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2020

A Unified Experimental/Theoretical Description of the Ultrafast Photophysics of Single and Double Thionated Uracils

Teles-Ferreira, D. C., Conti, I., Borrego-Varillas, R., Nenov, A., Van Stokkum, I. H. M., Ganzer, L., Manzoni, C., de Paula, A. M., Cerullo, G. & Garavelli, M., 2 Jan 2020, In : Chemistry - A European Journal. 26, 1, p. 336-343 8 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Uracil
Absorption spectroscopy
Excited states
Absorption spectra
Sulfur
2019

Capturing the Quenching Mechanism of Light-Harvesting Complexes of Plants by Zooming in on the Ensemble

Mascoli, V., Liguori, N., Xu, P., Roy, L. M., van Stokkum, I. H. M. & Croce, R., 14 Nov 2019, In : Chem. 5, 11, p. 2900-2912 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Quenching
Light
Lutein
Excitation energy
Energy Transfer

PH dependence, kinetics and light-harvesting regulation of nonphotochemical quenching in Chlamydomonas

Tian, L., Nawrocki, W. J., Liu, X., Polukhina, I., Van Stokkum, I. H. M. & Croce, R., 23 Apr 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8320-8325 6 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Chlamydomonas
Light
Bryophyta
Chlamydomonas reinhardtii
Diatoms

Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

Konold, P. E., Van Stokkum, I. H. M., Muzzopappa, F., Wilson, A., Groot, M. L., Kirilovsky, D. & Kennis, J. T. M., 9 Jan 2019, In : Journal of the American Chemical Society. 141, 1, p. 520-530 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Secondary Protein Structure
Carotenoids
Proteins
Structural dynamics
Hydrogen
2018

A functional compartmental model of the Synechocystis PCC 6803 phycobilisome

van Stokkum, I. H. M., Gwizdala, M., Tian, L., Snellenburg, J. J., van Grondelle, R., van Amerongen, H. & Berera, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 87-102 16 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Correction to: The phycobilisome terminal emitter transfers its energy with a rate of (20 ps)–1 to photosystem II

Acuña, A. M., van Alphen, P., van Grondelle, R. & van Stokkum, I. H. M., 28 Mar 2018, In : Photosynthetica. p. 1-1 1 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Photosystem II Protein Complex
Energy Transfer
energy transfer

Development of fluorescence quenching in Chlamydomonas reinhardtii upon prolonged illumination at 77 K

Wlodarczyk, L. M., Snellenburg, J. J., Dekker, J. P. & Stokkum, I. H. M., Sep 2018, In : Photosynthesis Research. 137, 3, p. 503-513 11 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Chlamydomonas reinhardtii
Photosystem II Protein Complex
Lighting
photosystem II
lighting

Energy transfer and trapping in Synechococcus WH 7803

Acuña, A. M., Lemaire, C., van Grondelle, R., Robert, B. & van Stokkum, I. H. M., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 115-124 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access

Excitation-Wavelength-Dependent Photocycle Initiation Dynamics Resolve Heterogeneity in the Photoactive Yellow Protein from Halorhodospira halophila

Mix, L. T., Carroll, E. C., Morozov, D., Pan, J., Gordon, W. R., Philip, A., Fuzell, J., Kumauchi, M., Van Stokkum, I., Groenhof, G., Hoff, W. D. & Larsen, D. S., 20 Mar 2018, In : Biochemistry. 57, 11, p. 1733-1747 15 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Wavelength
mannosulfan
Proteins
Fluorescence
Chromophores

Introduction: light harvesting for photosynthesis

Pandit, A., van Stokkum, I. H. M., van Amerongen, H. & Croce, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 1-2 2 p.

Research output: Contribution to JournalEditorialAcademicpeer-review

Open Access
File

Light Harvesting in Photosynthesis

Croce, R. (ed.), van Grondelle, R. (ed.), van Amerongen, H. (ed.) & van Stokkum, I. (ed.), Feb 2018, Boca Rata: CRC Press. 611 p.

Research output: Book / ReportBook editingAcademic

algae
photosynthesis
energy transfer
pigments
electron transfer
Open Access
File

Spectrally decomposed dark-to-light transitions in a PSI-deficient mutant of Synechocystis sp. PCC 6803

Acuña, A. M., van Alphen, P., Branco dos Santos, F., van Grondelle, R., Hellingwerf, K. J. & van Stokkum, I. H. M., Feb 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 2, p. 57-68 12 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Synechocystis
Fluorescence
Light
Phycobilisomes
Photosynthetic Reaction Center Complex Proteins

Spectrally decomposed dark-to-light transitions in Synechocystis sp. PCC 6803

Acuña, A. M., van Alphen, P., Branco Dos Santos, F., van Grondelle, R., Hellingwerf, K. J. & van Stokkum, I. H. M., 29 Mar 2018, In : Photosynthesis Research. p. 1-14 14 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Synechocystis sp. PCC 6803
Synechocystis
Energy Transfer
Energy transfer
Dark Adaptation

Systems biophysics: Global and target analysis of light harvesting and photochemical quenching in vivo

van Stokkum, I., Feb 2018, Light Harvesting in Photosynthesis . Croce, R., van Grondelle, R., van Amerongen, H. & van Stokkum, I. (eds.). CRC Press, Boca Rata, p. 467-482 16 p.

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Open Access
File
Biophysics
Quenching
Photosynthesis
Photosynthetic Reaction Center Complex Proteins
Energy transfer

The phycobilisome terminal emitter transfers its energy with a rate of (20 ps)–1 to photosystem II

Acuña, A. M., Van Alphen, P., Van Grondelle, R. & Van Stokkum, I. H. M., Mar 2018, In : Photosynthetica. 56, 1, p. 265-274 10 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Photosystem II Protein Complex
Energy Transfer
energy transfer

Vibronic Wavepackets and Energy Transfer in Cryptophyte Light-Harvesting Complexes

Jumper, C. C., Van Stokkum, I. H. M., Mirkovic, T. & Scholes, G. D., 21 Jun 2018, In : Journal of Physical Chemistry B. 122, 24, p. 6328-6340 13 p.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
File
Energy transfer
energy transfer
Phycobiliproteins
algae
Algae
2017

A four state parametric model for the kinetics of the non-photochemical quenching in Photosystem II

Snellenburg, J. J., Johnson, M. P., Ruban, A. V., van Grondelle, R. & van Stokkum, I. H. M., Oct 2017, In : Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1858, 10, p. 854-864

Research output: Contribution to JournalArticleAcademicpeer-review

Photosystem I Protein Complex
Chlamydomonas reinhardtii
Photosystem II Protein Complex
Excited states
Light-Harvesting Protein Complexes

Analysis of fluorescence spectra in cyanobacteria from picoseconds to minutes

Acuña Sánchez, A. M., 2017, 241 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Different carotenoid conformations have distinct functions in light-harvesting regulation in plants

Liguori, N., Xu, P., van Stokkum, I., van Oort, B., Lu, Y., Karcher, D., Bock, R. & Croce, R., 8 Dec 2017, In : Nature Communications. 8, 1, 1994.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
carotenoids
Carotenoids
Conformations
Light
Excitation energy

Modelling energy transfer and trapping in the thylakoid membrane

Snellenburg, J., 2017, 226 p.

Research output: PhD ThesisPhD Thesis - Research VU, graduation VUAcademic

Open Access
File

Reaction dynamics of the chimeric channelrhodopsin C1C2

Hontani, Y., Marazzi, M., Stehfest, K., Mathes, T., van Stokkum, I. H. M., Elstner, M., Hegemann, P. & Kennis, J. T. M., 3 Aug 2017, In : Scientific Reports. 7, 7217.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
2016

A method to decompose spectral changes in Synechocystis PCC 6803 during light-induced state transitions

Acuña, A. M., Kana, R., Gwizdala, M. S., Snellenburg, J. J., van Alphen, P., van Oort, B. F., Kirilovsky, D., van Grondelle, R. & van Stokkum, I. H. M., 2016, In : Photosynthesis Research. 130, 1-3, p. 237-249

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
Synechocystis
phycobilisome
Fluorometry
Plastoquinone

Estimation of damped oscillation associated spectra from ultrafast transient absorption spectra

van Stokkum, I., Jumper, C. C., Snellenburg, J., Scholes, G. D., van Grondelle, R. & Malý, P., 2016, In : Journal of Chemical Physics. 145, 17, 174201.

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Excited states
Absorption spectra
absorption spectra
oscillations
Chromophores

Resolving Energy and Electron Transfer Processes in Dyads With the Help of Global and Target Analysis

van Stokkum, I. H. M., Ravensbergen, J., Snellenburg, J. J., van Grondelle, R., Pillai, S., Moore, T. A., Gust, D., Moore, A. L. & Kennis, J. T. M., 2016, Artificial Photosynthesis. Bruno, R. (ed.). Amsterdam: Advances in Botanical Researc, Vol. 79. p. 169-192 (79).

Research output: Chapter in Book / Report / Conference proceedingChapterAcademicpeer-review

Carotenoids
Fullerenes
Excited states
Energy transfer
Electrons

Resolving the contribution of the uncoupled phycobilisomes to cyanobacterial pulse-amplitude modulated (PAM) fluorometry signals

Acuña, A. M., Snellenburg, J. J., Gwizdala, M. S., Kirilovsky, D., van Grondelle, R. & van Stokkum, I. H. M., 2016, In : Photosynthesis Research. 127, 1, p. 91-102

Research output: Contribution to JournalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Fluorometry
fluorometry
autotrophs