An Open Resource for Non-human Primate Imaging

Michael P. Milham, Lei Ai, Bonhwang Koo, Ting Xu, Céline Amiez, Fabien Balezeau, Mark G. Baxter, Erwin L.A. Blezer, Thomas Brochier, Aihua Chen, Paula L. Croxson, Christienne G. Damatac, Stanislas Dehaene, Stefan Everling, Damian A. Fair, Lazar Fleysher, Winrich Freiwald, Sean Froudist-Walsh, Timothy D. Griffiths, Carole GuedjFadila Hadj-Bouziane, Suliann Ben Hamed, Noam Harel, Bassem Hiba, Bechir Jarraya, Benjamin Jung, Sabine Kastner, P. Christiaan Klink, Sze Chai Kwok, Kevin N. Laland, David A. Leopold, Patrik Lindenfors, Rogier B. Mars, Ravi S. Menon, Adam Messinger, Martine Meunier, Kelvin Mok, John H. Morrison, Jennifer Nacef, Jamie Nagy, Michael Ortiz Rios, Christopher I. Petkov, Mark Pinsk, Colline Poirier, Emmanuel Procyk, Reza Rajimehr, Simon M. Reader, Pieter R. Roelfsema, David A. Rudko, Matthew F.S. Rushworth, Brian E. Russ, Jerome Sallet, Michael Christoph Schmid, Caspar M. Schwiedrzik, Jakob Seidlitz, Julien Sein, Amir Shmuel, Elinor L. Sullivan, Leslie Ungerleider, Alexander Thiele, Orlin S. Todorov, Doris Tsao, Zheng Wang, Charles R.E. Wilson, Essa Yacoub, Frank Q. Ye, Wilbert Zarco, Yong di Zhou, Daniel S. Margulies, Charles E. Schroeder

Research output: Contribution to JournalArticleAcademicpeer-review

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Original languageEnglish
Pages (from-to)61-74
Number of pages14
JournalNeuron
Volume100
Issue number1
Early online date27 Sept 2018
DOIs
Publication statusPublished - 10 Oct 2018

Funding

Primary support for the work by Z.W. is provided by the National Natural Science Foundation of China ( 81571300 , 31771174 ). Primary support for the work by C.M.S. and W.F. is supported by a Human Frontier Science Program Long-Term Fellowship ; the NIH ; an Irma T. Hirschl/Monique Weill-Caulier Trusts Award ; a Pew Scholar Award in the Biomedical Sciences; a McKnight Scholars Award ; a Human Frontier Science Program Research Grant; the New York Stem Cell Foundation ; the National Eye Institute ; the NIMH ; the NSF Science and Technology Center for Brains, Minds, and Machines ; and the National Science Foundation . Primary support for the work by A.C. is provided by the National Natural Science Foundation of China (No. 31371029 and No. 31571121 ) and the Innovation Program of Shanghai Municipal Education Commission (No. 14ZZ051 , No. 20130076120021 , No. 15JC1400104 , and No. 16JC1400100 ). Primary support for the work by E.Y. and N.H. is provided by the following grants: R01-NS081118, R01-NS085188, P41-EB015894, P30-NS076408, and the University of Minnesota Udall Center P50NS098573 . Primary support for the work by K.M., D.A.R., and A.S. from McGill University is provided by a grant from the Brain Canada Foundation . Primary support for the work by Newcastle University provided by Wellcome Trust , Medical Research Council , European Research Council , NC3Rs , and BBSRC . Primary support for the work by the University of Oxford is provided by the Medical Research Council UK , the Biotechnology and Biological Sciences Research Council UK , the Royal Society , and the Wellcome Trust . Primary support for the work by the NIMH is provided by the Intramural Research Program of the NIMH ( ZICMH00289 ). Primary support for the work by S.E. and R.S.M. is provided by the Canadian Institutes of Health Research and Brain Canada. Primary support for the work by C.M.S. and W.F. is supported by a Human Frontier Science Program Long-Term Fellowship (LT001118/2012). Primary support for the work by F.H.-B., M.M., and C.G. is provided by the French National Research Agency ( ANR-14-CE13-0005-1 and ANR-15-CE37-0003 ) and the NEURODIS Foundation . Primary support for the work by R.R. and D.T. is provided by NIH grant R01 EY019702 . Primary support for the work by E.L.A.B., O.S.T., P.L., K.N.L., and S.M.R. was provided by the John Templeton Foundation , the Canada Foundation for Innovation , and the Anna-Greta och Holger Crafoords Stiftelse . Primary support for the work by S.C.K. and Y.-d.Z. is provided by the following grants: Ministry of Education of PRC Humanities and Social Sciences Research Grant 16YJC190006 ; STCSM Shanghai Pujiang Program 16PJ1402800l ; STCSM Natural Science Foundation of Shanghai 16ZR1410200 ; and National Key Fundamental Research (973) Program of China Grant 2013CB329501 . Primary support for the work by P.R.R. and P.C.K. is provided by grants from the Netherlands Organisation for Scientific Research (NWO) and the European Union .

FundersFunder number
Ministry of Education16YJC190006
NEURODIS Foundation
NSF Science and Technology Center for Brains, Minds, and Machines
National Key Fundamental Research (973) Program of China2013CB329501
STCSM Natural Science Foundation of Shanghai16ZR1410200
University of Minnesota Udall CenterP50NS098573
National Science Foundation
National Institutes of HealthR01 EY019702
National Institute of Mental HealthR01MH064043, 1P50MH109429, ZICMH00289
National Institute on AgingP01AG016765
National Eye InstituteR01EY017699
John Templeton Foundation
New York Stem Cell Foundation
Human Frontier Science Program
McGill University
Fondation Brain Canada
Wellcome Trust
H2020 European Research Council
Canadian Institutes of Health Research
Canada Foundation for Innovation
Medical Research Council
Biotechnology and Biological Sciences Research Council
Royal Society
Newcastle University
European Commission
European Research Council
National Centre for the Replacement, Refinement and Reduction of Animals in Research
Agence Nationale de la RechercheANR-15-CE37-0003, ANR-14-CE13-0005-1
Institut national de la santé et de la recherche médicale
National Natural Science Foundation of China31571121, 31371029, 31771174, 81571300
Fondation pour la Recherche Médicale
Nederlandse Organisatie voor Wetenschappelijk Onderzoek
Shanghai Municipal Education Commission14ZZ051, 16JC1400100, 15JC1400104, 20130076120021
Science and Technology Commission of Shanghai Municipality
Max-Planck-Gesellschaft
Fondation de France
Holger och Thyra Lauritzens Stiftelse
China Earthquake Administration
National Centre for the Replacement Refinement and Reduction of Animals in Research

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