle, Pseudemydura umbrina

Arnall, S. G., Mitchell, N. J., Kuchling, G., Durell, B., Kooijman, S. A. L. M. & Kearney, M. R., Jan 2019, In : Journal of sea research. 143, p. 89-99 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Why big-bodied animal species cannot evolve a waste-to-hurry strategy

Augustine, S., Lika, K. & Kooijman, S. A. L. M., Jan 2019, In : Journal of sea research. 143, p. 18-26 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

2018

Biomass conversion at population level

Kooijman, S. A. L. M., 2018, Individual-Based Models and Approaches in Ecology: Populations, Communities and Ecosystems. CRC Press, p. 338-358 21 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

The AmP project: Comparing species on the basis of dynamic energy budget parameters

Marques, G. M., Augustine, S., Lika, K., Pecquerie, L., Domingos, T. & Kooijman, S. A. L. M., 9 May 2018, In : PLoS Computational Biology. 14, 5, e1006100.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2017

Comment on the ecophysiology of the Greenland shark, Somniosus microcephalus

Kooijman, S. A. L. M., 2017, In : Polar Biology. 40, 12, p. 2429-2533 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File

Environmental effects on growth, reproduction, and life-history traits of loggerhead turtles

Marn, N., Jusup, M., Legović, T., Kooijman, S. A. L. M. & Klanjšček, T., 24 Sep 2017, In : Ecological Modelling. 360, p. 163-178 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Homeostasis and the fuelling of metabolism; Comment on "Physics of metabolic organization" by Marko Jusup et al

Kooijman, S. A. L. M., 2017, In : Physics of Life Reviews. 20, p. 60-62 3 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Open Access
File

Models in stress research

Kooijman, S. A. L. M., 2017, In : Ecological Complexity. 34, p. 161-177 17 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stofzaad, een bijzondere soort

Kooijman, S. A. L. M., 2017, In : Holland's Duinen. 69, p. 32-34

Research output: Contribution to JournalArticlePopular

Open Access
File

The role of bivalves in the Balgzand: First steps on an integrated modelling approach

Kooijman, S. A. L. M., 2017, In : Ecological Modelling. 359, p. 34-48 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
2013

Erratum to: Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 67, p. 1019-1021

Research output: Contribution to JournalErratumAcademic

Waste to hurry: Dynamic energy budgets explain the need of wasting to fully exploit blooming resources.

Kooijman, S. A. L. M., 2013, In : Oikos. 122, p. 348-357

Research output: Contribution to JournalArticleAcademicpeer-review

Yolky eggs prepare for metabolic acceleration.

Kooijman, S. A. L. M., 2013, In : Journal of Mathematical Biology. 66, p. 795-805

Research output: Contribution to JournalArticleAcademicpeer-review

2011

A full lifecycle bioenergetic model for bluefin tuna.

Jusup, M., Klanjscek, T., Matsuda, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. p. 6:e21903

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A manipulative test of competing theories for metabolic scaling in animals.

White, C. R., Kearney, M. R., Matthews, P. G. D., Kooijman, S. A. L. M. & Marshall, D. J., 2011, In : The American Naturalist. 178, p. 746-754

Research output: Contribution to JournalArticleAcademicpeer-review

Analyzing variations in life-history traits of Pacific salmon in the context of Dynamic Energy Budget (DEB) theory.

Pecquerie, L., Johnson, L. R., Kooijman, S. A. L. M. & Nisbet, R. M., 2011, In : Journal of sea research. 66, p. 424-433

Research output: Contribution to JournalArticleAcademicpeer-review

DEB parameter estimation for Mytilus edulis.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Journal of sea research. 66, p. 289-296

Research output: Contribution to JournalArticleAcademicpeer-review

Developmental energistics of zebrafish, Danio rerio.

Augustine, S., Gagnaire, B., Adam, C. & Kooijman, S. A. L. M., 2011, In : Comparative Biochemistry and Physiology Part A. Molecular and Integrative Physiology. 159, p. 275-283

Research output: Contribution to JournalArticleAcademicpeer-review

Modelling feeding processes in bivalves in mechanistic aproach.

Saraiva, S., van der Meer, J., Kooijman, S. A. L. M. & Sousa, T., 2011, In : Ecological Modelling. 222, p. 514-523

Research output: Contribution to JournalArticleAcademicpeer-review

Scenarios for acceleration in fish development and the role of metamorphosid.

Kooijman, S. A. L. M., Pecquerie, L., Augustine, S. & Jusup, M., 2011, In : Journal of sea research. 66, p. 419-423

Research output: Contribution to JournalArticleAcademicpeer-review

Shedding light on fish otolith biomineralisation using a bioenergetic approach

Fablet, R., Pecquerie, L., Pontual, H. D., Hoie, H., Millner, R., Mosegaard, H. & Kooijman, S. A. L. M., 2011, In : PLoS ONE. 6, 11, p. e27055

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Stochastic feeding in fish larvae and their metabolic handling of starvation.

Augustine, S., Litvak, M. K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 411-418

Research output: Contribution to JournalArticleAcademicpeer-review

The AquaDEB project: Physiological flexibility of aquatic animals analysed with a generic dynamic energy budget model (phase II).

Alunno-Bruscia, M., v.d. Veer, H. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 263-269

Research output: Contribution to JournalArticleAcademicpeer-review

The comparative topology of energy allocation in budget models.

Lika, K. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 381-391

Research output: Contribution to JournalArticleAcademicpeer-review

The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model I: Pilosophy and Approach.

Lika, K., Kearney, M. R. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 270-277

Research output: Contribution to JournalArticleAcademicpeer-review

The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model II: Popertis and Preliminary patterns.

Lika, K., Kearney, M. R. & Kooijman, S. A. L. M., 2011, In : Journal of sea research. 66, p. 278-288

Research output: Contribution to JournalArticleAcademicpeer-review

2010

A biology-based approach for mixture toxicity of multiple endpoints over the life cycle.

Jager, T., Vandenbrouck, T., Baas, J., Coen, W. M. D. & Kooijman, S. A. L. M., 2010, In : Ecotoxicology. 19, p. 351-361

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

A review of DEB-theory in assessing toxic effects of mixtures.

Baas, J., Jager, T. & Kooijman, S. A. L. M., 2010, In : Science of the Total Environment. 408, p. 3740-3739

Research output: Contribution to JournalArticleAcademicpeer-review

Chemical contamination and the ecological quality of surface water.

Baas, J. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 1603-1607

Research output: Contribution to JournalArticleAcademicpeer-review

Dynamic Energy Budget theory for metabolic organisation.

Kooijman, S. A. L. M., 2010, Cambridge: Cambridge University Press. 514 p.

Research output: Book / ReportBookAcademicpeer-review

Formalised DEB theory restores coherence in core biology.

Sousa, T., Domingos, T., Poggiale, J. C. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3413-3428

Research output: Contribution to JournalArticleAcademicpeer-review

How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton - zooplankton interactions.

Poggiale, J. C., Baklouti, M., Queguiner, B. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3495-3507

Research output: Contribution to JournalArticleAcademicpeer-review

Model-based experimental design for assessing effects of mixtures of chemicals

Baas, J., Stefanowicz, A. M., Klimek, B., Laskowski, R. & Kooijman, S. A. L. M., 2010, In : Environmental Pollution. 158, p. 115-120

Research output: Contribution to JournalArticleAcademicpeer-review

Stylized facts in microalgal growth-interpretation in a DEB context.

Lorena, A., Marques, G., Kooijman, S. A. L. M. & Sousa, T., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3509-3521

Research output: Contribution to JournalArticleAcademicpeer-review

Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories

Vinga, S., Neves, A. S., Santos, H., Brandt, B. W. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, 1557, p. 3429-3442

Research output: Contribution to JournalArticleAcademicpeer-review

Temperature tolerance and energetics, a dynamic energy budget-based comparison of north atlantic marine species.

Freitas, V., Cardisa, J. M. F., Lika, D., Peck, M., Campos, J., Kooijman, S. A. L. M. & van de Veer, H. W., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences.

Research output: Contribution to JournalArticleAcademicpeer-review

The impact of metabolism on stabe isotope dynamics: a theoretical framework.

Pecquerie, L., Nisbet, R. M., Fablet, R., Lorrain, A. & Kooijman, S. A. L. M., 2010, In : Philosophical Transactions of the Royal Society B. Biological Sciences. 365, p. 3455-3468

Research output: Contribution to JournalArticleAcademicpeer-review

Understanding toxicity as processes in time.

Baas, J., Jager, T. & Kooijman, S. A. L. M., 2010, In : Science of the Total Environment. 408, p. 3735-3739

Research output: Contribution to JournalArticleAcademicpeer-review