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• Article

  A comparison of rpoB and 16S rRNA as Markers in Pyrosequencing Studies of Bacterial Diversity.

  Vos, M., Quince, C., Pijl, A. S., de Hollander, M. & Kowalchuk, G. A., 2012, In : PLoS ONE. 7, 2, e30600.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • marker
  • comparison
  • gene
  • protein
  • population genetics
  152 Downloads (Pure)

• Bacterial and fungal communities associated with Tuber magnatum productive niches.

  Mello, A., Miozzibc, L., Vizzinib, A., Napolib, C., Kowalchuk, G. A. & Bonfante, P., 2010, In : Plant Biosystems. 144, p. 323-332

  Research output: Contribution to Journal › Article › Academic › peer-review

• Bad News for Soil Carbon Sequestration?

  Kowalchuk, G. A., 2012, In : Science. 337, 6098, p. 1049-1050

  Research output: Contribution to Journal › Article › Academic › peer-review

  • soil carbon
  • carbon sequestration
  • fungus
  • carbon dioxide
  • organic carbon

• Community assembly, species richness and nestedness of arbuscular myucorrhizal fungi in agricultural soils.

  Verbruggen, E., van der Heijden, M. G. A., Weedon, J. T., Kowalchuk, G. A. & Roling, W. F. M., 2012, In : Molecular Ecology. 21, p. 2341-2353

  Research output: Contribution to Journal › Article › Academic › peer-review

  • nestedness
  • agricultural soils
  • Soil
  • agricultural soil
  • mycorrhizal fungi

• Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on Acidobacteria subdivision 6.

  Kielak, A. M., van Veen, J. A. & Kowalchuk, G. A., 2010, In : Applied and Environmental Microbiology. 76, p. 6769-6777

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Acidobacteria
  • Metagenomics
  • genomics
  • library
  • Soil
  166 Downloads (Pure)

• Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities.

  Epelde, L., Becerril, J. M., Kowalchuk, G. A., Deng, Y., Zhou, J. & Garbisu, C., 2010, In : Applied and Environmental Microbiology. 76, p. 7843-7853

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  File

  • Thlaspi
  • Noccaea caerulescens
  • Soil
  • Microbiota
  • microbial communities
  200 Downloads (Pure)

• Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils.

  Yergeau, E., Bezemer, T. M., Hedlund, K., Mortimer, S. R., Kowalchuk, G. A. & van der Putten, W. H., 2010, In : Environmental Microbiology. 12, 8, p. 2096-2106

  Research output: Contribution to Journal › Article › Academic › peer-review

  • chalk soils
  • chalk grasslands
  • calcareous grassland
  • Grassland
  • grassland soils

• Links between pseudomethallophytes and rhizosphere microbial communities in a metalliferous soil.

  Epelde, L., Becerril, J. M., Blanco, F., Kowalchuk, G. A. & Garbisu, C., 2012, In : Pedobiologia. 55, 4, p. 219-225

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Noccaea caerulescens
  • Rumex acetosa
  • rhizosphere
  • microbial communities
  • microbial community

• Microbial secondary succession in a chronosequence of chalk grasslands.

  Kuramae, E. E., Gamper, H. A., Yergeau, E., Piceno, Y. M., Brodie, E. L., DeSantis, T. Z., Andersen, G. L., Veen, J. A. & Kowalchuk, G. A., 2010, In : ISME Journal. 4, p. 711-715

  Research output: Contribution to Journal › Article › Academic › peer-review

  • chalk grasslands
  • calcareous grassland
  • Grassland
  • secondary succession
  • chronosequences

• Molecular trait indicators: moving beyond phylogeny in arbuscular mycorrhizal ecology.

  Gamper, H. A., van der Heijden, M. G. A. & Kowalchuk, G. A., 2010, In : New Phytologist. 185, p. 67-82

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Phylogeny
  • Ecology
  • Ecosystem
  • ecosystems
  • ecology

• No effects of experimental warming but contrasting seasonal patterns for soil peptidase and glycosidase enzymes in a sub-arctic peat bog

  Weedon, J. T., Aerts, R., Kowalchuk, G. A. & van Bodegom, P. M., 2014, In : Biogeochemistry. 117, p. 55-66

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Peat
  • Glycoside Hydrolases
  • peatland
  • Peptide Hydrolases
  • enzyme

• Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil.

  Kielak, A., Rodrigues, J. M. L., Kuramae, E. E., Chain, P. S. G., van Veen, J. A. & Kowalchuk, G. A., 2010, In : FEMS Microbiology Ecology. 71, p. 23-33

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Verrucomicrobia
  • Grassland
  • grassland soil
  • Metagenomics
  • Soil

• Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils.

  Verbruggen, E., Roling, W. F. M., Gamper, H. A., Kowalchuk, G. A., Verhoef, H. A. & van der Heijden, M. G. A., 2010, In : New Phytologist. 186, p. 968-979

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Organic Agriculture
  • Mycobiome
  • fungal communities
  • agricultural soils
  • Soil

• Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.

  Drigo, B., van Veen, J. A., Pijl, A. S., Kielak, A. M., Gamper, H. A., Houtekamer, M. J., Bodelier, P. L. E., Boschker, H. T. S., Whiteley, A. S. & Kowalchuk, G. A., 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 24, p. 10938-10942

  Research output: Contribution to Journal › Article › Academic › peer-review

  • microbial community
  • carbon

• Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

  Yergeau, E., Bokhorst, S. F., Kang, S., Jizhong, Z., Greer, C. W., Aerts, R. & Kowalchuk, G. A., 2012, In : ISME Journal. 6, 3, p. 692-702

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Antarctic Regions
  • soil microorganism
  • soil microorganisms
  • Soil
  • warming

• Soil-Borne Microbial Functional Structure across Different Land Uses

  Kuramae, E. E., Zhou, J. Z., Kowalchuk, G. A. & van Veen, J. A., 2014, In : The Scientific World Journal. 2014, 8 p., 216071.

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Land use
  • Soil
  • Genes
  • Soils
  • gene

• Soil characteristics more strongly influence soil bacterial communities than land-use type.

  Kuramae, E. E., Yergeau, E., Wong, L. C., Pijl, A. S., van Veen, J. A. & Kowalchuk, G. A., 2012, In : FEMS Microbiology Ecology. 79, 1, p. 12-24

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Soil
  • forest soil
  • Forests
  • land use
  • pine

• Summer warming accelerates sub-arctic peatland nitrogen cycling without changing enzyme pools or microbial community structure.

  Weedon, J. T., Kowalchuk, G. A., Aerts, R., van Hal, J., van Logtestijn, R. S. P., Tas, N., Roling, W. F. M. & van Bodegom, P. M., 2012, In : Global Change Biology. 18, p. 138-150

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Climate change
  • peatland
  • Carbon Monoxide
  • Nitrogen
  • primary production

• Testing potential effects of Maize expressing the Bacillus thuringiensisCry1 Ab endotoxin (Bt Maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting.

  Verbruggen, E., Kuramae, E. E., Hillekens, R., de Hollander, M., Kiers, E. T., Roling, W. F. M., Kowalchuk, G. A. & van der Heijden, M. G. A., 2012, In : Applied and Environmental Microbiology. 78, p. 7384-7392

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Mycobiome
  • Zea mays
  • fungal communities
  • High-Throughput Nucleotide Sequencing
  • endotoxins

• The northward shifting neophyte Tragopogon dubius is just as effective in forming mycorrhizal associations as the native T. pratensis

  van Grunsven, R. H. A., Yuwati, T-W., Kowalchuk, G. A., van der Putten, W. H. & Veenendaal, E. M., 2014, In : Plant Ecology and Diversity. 7, p. 533-539

  Research output: Contribution to Journal › Article › Academic › peer-review

  • Tragopogon dubius
  • Tragopogon pratensis
  • natural enemy
  • invasiveness
  • vigor

• Unlocking the potential of metagenomics through replicated experimental design.

  Knight, R., Jansson, J., Field, D., Fierer, N., Desai, N., Fuhrman, J. A., Hugenholtz, P., van der Lelie, D., Meyer, F., Stevens, R., Bailey, M. J., Gordon, J. I., Kowalchuk, G. A. & Gilbert, J. A., 2012, In : Nature Biotechnology. 30, p. 513-520

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • Glycoside Hydrolases
  • Metagenomics
  • Biomarkers
  • Enzymes
  • DNA

• Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere.

  Remus-Emsermann, M. N. P., Tecon, R., Kowalchuk, G. A. & Leveau, J. H., 2012, In : The ISME Journal. 6, 4, p. 756-765

  Research output: Contribution to Journal › Article › Academic › peer-review

  Open Access

  • phyllosphere
  • Conservation of Natural Resources
  • carrying capacity
  • immigration
  • reproductive success