A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity

Guerkan Sengoelge, Wolfgang Winnicki, Anne Kupczok, Arndt von Haeseler, Michael Schuster, Walter Pfaller, Paul Jennings, Ansgar Weltermann, Sophia Blake, Gere Sunder-Plassmann

Research output: Contribution to JournalArticleAcademicpeer-review


BACKGROUND: Large scale transcript analysis of human glomerular microvascular endothelial cells (HGMEC) has never been accomplished. We designed this study to define the transcriptome of HGMEC and facilitate a better characterization of these endothelial cells with unique features. Serial analysis of gene expression (SAGE) was used for its unbiased approach to quantitative acquisition of transcripts.

RESULTS: We generated a HGMEC SAGE library consisting of 68,987 transcript tags. Then taking advantage of large public databases and advanced bioinformatics we compared the HGMEC SAGE library with a SAGE library of non-cultured ex vivo human glomeruli (44,334 tags) which contained endothelial cells. The 823 tags common to both which would have the potential to be expressed in vivo were subsequently checked against 822,008 tags from 16 non-glomerular endothelial SAGE libraries. This resulted in 268 transcript tags differentially overexpressed in HGMEC compared to non-glomerular endothelia. These tags were filtered using a set of criteria: never before shown in kidney or any type of endothelial cell, absent in all nephron regions except the glomerulus, more highly expressed than statistically expected in HGMEC. Neurogranin, a direct target of thyroid hormone action which had been thought to be brain specific and never shown in endothelial cells before, fulfilled these criteria. Its expression in glomerular endothelium in vitro and in vivo was then verified by real-time-PCR, sequencing and immunohistochemistry.

CONCLUSIONS: Our results represent an extensive molecular characterization of HGMEC beyond a mere database, underline the endothelial heterogeneity, and propose neurogranin as a potential link in the kidney-thyroid axis.

Original languageEnglish
Pages (from-to)725
JournalBMC Genomics
Publication statusPublished - 27 Aug 2014
Externally publishedYes


  • Cells, Cultured
  • Endothelial Cells
  • Endothelium, Vascular
  • Gene Expression Profiling
  • Gene Ontology
  • Humans
  • Kidney Glomerulus
  • Microvessels
  • Neurogranin
  • Reference Standards
  • Transcriptome
  • Journal Article
  • Research Support, Non-U.S. Gov't


Dive into the research topics of 'A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity'. Together they form a unique fingerprint.

Cite this