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  • M.L. Groot
2019

Bringing third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tissue

Van Huizen, L. M. G., Seinstra, D., Dickhoff, C., Radonic, T., Bahce, I., Van Mourik, F., Annema, J. T., Daniels, J. M. A., Van Boven, W. J. P. & Groot, M. L., 22 Jul 2019, Medical Laser Applications and Laser-Tissue Interactions IX. Lilge, L. D. & Philipp, C. M. (eds.). SPIE, 110790J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11079).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Bringing third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tissue

van Huizen, L. M. G., Seinstra, D., Dickhoff, C., Radonic, T., Bahce, I., van Mourik, F., Annema, J. T., Daniels, J. M. A., van Boven, W. J. P. & Groot, M. L., 1 Jan 2019, European Conference on Biomedical Optics, ECBO_2019: Conference proceedings. OSA - The Optical Society, 11079_18. (Optics InfoBase Conference Papers; vol. Part F142-ECBO 2019).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

Konold, P. E., Van Stokkum, I. H. M., Muzzopappa, F., Wilson, A., Groot, M. L., Kirilovsky, D. & Kennis, J. T. M., 9 Jan 2019, In : Journal of the American Chemical Society. 141, 1, p. 520-530 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Quantitative Third Harmonic Generation Microscopy for Assessment of Glioma in Human Brain Tissue

Zhang, Z., de Munck, J. C., Verburg, N., Rozemuller, A. J., Vreuls, W., Cakmak, P., van Huizen, L. M. G., Idema, S., Aronica, E., de Witt Hamer, P. C., Wesseling, P. & Groot, M. L., 5 Jun 2019, In : Advanced Science. 6, 11, 1900163.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Tensor regularized total variation for denoising of third harmonic generation images of brain tumors

Zhang, Z., Groot, M. L. & de Munck, J. C., 1 Jan 2019, In : Journal of biophotonics. 12, 1, p. 1-13 13 p., e201800129.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2018

Quantitative comparison of 3D third harmonic generation and fluorescence microscopy images

Zhang, Z., Kuzmin, N. V., Groot, M. L. & de Munck, J. C., Jan 2018, In : Journal of biophotonics. 11, 1, p. 1-13 13 p., e201600256.

Research output: Contribution to JournalArticleAcademicpeer-review

2017

Effectiveness of Autologous Fat Grafting in Adherent Scars: Results Obtained by a Comprehensive Scar Evaluation Protocol

Jaspers, M. E. H., Brouwer, K. M., van Trier, A. J. M., Groot, M. L., Middelkoop, E. & van Zuijlen, P. P. M., Jan 2017, In : Plastic and Reconstructive Surgery. 139, 1, p. 212-219 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Extracting morphologies from third harmonic generation images of structurally normal human brain tissue

Zhang, Z., Kuzmin, N. V., Groot, M. L. & de Munck, J. C., 1 Jun 2017, In : Bioinformatics. 33, 11, p. 1712-1720 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Photoactive Yellow Protein – Converting Light into a Metastable Structural Change: Biomolecules and Supramolecular Assemblies

Groot, M. L. & Hellingwerf, K. J., Jan 2017, Ultrafast Dynamics at the Nanoscale. Haacke, S. (ed.). Pan Stanford Publishing, p. 217-166

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Tensor regularized total variation for third harmonic generation brain images

Zhang, Z., Groot, M. L. & de Munck, J. C., 1 Jan 2017, EMBEC and NBC 2017 - Joint Conference of the European Medical and Biological Engineering Conference EMBEC 2017 and the Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2017. Eskola, H., Vaisanen, O., Viik, J. & Hyttinen, J. (eds.). Springer - Verlag, Vol. 65. p. 129-132 4 p.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2015

Short Hydrogen Bonds and Negative Charge in Photoactive Yellow Protein Promote Fast Isomerization but not High Quantum Yield

Zhu, J., Vreede, J., Hospes, M., Arents, J., Kennis, J. T. M., van Stokkum, I. H. M., Hellingwerf, K. J. & Groot, M. L., 2015, In : Journal of Physical Chemistry B. 119, 6, p. 2372-2383

Research output: Contribution to JournalArticleAcademicpeer-review

Ultrafast infrared spectroscopy in photosynthesis

di Donato, M. & Groot, M. L., 2015, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1847, 1, p. 2-11

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2013

Closed Reaction Centers of PS1 Still Can Perform the First Steps of Charge Separation. A Mid IR Pump Probe Study with fs Resolution

Stahl, A. D., Di Donato, M., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2013, Photosynthesis Research for Food, Fuel and the Future. Springer Berlin Heidelberg, p. 127-130

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Early Bacteriopheophytin Reduction in Charge Separation in Reaction Centers of Rhodobacter sphaeroides

Zhu, J., van Stokkum, I. H. M., Paparelli, L., Jones, M. R. & Groot, M. L., 2013, In : Biophysical Journal. 104, 11, p. 2493-2502

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Excitation Energy Trapping and Dissipation by Ni-Substituted Bacteriochlorophyll a in Reconstituted LH1 Complexes from Rhodospirillum rubrum

Lambrev, P. H., Miloslavina, Y., Stahl, A. D., Michalik, M., Susz, A., Tworzydlo, J., Fiedor, J., Huhn, G., Groot, M. L., van Grondelle, R., Garab, G. & Fiedor, L., 2013, In : Journal of Physical Chemistry B. 117, 38, p. 11260-11271

Research output: Contribution to JournalArticleAcademicpeer-review

Lower frequency region mid-infrared spectroscopy by chirped pulse upconversion

Zhu, J., Mathes, T., Stahl, A. D., Kennis, J. T. M. & Groot, M. L., 2013, XVIIIth International Conference on Ultrafast Phenomena. EDP Sciences, (09004).

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Photoionization and Electron Radical Recombination Dynamics in Photoactive Yellow Protein Investigated by Ultrafast Spectroscopy in the Visible and Near-Infrared Spectral Region

Zhu, J., Hospes, M., Arents, J., Kennis, J. T. M., van Stokkum, I. H. M., Hellingwerf, K. J. & Groot, M. L., 2013, In : Journal of Physical Chemistry B. 117, 38, p. 11042-11048

Research output: Contribution to JournalArticleAcademicpeer-review

Ultrafast geminate electron-radical recombination dynamics in photoactive yellow protein

Zhu, J., Paparelli, L., Arents, J., Hellingwerf, K. J., Kennis, J. T. M., van Stokkum, I. H. M. & Groot, M. L., 2013, XVIIIth International Conference on Ultrafast Phenomena. EDP Sciences, p. 07010

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

2012

Excited state dynamics and catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase

Scrutton, N. S., Groot, M. L. & Heyes, D. J., 2012, In : Physical Chemistry Chemical Physics - PCCP. 14, 25, p. 8818-8824

Research output: Contribution to JournalArticleAcademicpeer-review

Excited state proton transfer in strongly enhanced GFP (sGFP2)

van Oort, B. F., ter Veer, M. J. T., Groot, M. L. & van Stokkum, I. H. M., 2012, In : Physical Chemistry Chemical Physics - PCCP. 14, 25, p. 8852-8858

Research output: Contribution to JournalArticleAcademicpeer-review

Hydrogen Bond Switching among Flavin and Amino Acids Determines the Nature of Proton-Coupled Electron Transfer in BLUF Photoreceptors

Mathes, T., Zhu, J., van Stokkum, I. H. M., Groot, M. L., Hegemann, P. & Kennis, J. T. M., 2012, In : Journal of Physical Chemistry Letters. 3, 2, p. 203-208

Research output: Contribution to JournalArticleAcademicpeer-review

Role of PufX in Photochemical Charge Separation in the RC-LH1 Complex from Rhodobacter sphaeroides: An Ultrafast Mid-IR Pump-Probe Investigation

Stahl, A. D., Crouch, L. I., Jones, M. R., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2012, In : Journal of Physical Chemistry B. 116, 1, p. 434-444

Research output: Contribution to JournalArticleAcademicpeer-review

Short-Coherence Off-Axis Holographic Microscopy of Live Cell Dynamics

Witte, S., Plauska, A. & Groot, M. L., 2012, Digital Holography and Three-Dimensional Imaging, OSA Technical Digest. Optical Society of America, p. DW3C.4

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Short-coherence off-axis holographic phase microscopy of live cell dynamics

Witte, S., Plauska, A., Ridder, M. C., van Berge, L., Mansvelder, H. D. & Groot, M. L., 2012, In : Biomedical Optics Express. 3, 9, p. 2184-2189 5 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Spectroscopic characterization of the first ultrafast catalytic intermediate in protochlorophyllide oxidoreductase

Sytina, O., van Stokkum, I. H. M., Heyes, D. J., Hunter, C. N. & Groot, M. L., 2012, In : Physical Chemistry Chemical Physics - PCCP. 14, 2, p. 616-625

Research output: Contribution to JournalArticleAcademicpeer-review

Third-Harmonic Generation Microscopy For Label-Free Brain Imaging

Witte, S., Kuzmin, N. V., Negrean, A., Lodder, J. C., Testa-Silva, G., de Kock, C. P. J., Mansvelder, H. D. & Groot, M. L., 2012, Biomedical Optics, OSA Technical Digest. Optical Society of America, p. BSu4B.4

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Ultrafast mid-infrared spectroscopy by chirped pulse upconversion in 1800-1000cm(-1) region

Zhu, J., Mathes, T., Stahl, A. D., Kennis, J. T. M. & Groot, M. L., 2012, In : Optics Express. 20, 10, p. 10562-10571 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
2011

Cofactors Involved in Light-Driven Charge Separation in Photosystem I Identified by Subpicosecond Infrared Spectroscopy

Di Donato, M., Stahl, A. D., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2011, In : Biochemistry. 50, 4, p. 480-490

Research output: Contribution to JournalArticleAcademicpeer-review

Enzyme activation and catalysis: characterisation of the vibrational modes of substrate and product in protochlorophyllide oxidoreductase

Sytina, O., Alexandre, M. T., Heyes, D. J., Hunter, C. N., Robert, B., van Grondelle, R. & Groot, M. L., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 6, p. 2307 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Label-free live brain imaging and targeted patching with third-harmonic generation microscopy

Witte, S., Negrean, A., Lodder, J. C., de Kock, C. P. J., Testa-Silva, G., Mansvelder, H. D. & Groot, M. L., 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 15, p. 5970-5975

Research output: Contribution to JournalArticleAcademicpeer-review

Label-free live brain imaging with third-harmonic generation microscopy

Witte, S., Negrean, A., Lodder, J. C., de Kock, C. P. J., Testa-Silva, G., Mansvelder, H. D. & Groot, M. L., 2011, CLEO/Europe and EQEC 2011 Conference Digest. Optical Society of America

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademic

Modeling of Multi-Exciton Transient Absorption Spectra of Protochlorophyllide Aggregates in Aqueous Solution

Sytina, O., Novoderezhkin, V. I., van Grondelle, R. & Groot, M. L., 2011, In : Journal of Physical Chemistry A. 115, 43, p. 11944-11951

Research output: Contribution to JournalArticleAcademicpeer-review

On the involvement of Single-Bond Rotation in the Primary Photochemistry of Photoactive Yellow Protein

Stahl, A. D., Hospes, M., Singhal, K., van Stokkum, I. H. M., van Grondelle, R., Groot, M. L. & Hellingwerf, K. J., 2011, In : Biophysical Journal. 101, 5, p. 1184-1192

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File

Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy

Toh, K. C., Stojkovic, E. A., Rupenyan, A. B., van Stokkum, I. H. M., Salumbides, M., Groot, M. L., Moffat, K. & Kennis, J. T. M., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3778-3786 9 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Proline 68 Enhances Photoisomerization Yield in Photoactive Yellow Protein

Rupenyan, A. B., Vreede, J., van Stokkum, I. H. M., Hospes, M., Kennis, J. T. M., Hellingwerf, K. J. & Groot, M. L., 2011, In : Journal of Physical Chemistry B. 115, 20, p. 6668-6677 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Proton transfer events in GFP

Di Donato, M., van Wilderen, L. J. G. W., van Stokkum, I. H. M., Cohen Stuart, T. A., Kennis, J. T. M., Hellingwerf, K. J., van Grondelle, R. & Groot, M. L., 2011, In : Physical Chemistry Chemical Physics - PCCP. 13, 36, p. 16295-16305

Research output: Contribution to JournalArticleAcademicpeer-review

Single and multi-exciton dynamics in aqueous protochlorophyllide aggregates

Sytina, O., van Stokkum, I. H. M., van Grondelle, R. & Groot, M. L., 2011, In : Journal of Physical Chemistry A. 115, 16, p. 3936-3946 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review